Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Reverse (-)

92087451 .. 92088835

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGTACCTCTGATGAGCAGAAAAGATCTCATGTCCCGAAATTCGGCGATTGGAACAACAAGGGCGGCAATGTACCATACACCGCCGTTTTTGACAAGGCCCGCAAAGGTAAATTGAAAGATGGTGTGAAGATCATGAATCCAAATGATCCGGAGGAAAATCCAGAAGCTTTCACCACCATCGACGAGAAAGAGAAAGTGAAAGAAGGGGTGGTGAAGATCAAACTCCCTATCGTTGCTGAAGAGAATCGAGACTCCTCGGAATCTGAATCCATTGCGCCACAGTTGTCATATATTAGTCGTGCTAGTTTGAGTCACCGCCGCCGCAGGAGTGACGAATCGGAGCTATCTGTCTGTAGTGAAAAGATGAGTTTCGAGTGTAATAATTCATCACTTATACTGCAGCAACGGAGACAACAACGGTTGCGGGAGAAATCTGAGAAAAAGAAAAGTACGGATTCATCTTCAAAAAGAACTGGTTCAACTGAACATCATCGCAAACACTCTAGTATTACTGATATTGACATGATTCCAATACCAAAATTTGGGGATTGGGATGAGAGCGACCCAAAAGCTGGCGAAGATTATACATACAAATTCAACAAAGTGAAAGATGAAAAGAAGAATATATCTGAAATGTTCTCAGCTGCTTTGTCTTCAGAACCAAACAATGGTGTTAATACCAATAATCATGAAAAATCTTTTTCCATATCAAAGATTTGCTGCTTTCATCTATTTCCAAGAGGAAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

251

Amino Acids

28.58

Weight (kDa)

8.87

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	7 - 38	4.5e-10	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	178 - 208	5.8e-13	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	545, 575, 671
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	7 cut(s)	66, 84, 103, 319, 322, 325, 427
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	41, 542, 596
AcuI	CTGAAG	2 cut(s)	261, 642
AfaI	GTAC	3 cut(s)	7, 75, 454
AfiI	CCNNNNNNNGG	4 cut(s)	44, 545, 575, 671
AgsI	TTSAA	4 cut(s)	118, 468, 483, 601
AluBI	AGCT	4 cut(s)	170, 346, 575, 647
AluI	AGCT	4 cut(s)	170, 346, 575, 647
Alw26I	GTCTC	2 cut(s)	246, 406
AlwI	GGATC	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	403, 647, 723
ApoI	RAATTY	3 cut(s)	41, 542, 596
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	166, 226, 308
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	415, 634, 710
BccI	CCATC	2 cut(s)	116, 188
BceAI	ACGGC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	246, 406
BfaI	CTAG	2 cut(s)	306, 507
BfmI	CTRYAG	2 cut(s)	355, 401
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	6 cut(s)	67, 322, 325, 404, 648, 724
BlsI	GCNGC	6 cut(s)	68, 323, 326, 405, 649, 725
BmgT120I	GGNCC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 545, 575, 671
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	76, 273
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	4 cut(s)	44, 545, 575, 671
BseMI	GCAATG	2 cut(s)	76, 273
BseMII	CTCAG	2 cut(s)	429, 657
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	415, 634, 710
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	44, 545, 575, 671
BsmAI	GTCTC	2 cut(s)	246, 406
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	26, 132, 148, 219
BspACI	CCGC	7 cut(s)	66, 84, 103, 319, 322, 325, 427
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	430, 656
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	2 cut(s)	135, 691
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	76, 273
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	26, 132, 148, 219
Bst4CI	ACNGT	2 cut(s)	285, 423
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	103, 577
BstDEI	CTNAG	2 cut(s)	438, 643
BstF5I	GGATG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	29, 135, 151, 222
BstMAI	GTCTC	2 cut(s)	246, 406
BstMBI	GATC	4 cut(s)	26, 132, 148, 219
BstSFI	CTRYAG	2 cut(s)	355, 401
BstV1I	GCAGC	3 cut(s)	415, 634, 710
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	103, 577
CciI	TCATGA	2 cut(s)	135, 691
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	6, 74, 453
CviAII	CATG	5 cut(s)	32, 136, 526, 692, 753
CviJI	RGCY	5 cut(s)	101, 170, 346, 575, 647
CviKI_1	RGCY	5 cut(s)	101, 170, 346, 575, 647
CviQI	GTAC	3 cut(s)	6, 74, 453
DdeI	CTNAG	2 cut(s)	438, 643
DpnI	GATC	4 cut(s)	28, 134, 150, 221
DpnII	GATC	4 cut(s)	26, 132, 148, 219
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	261, 642
FaeI	CATG	5 cut(s)	35, 139, 529, 695, 756
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	31, 135, 525, 691, 752
FauI	CCCGC	2 cut(s)	110, 420
Fnu4HI	GCNGC	6 cut(s)	67, 322, 325, 404, 648, 724
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	6 cut(s)	67, 322, 325, 404, 648, 724
FspBI	CTAG	2 cut(s)	306, 507
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	6 cut(s)	67, 322, 325, 404, 648, 724
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	35, 139, 529, 695, 756
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	9 cut(s)	139, 247, 254, 263, 269, 313, 338, 458, 529
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	3 cut(s)	166, 226, 308
Hpy188I	TCNGA	7 cut(s)	13, 262, 268, 343, 439, 634, 661
Hpy188III	TCNNGA	6 cut(s)	37, 136, 152, 164, 251, 692
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	200, 741
HpyCH4III	ACNGT	2 cut(s)	285, 423
HpyCH4V	TGCA	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	438, 643
Hsp92II	CATG	5 cut(s)	35, 139, 529, 695, 756
HspAI	GCGC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	26, 132, 148, 219
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	5 cut(s)	165, 177, 313, 462, 561
Lsp1109I	GCAGC	3 cut(s)	415, 634, 710
MaeI	CTAG	2 cut(s)	306, 507
MaeIII	GTNAC	2 cut(s)	314, 332
MalI	GATC	4 cut(s)	28, 134, 150, 221
MboI	GATC	4 cut(s)	26, 132, 148, 219
MboII	GAAGA	7 cut(s)	142, 229, 254, 456, 593, 634, 648
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	5 cut(s)	41, 113, 385, 542, 596
MlyI	GAGTC	2 cut(s)	248, 322
MnlI	CCTC	4 cut(s)	19, 148, 268, 737
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	26, 132, 148, 219
NlaIII	CATG	5 cut(s)	35, 139, 529, 695, 756
NmuCI	GTSAC	2 cut(s)	314, 332
PagI	TCATGA	2 cut(s)	135, 691
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	7 cut(s)	139, 247, 263, 269, 338, 458, 529
PflMI	CCANNNNNTGG	3 cut(s)	545, 575, 671
PkrI	GCNGC	6 cut(s)	68, 323, 326, 405, 649, 725
PleI	GAGTC	2 cut(s)	248, 321
PpsI	GAGTC	2 cut(s)	248, 321
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	7, 75, 454
RsaNI	GTAC	3 cut(s)	6, 74, 453
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	6 cut(s)	67, 322, 325, 404, 648, 724
Sau3AI	GATC	4 cut(s)	26, 132, 148, 219
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	248, 322
SetI	ASST	6 cut(s)	11, 112, 172, 348, 577, 649
SfcI	CTRYAG	2 cut(s)	355, 401
Sse9I	AATT	5 cut(s)	41, 113, 385, 542, 596
SsiI	CCGC	7 cut(s)	66, 84, 103, 319, 322, 325, 427
SspMI	CTAG	2 cut(s)	306, 507
TaaI	ACNGT	2 cut(s)	285, 423
TaqI	TCGA	3 cut(s)	183, 250, 375
TasI	AATT	5 cut(s)	41, 113, 385, 542, 596
TauI	GCSGC	3 cut(s)	69, 324, 327
TfiI	GAWTC	7 cut(s)	139, 247, 263, 269, 338, 458, 529
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TseFI	GTSAC	2 cut(s)	314, 332
TseI	GCWGC	3 cut(s)	403, 647, 723
Tsp45I	GTSAC	2 cut(s)	314, 332
TspDTI	ATGAA	6 cut(s)	152, 378, 450, 630, 708, 719
TspGWI	ACGGA	2 cut(s)	424, 470
Van91I	CCANNNNNTGG	3 cut(s)	545, 575, 671
XapI	RAATTY	3 cut(s)	41, 542, 596
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	2 cut(s)	306, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.