FvH4_3g03970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014210
Physical Location & Seq
Reverse (-)
2217498 .. 2218328
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03970.t1

Sequence Viewer

Length: 831 bp
ATGAAGCACTCTTGGGCTTCGATTTCCTCAAGTCCTCTGTTTTCAAGCATTGTTACTCTCTATGCTCTGATCCTCCTCTACTTCCCGTACCATTTCTTGAGCATTGTTTTCTCGCCGGTGCTGATCATAACCGGAATAATCTTGATCACTCTTCTTCGACTCGGTGCACGTCAGAGTTTAGAAGATGACGGTCTCAAAGAAAAGGAAAAGCCTTCGGATTTGGAAATCGAAACAGAGCACTCAAAGGAAAAGCCTTCTGATCTGGAACTCGAAACAGAGCACTCTGTTGAACCAAGTGATAGTCTTGAAGTCGCAAGTGTTGTACAAGAAGAAGATCACAGCTTTGTCACGTATCGATTCGAAACAGACGAAAGCGAGATGGGTTTTGATCAGTGCCCCTGTTTCGATGACTACTTTGTTGAGTGGAATGTGAAAGCGCCATTAGAGGTCATCTATGAAGGATATGAAGGTGAAGAAGATGAGATGGATCCGAATGAGAAGGACAATCATGAAGAACATGAAAAGGAAGTTTTAGGTCTTGGAAGGCAACCTTCGTTATCTTTATATTACCCGGAGTCGGATTCAGATACTTCATCGGACGGTGACTTTTCAGTGACTGGAGCGTGGGACTCGCCGGAGAATATGTGCTACAAGTGGGTAGAGGATGACAGGGAAGGGTTGATTGAGATTGCTTTGGATGGCAACAAGAGGACGGGCTTAGAATTCCAAGTTGAGGAAGATAATTTGATAGAGATTGATATATCTCCGACAAGAAGAAATGACTTTGGCGGCGACAAGTGGATGTTTTCCGGCGAGGTTAGATTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.6

Weight (kDa)

4.18

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 789
AclWI GGATC 3 cut(s) 64, 482, 495
AcsI RAATTY 1 cut(s) 722
AfaI GTAC 2 cut(s) 89, 324
AfiI CCNNNNNNNGG 2 cut(s) 577, 733
AgsI TTSAA 3 cut(s) 45, 290, 308
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 2 cut(s) 342, 828
AluI AGCT 2 cut(s) 342, 828
Alw21I GWGCWC 3 cut(s) 169, 240, 282
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 3 cut(s) 64, 482, 495
AlwNI CAGNNNCTG 1 cut(s) 617
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 722
AspLEI GCGC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 482, 614
AsuII TTCGAA 1 cut(s) 360
BaeGI GKGCMC 2 cut(s) 169, 398
BamHI GGATCC 1 cut(s) 487
Bbv12I GWGCWC 3 cut(s) 169, 240, 282
BccI CCATC 3 cut(s) 373, 478, 692
BclI TGATCA 3 cut(s) 123, 144, 388
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 1 cut(s) 790
BlsI GCNGC 1 cut(s) 791
Bme1390I CCNGG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 13, 118
BpuMI CCSGG 1 cut(s) 572
Bsa29I ATCGAT 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 733
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 622
BseCI ATCGAT 1 cut(s) 355
BseGI GGATG 3 cut(s) 670, 703, 807
BseLI CCNNNNNNNGG 2 cut(s) 577, 733
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 2 cut(s) 169, 398
BshVI ATCGAT 1 cut(s) 355
BsiHKAI GWGCWC 3 cut(s) 169, 240, 282
BsiSI CCGG 5 cut(s) 116, 132, 572, 635, 810
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 577, 733
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 641
Bso31I GGTCTC 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 4 cut(s) 169, 240, 282, 398
Bsp1407I TGTACA 1 cut(s) 322
Bsp143I GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
BspACI CCGC 1 cut(s) 789
BspDI ATCGAT 1 cut(s) 355
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 3 cut(s) 64, 482, 495
BspT104I TTCGAA 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 322
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
Bst4CI ACNGT 2 cut(s) 191, 602
Bst6I CTCTTC 1 cut(s) 156
BstAUI TGTACA 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 718
BstF5I GGATG 3 cut(s) 670, 703, 807
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 7 cut(s) 72, 126, 147, 262, 337, 391, 490
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
BstSCI CCNGG 1 cut(s) 570
BstSLI GKGCMC 2 cut(s) 169, 398
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 355
BsuTUI ATCGAT 1 cut(s) 355
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 670, 703, 807
BtsIMutI CAGTG 2 cut(s) 398, 618
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 355
Csp6I GTAC 2 cut(s) 88, 323
CviAII CATG 2 cut(s) 509, 518
CviJI RGCY 6 cut(s) 17, 211, 253, 342, 717, 828
CviKI_1 RGCY 6 cut(s) 17, 211, 253, 342, 717, 828
CviQI GTAC 2 cut(s) 88, 323
DdeI CTNAG 1 cut(s) 718
DpnI GATC 7 cut(s) 71, 125, 146, 261, 336, 390, 489
DpnII GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 722
FaeI CATG 2 cut(s) 512, 521
FaiI YATR 9 cut(s) 63, 128, 456, 465, 510, 519, 565, 644, 761
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 641
FatI CATG 2 cut(s) 508, 517
FbaI TGATCA 3 cut(s) 123, 144, 388
Fnu4HI GCNGC 1 cut(s) 790
FokI GGATG 3 cut(s) 677, 710, 814
Fsp4HI GCNGC 1 cut(s) 790
GlaI GCGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 440
HapII CCGG 5 cut(s) 116, 132, 572, 635, 810
HhaI GCGC 1 cut(s) 439
Hin1II CATG 2 cut(s) 512, 521
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HinfI GANTC 6 cut(s) 159, 357, 575, 581, 629, 822
HpaII CCGG 5 cut(s) 116, 132, 572, 635, 810
HphI GGTGA 2 cut(s) 482, 614
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 9 cut(s) 69, 174, 217, 259, 492, 580, 586, 598, 768
Hpy188III TCNNGA 5 cut(s) 97, 142, 263, 305, 509
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 8 cut(s) 222, 264, 452, 461, 493, 537, 561, 668
HpyCH4III ACNGT 2 cut(s) 191, 602
HpyCH4IV ACGT 2 cut(s) 169, 350
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 2 cut(s) 169, 350
Hsp92II CATG 2 cut(s) 512, 521
HspAI GCGC 1 cut(s) 437
Ksp22I TGATCA 3 cut(s) 123, 144, 388
Kzo9I GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
LmnI GCTCC 1 cut(s) 620
LpnPI CCDG 9 cut(s) 129, 145, 248, 412, 585, 603, 648, 655, 823
MaeII ACGT 2 cut(s) 169, 350
MaeIII GTNAC 4 cut(s) 52, 346, 602, 613
MalI GATC 7 cut(s) 71, 125, 146, 261, 336, 390, 489
MboI GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 4 cut(s) 169, 240, 282, 398
MluCI AATT 2 cut(s) 722, 742
MlyI GAGTC 3 cut(s) 153, 584, 623
MmeI TCCRAC 2 cut(s) 558, 791
MnlI CCTC 9 cut(s) 37, 45, 83, 86, 439, 655, 702, 727, 808
MspI CCGG 5 cut(s) 116, 132, 572, 635, 810
MspR9I CCNGG 1 cut(s) 572
NciI CCSGG 1 cut(s) 572
NdeII GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
NlaIII CATG 2 cut(s) 512, 521
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 3 cut(s) 346, 602, 613
NspV TTCGAA 1 cut(s) 360
PagI TCATGA 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PfeI GAWTC 3 cut(s) 357, 581, 822
PkrI GCNGC 1 cut(s) 791
PleI GAGTC 3 cut(s) 153, 583, 623
PpsI GAGTC 3 cut(s) 153, 583, 623
Ppu21I YACGTR 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 2 cut(s) 89, 324
RsaNI GTAC 2 cut(s) 88, 323
SatI GCNGC 1 cut(s) 790
Sau3AI GATC 7 cut(s) 69, 123, 144, 259, 334, 388, 487
SchI GAGTC 3 cut(s) 153, 584, 623
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 4 cut(s) 169, 240, 282, 398
SetI ASST 9 cut(s) 172, 344, 353, 450, 472, 538, 553, 819, 830
SfuI TTCGAA 1 cut(s) 360
SgrAI CRCCGGYG 1 cut(s) 115
SmlI CTYRAG 2 cut(s) 28, 97
SmoI CTYRAG 2 cut(s) 28, 97
Sse9I AATT 2 cut(s) 722, 742
SsiI CCGC 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 191, 602
TaiI ACGT 2 cut(s) 172, 353
TaqI TCGA 7 cut(s) 20, 157, 228, 270, 355, 360, 405
TasI AATT 2 cut(s) 722, 742
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 3 cut(s) 357, 581, 822
TscAI CASTG 2 cut(s) 398, 618
TseFI GTSAC 3 cut(s) 346, 602, 613
Tsp45I GTSAC 3 cut(s) 346, 602, 613
TspDTI ATGAA 6 cut(s) 17, 471, 480, 525, 534, 582
TspRI CASTG 2 cut(s) 398, 618
VneI GTGCAC 1 cut(s) 165
XapI RAATTY 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.