Rroxscaffold_2G00115670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014210
Physical Location & Seq
Forward (+)
42069473 .. 42070960
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115670.1

Sequence Viewer

Length: 414 bp
ATGTCGGCCTCCACCGCCGCCGCTCTGTCCCCACCGTCGGACCACCGGAGGATGACGCCATCTAACTCCACGATCCCAACCCCTGCGGGCTTCGCCGGTTTTGTTCGTCGAGAAGTCCAACCCGGCCTCCCCGAGCTTCTCGGCGACGAGGACCGTCGGCTTGGCGTAGAGCCTGGCCGCGGAGAGCACGACGACGAGTTTCGGCGAGGCGATGGTGAGAGCCGGCGTCGTGGGCGACTTGCTGGAGGGATGGAGGGAGGGAGAGAGAGATCCGACGTCGTACGGAGAGAAATCGTATCCTGTTTCGATGACGGTTTTGTTGATTGGAATGTGAAGGCTGCCTTAGAGATCATATATGAAGGTGAAGAAGATGAAGTGGATCCGAATGAGAATGACATGAAATTTCAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.18

Weight (kDa)

4.71

Isoelectric Point (pI)

71.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 23
AccII CGCG 1 cut(s) 180
AciI CCGC 6 cut(s) 15, 18, 21, 86, 178, 180
AclWI GGATC 4 cut(s) 67, 264, 374, 387
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 401
AcyI GRCGYC 3 cut(s) 56, 226, 276
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 37, 179
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 4 cut(s) 67, 264, 374, 387
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 3 cut(s) 6, 124, 175
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 40, 151
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 227, 374
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 40, 151
BamHI GGATCC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 67, 206, 244
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 4 cut(s) 18, 21, 178, 339
BlsI GCNGC 4 cut(s) 19, 22, 179, 340
Bme1390I CCNGG 2 cut(s) 123, 174
Bme18I GGWCC 2 cut(s) 40, 151
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 40, 151
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 123, 174
BpmI CTGGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 123
BsaHI GRCGYC 3 cut(s) 56, 226, 276
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 179
Bse118I RCCGGY 2 cut(s) 95, 222
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 57, 255
BseLI CCNNNNNNNGG 2 cut(s) 37, 179
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 8, 126, 177
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 46, 96, 123, 223
BsiWI CGTACG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 37, 179
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 3 cut(s) 8, 126, 177
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 72, 269, 348, 379
BspACI CCGC 6 cut(s) 15, 18, 21, 86, 178, 180
BspANI GGCC 3 cut(s) 8, 126, 177
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 4 cut(s) 67, 264, 374, 387
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 2 cut(s) 95, 222
BssAI RCCGGY 2 cut(s) 95, 222
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 4 cut(s) 72, 269, 348, 379
BssNI GRCGYC 3 cut(s) 56, 226, 276
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 36, 155, 314
BstACI GRCGYC 3 cut(s) 56, 226, 276
BstC8I GCNNGC 2 cut(s) 88, 224
BstDEI CTNAG 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 57, 255
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 4 cut(s) 75, 272, 351, 382
BstMBI GATC 4 cut(s) 72, 269, 348, 379
BstMWI GCNNNNNNNGC 3 cut(s) 14, 92, 232
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 121, 172
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 269, 379
BstYI RGATCY 2 cut(s) 269, 379
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 3 cut(s) 8, 126, 177
BtgI CCRYGG 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 57, 255
Cac8I GCNNGC 2 cut(s) 88, 224
Cfr10I RCCGGY 2 cut(s) 95, 222
Cfr13I GGNCC 2 cut(s) 40, 151
Cfr42I CCGCGG 1 cut(s) 181
CseI GACGC 2 cut(s) 64, 215
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 397
CviJI RGCY 9 cut(s) 8, 90, 126, 136, 160, 172, 177, 222, 338
CviKI_1 RGCY 9 cut(s) 8, 90, 126, 136, 160, 172, 177, 222, 338
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 343
DpnI GATC 4 cut(s) 74, 271, 350, 381
DpnII GATC 4 cut(s) 72, 269, 348, 379
EaeI YGGCCR 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 40, 151
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 400
FaiI YATR 4 cut(s) 353, 355, 357, 398
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 13
FatI CATG 1 cut(s) 396
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 18, 21, 178, 339
FokI GGATG 2 cut(s) 64, 262
Fsp4HI GCNGC 4 cut(s) 18, 21, 178, 339
GluI GCNGC 4 cut(s) 18, 21, 178, 339
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 8, 126, 177
HapII CCGG 4 cut(s) 46, 96, 123, 223
HgaI GACGC 2 cut(s) 64, 215
Hin1I GRCGYC 3 cut(s) 56, 226, 276
Hin1II CATG 1 cut(s) 400
HpaII CCGG 4 cut(s) 46, 96, 123, 223
HphI GGTGA 2 cut(s) 227, 374
Hpy188I TCNGA 3 cut(s) 40, 274, 384
Hpy188III TCNNGA 2 cut(s) 110, 411
Hpy99I CGWCG 9 cut(s) 40, 111, 149, 159, 194, 197, 231, 278, 281
HpyAV CCTTC 2 cut(s) 328, 353
HpyCH4III ACNGT 3 cut(s) 36, 155, 314
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 92, 232
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 3 cut(s) 56, 226, 276
Hsp92II CATG 1 cut(s) 400
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
KspI CCGCGG 1 cut(s) 181
Kzo9I GATC 4 cut(s) 72, 269, 348, 379
LpnPI CCDG 9 cut(s) 59, 96, 109, 136, 159, 186, 228, 236, 313
Lsp1109I GCAGC 1 cut(s) 325
MaeII ACGT 1 cut(s) 276
MalI GATC 4 cut(s) 74, 271, 350, 381
MbiI CCGCTC 1 cut(s) 23
MboI GATC 4 cut(s) 72, 269, 348, 379
MboII GAAGA 2 cut(s) 377, 380
MflI RGATCY 2 cut(s) 269, 379
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 401
MmeI TCCRAC 3 cut(s) 18, 142, 297
MnlI CCTC 8 cut(s) 19, 42, 137, 142, 200, 239, 247, 251
MroNI GCCGGC 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 4 cut(s) 46, 96, 123, 223
MspR9I CCNGG 2 cut(s) 123, 174
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 14, 92, 232
NaeI GCCGGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 123
NdeII GATC 4 cut(s) 72, 269, 348, 379
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 224
Pfl23II CGTACG 1 cut(s) 280
PkrI GCNGC 4 cut(s) 19, 22, 179, 340
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspLI CGTACG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 40, 151
PsuI RGATCY 2 cut(s) 269, 379
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SacII CCGCGG 1 cut(s) 181
SatI GCNGC 4 cut(s) 18, 21, 178, 339
Sau3AI GATC 4 cut(s) 72, 269, 348, 379
Sau96I GGNCC 2 cut(s) 40, 151
ScrFI CCNGG 2 cut(s) 123, 174
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 138, 279, 364
Sfr303I CCGCGG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 181
SinI GGWCC 2 cut(s) 40, 151
Sse9I AATT 1 cut(s) 401
SsiI CCGC 6 cut(s) 15, 18, 21, 86, 178, 180
StyD4I CCNGG 2 cut(s) 121, 172
TaaI ACNGT 3 cut(s) 36, 155, 314
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 109, 306
TasI AATT 1 cut(s) 401
TauI GCSGC 3 cut(s) 20, 23, 180
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 372, 387, 413
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 40, 151
XapI RAATTY 1 cut(s) 401
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.