Rorug04G0420900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014210
Physical Location & Seq
Reverse (-)
58081343 .. 58081702
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0420900.1

Sequence Viewer

Length: 360 bp
ATGGCTAGGTTGACAATATTCACTCTGTACGTCACTTCAGCAATGTTGGTCCTTGTCGAAGGCATAGGGTTTAATGCTGATAGCGCATGGCTACTGCCACTCCGAGTACTCGACACTTATGACATAGACAATGTGAGGGTATTTGGCACCGCTGCCGAGTTCATTAAGTGGGCAGGCGGGCCTGACATGACTACTGTTGGCAGCACTGTTGGCATACGGAACGAGGACGTGCCCAAGTTGGCGGCAAGTGCCGATGAATTGGACAAGTGGTACACAGAAGTTATCGATGGTGCCTTAAAGTCCTTCCGTGTCACTCACATCACTGTTGGCAATGAAAATGATTCCAGGTCCCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

4.56

Isoelectric Point (pI)

20.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 290
AciI CCGC 3 cut(s) 150, 177, 242
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 3 cut(s) 29, 108, 272
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 344
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 152, 201
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 49, 179, 348
AvaII GGWCC 2 cut(s) 49, 348
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 2 cut(s) 146, 290
BbvI GCAGC 2 cut(s) 139, 213
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 346
BfaI CTAG 2 cut(s) 6, 358
BisI GCNGC 3 cut(s) 153, 202, 243
BlsI GCNGC 3 cut(s) 154, 203, 244
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 2 cut(s) 49, 348
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 49, 179, 348
BmiI GGNNCC 3 cut(s) 148, 292, 350
BmrFI CCNGG 1 cut(s) 346
Bsa29I ATCGAT 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse3DI GCAATG 2 cut(s) 48, 337
BseBI CCWGG 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 285
BseMI GCAATG 2 cut(s) 48, 337
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 2 cut(s) 139, 213
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 2 cut(s) 146, 290
BshVI ATCGAT 1 cut(s) 285
BslFI GGGAC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 234
BspACI CCGC 3 cut(s) 150, 177, 242
BspANI GGCC 1 cut(s) 181
BspDI ATCGAT 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 148, 292, 350
BspT107I GGYRCC 2 cut(s) 146, 290
BsrDI GCAATG 2 cut(s) 48, 337
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 3 cut(s) 196, 208, 325
BstC8I GCNNGC 2 cut(s) 175, 179
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 83, 210, 248
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 139, 213
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 181
BsuTUI ATCGAT 1 cut(s) 285
BtrI CACGTC 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 204, 321
Cac8I GCNNGC 2 cut(s) 175, 179
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 49, 179, 348
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 3 cut(s) 28, 107, 271
CviAII CATG 2 cut(s) 87, 187
CviJI RGCY 3 cut(s) 5, 91, 181
CviKI_1 RGCY 3 cut(s) 5, 91, 181
CviQI GTAC 3 cut(s) 28, 107, 271
Eco47I GGWCC 2 cut(s) 49, 348
Eco57I CTGAAG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 90, 190
FaiI YATR 6 cut(s) 65, 88, 120, 125, 188, 215
FaqI GGGAC 1 cut(s) 334
FatI CATG 2 cut(s) 86, 186
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 153, 202, 243
Fsp4HI GCNGC 3 cut(s) 153, 202, 243
FspBI CTAG 2 cut(s) 6, 358
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 153, 202, 243
HaeIII GGCC 1 cut(s) 181
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 90, 190
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 12, 273
Hpy188I TCNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 12, 273
HpyAV CCTTC 2 cut(s) 53, 313
HpyCH4III ACNGT 3 cut(s) 196, 208, 325
HpyCH4IV ACGT 2 cut(s) 30, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 210, 248
HpySE526I ACGT 2 cut(s) 30, 228
Hsp92II CATG 2 cut(s) 90, 190
HspAI GCGC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 159, 195, 331
Lsp1109I GCAGC 2 cut(s) 139, 213
MaeI CTAG 2 cut(s) 6, 358
MaeII ACGT 2 cut(s) 30, 228
MaeIII GTNAC 2 cut(s) 31, 310
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 257
MnlI CCTC 2 cut(s) 129, 217
MseI TTAA 3 cut(s) 72, 165, 296
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 3 cut(s) 83, 210, 248
NlaIII CATG 2 cut(s) 90, 190
NlaIV GGNNCC 3 cut(s) 148, 292, 350
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 31, 310
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 154, 203, 244
PpuMI RGGWCCY 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 148, 292, 350
PspPI GGNCC 3 cut(s) 49, 179, 348
PspPPI RGGWCCY 1 cut(s) 348
RsaI GTAC 3 cut(s) 29, 108, 272
RsaNI GTAC 3 cut(s) 28, 107, 271
SaqAI TTAA 3 cut(s) 72, 165, 296
SatI GCNGC 3 cut(s) 153, 202, 243
Sau96I GGNCC 3 cut(s) 49, 179, 348
ScaI AGTACT 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 1 cut(s) 234
SetI ASST 4 cut(s) 11, 33, 231, 350
SinI GGWCC 2 cut(s) 49, 348
Sse9I AATT 1 cut(s) 257
SsiI CCGC 3 cut(s) 150, 177, 242
SspI AATATT 1 cut(s) 18
SspMI CTAG 2 cut(s) 6, 358
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 3 cut(s) 196, 208, 325
TaiI ACGT 2 cut(s) 33, 231
TaqI TCGA 3 cut(s) 57, 111, 285
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 72, 165, 296
Tru9I TTAA 3 cut(s) 72, 165, 296
TscAI CASTG 2 cut(s) 211, 328
TseFI GTSAC 2 cut(s) 31, 310
TseI GCWGC 2 cut(s) 152, 201
Tsp45I GTSAC 2 cut(s) 31, 310
TspDTI ATGAA 3 cut(s) 151, 270, 348
TspGWI ACGGA 2 cut(s) 232, 296
TspRI CASTG 2 cut(s) 211, 328
VpaK11BI GGWCC 2 cut(s) 49, 348
XspI CTAG 2 cut(s) 6, 358
ZrmI AGTACT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.