Prupe.4G037000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014210
Physical Location & Seq
Forward (+)
1750756 .. 1752628
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G037000.1

Sequence Viewer

Length: 939 bp
ATGGAAGAAGATGCGAGTCTTATGATGTGCCAATTGAATTCCATTTCCGACTTCGTATTCACTGAAACCATGATCAGCTTTTGTGCTTCTGTTACCTCAAGTCCTCTGTTTTCAAGCATTGTCACTCTCTACGCTCTGATCCTCCTCTATTTCCCGTACCATTTCATCAGAATTGTTTTCTCACCAGTGCCGATCATAACAGGAATTCTCTTACTCACAATTCTACGACTTGGCGCTGTTCAAAGATTTGAAGGCGATGAACACAGAGAAAAGGAAGACAATTCTTGCCTGCTCGAAACAGAGTGTACCAAAACCAACGAGAGCAAAGAATGCAATGAGGAAAACAAAGAAAACAGGGGAAGCACGAGCACCTCCATTCAAAGAACCGAAGTCCAAGAGCAAATCCCAACTTCACCAGAAGCTCAAGATCACAGCTTTTTCACCTACCAATCCGAGACGGACTCCGAAAGCGAAATGGGTTTTGATCCGAACCCTTGTTTTGAAGACTTTTTCGTCGAGTGGAACCTGAAGGCGCCATTAGAGGTCATTTATGAAGAGAATGAAGGTGAAGAAGATGAGATGGATCGTAATGGAAATGACCCGAATTCGAAACCAGAGCAAGAAAGCCAAGTTCAGGGTCTTGAAAGGTACCCTTCGTTGTCTATGTATTACCCGGAGTCGGACTCGGATAGCTCATCGGACGGCGGGTATTCGGTGACCGGAGTTTGGGACTCGCCGGAGACCATGTGCTTCAGGTGGGAAGAGGAAGACAGAGAAGGGTTGATAGAGATTGCTTTGGAGGAAAATTCAAAGAGAGGCATGGATTTTCAAGTTGATCACGAGGAAGAGAATTTGATAGAGATTGATATATCTCCGACGAGAAACAATGAATATTGTGGCAAGAAATGGCTGTTTTCCGGCGAGGTTAGGTTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.86

Weight (kDa)

4.15

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 2 cut(s) 532, 648
AciI CCGC 1 cut(s) 705
AclWI GGATC 3 cut(s) 133, 479, 591
AcsI RAATTY 5 cut(s) 37, 204, 604, 805, 850
AcuI CTGAAG 2 cut(s) 548, 736
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 3 cut(s) 158, 307, 650
AfiI CCNNNNNNNGG 3 cut(s) 634, 679, 726
AgsI TTSAA 9 cut(s) 37, 114, 242, 251, 380, 503, 644, 810, 830
AluBI AGCT 5 cut(s) 78, 422, 435, 693, 936
AluI AGCT 5 cut(s) 78, 422, 435, 693, 936
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 449, 734
AlwI GGATC 3 cut(s) 133, 479, 591
ApoI RAATTY 5 cut(s) 37, 204, 604, 805, 850
Asp718I GGTACC 1 cut(s) 648
AspLEI GCGC 2 cut(s) 236, 535
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 5 cut(s) 174, 405, 433, 578, 727
AsuII TTCGAA 1 cut(s) 608
BanI GGYRCC 2 cut(s) 532, 648
BauI CACGAG 2 cut(s) 364, 839
BbsI GAAGAC 3 cut(s) 282, 510, 774
Bbv12I GWGCWC 1 cut(s) 371
BccI CCATC 1 cut(s) 574
BceAI ACGGC 1 cut(s) 718
BclI TGATCA 2 cut(s) 72, 835
BcnI CCSGG 1 cut(s) 674
BcoDI GTCTC 2 cut(s) 449, 734
BfoI RGCGCY 2 cut(s) 237, 536
Bme1390I CCNGG 1 cut(s) 674
BmiI GGNNCC 3 cut(s) 524, 534, 650
BmrFI CCNGG 1 cut(s) 674
BpiI GAAGAC 3 cut(s) 282, 510, 774
BplI GAGNNNNNCTC 4 cut(s) 446, 478, 668, 700
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 2 cut(s) 82, 408
BpuMI CCSGG 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 719
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 679, 726
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 340
BseLI CCNNNNNNNGG 3 cut(s) 634, 679, 726
BseMI GCAATG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 134
BshNI GGYRCC 2 cut(s) 532, 648
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 4 cut(s) 674, 720, 737, 918
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 3 cut(s) 634, 679, 726
BsmAI GTCTC 2 cut(s) 449, 734
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
BspACI CCGC 1 cut(s) 705
BspLI GGNNCC 3 cut(s) 524, 534, 650
BspPI GGATC 3 cut(s) 133, 479, 591
BspT104I TTCGAA 1 cut(s) 608
BspT107I GGYRCC 2 cut(s) 532, 648
BspTNI GGTCTC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 185
BssMI GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
BssNI GRCGYC 1 cut(s) 533
BssSI CACGAG 2 cut(s) 364, 839
Bst2BI CACGAG 2 cut(s) 364, 839
Bst6I CTCTTC 3 cut(s) 549, 756, 840
BstACI GRCGYC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 715
BstH2I RGCGCY 2 cut(s) 237, 536
BstHHI GCGC 2 cut(s) 236, 535
BstKTI GATC 7 cut(s) 75, 141, 195, 430, 487, 586, 838
BstMAI GTCTC 2 cut(s) 449, 734
BstMBI GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 672
BstV2I GAAGAC 3 cut(s) 282, 510, 774
BtgZI GCGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 60, 192
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 2 cut(s) 236, 535
Csp6I GTAC 3 cut(s) 157, 306, 649
CviAII CATG 3 cut(s) 70, 745, 820
CviJI RGCY 7 cut(s) 78, 422, 435, 627, 693, 910, 936
CviKI_1 RGCY 7 cut(s) 78, 422, 435, 627, 693, 910, 936
CviQI GTAC 3 cut(s) 157, 306, 649
DinI GGCGCC 1 cut(s) 534
DpnI GATC 7 cut(s) 74, 140, 194, 429, 486, 585, 837
DpnII GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 549, 756, 840
EarI CTCTTC 3 cut(s) 549, 756, 840
Eco31I GGTCTC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 548, 736
Eco91I GGTNACC 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 715
EcoRI GAATTC 3 cut(s) 37, 204, 604
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 3 cut(s) 73, 748, 823
FaiI YATR 8 cut(s) 23, 71, 197, 552, 665, 746, 821, 869
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 1 cut(s) 743
FatI CATG 3 cut(s) 69, 744, 819
FauI CCCGC 1 cut(s) 698
FbaI TGATCA 2 cut(s) 72, 835
GlaI GCGC 2 cut(s) 235, 534
HaeII RGCGCY 2 cut(s) 237, 536
HapII CCGG 4 cut(s) 674, 720, 737, 918
HhaI GCGC 2 cut(s) 236, 535
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 3 cut(s) 73, 748, 823
Hin6I GCGC 2 cut(s) 234, 533
HinP1I GCGC 2 cut(s) 234, 533
HinfI GANTC 5 cut(s) 16, 461, 677, 683, 731
HpaII CCGG 4 cut(s) 674, 720, 737, 918
HphI GGTGA 5 cut(s) 174, 405, 433, 578, 727
Hpy166II GTNNAC 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 425, 641, 839
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 2 cut(s) 518, 880
HpyAV CCTTC 5 cut(s) 245, 523, 557, 663, 770
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 3 cut(s) 73, 748, 823
HspAI GCGC 2 cut(s) 234, 533
KasI GGCGCC 1 cut(s) 532
KpnI GGTACC 1 cut(s) 652
Ksp22I TGATCA 2 cut(s) 72, 835
Kzo9I GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
MaeIII GTNAC 3 cut(s) 91, 121, 715
MalI GATC 7 cut(s) 74, 140, 194, 429, 486, 585, 837
MboI GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 9 cut(s) 32, 37, 171, 204, 219, 280, 604, 805, 850
Mly113I GGCGCC 1 cut(s) 533
MlyI GAGTC 5 cut(s) 25, 455, 677, 686, 725
MmeI TCCRAC 3 cut(s) 72, 660, 899
MspI CCGG 4 cut(s) 674, 720, 737, 918
MspR9I CCNGG 1 cut(s) 674
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 330
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 674
NdeII GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
NlaIII CATG 3 cut(s) 73, 748, 823
NlaIV GGNNCC 3 cut(s) 524, 534, 650
NmuCI GTSAC 2 cut(s) 121, 715
NspV TTCGAA 1 cut(s) 608
PctI GAATGC 1 cut(s) 335
PleI GAGTC 5 cut(s) 24, 455, 677, 685, 725
PluTI GGCGCC 1 cut(s) 536
PpsI GAGTC 5 cut(s) 24, 455, 677, 685, 725
PspEI GGTNACC 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 524, 534, 650
RsaI GTAC 3 cut(s) 158, 307, 650
RsaNI GTAC 3 cut(s) 157, 306, 649
Sau3AI GATC 7 cut(s) 72, 138, 192, 427, 484, 583, 835
SchI GAGTC 5 cut(s) 25, 455, 677, 686, 725
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 608
SmlI CTYRAG 2 cut(s) 97, 423
SmoI CTYRAG 2 cut(s) 97, 423
Sse9I AATT 9 cut(s) 32, 37, 171, 204, 219, 280, 604, 805, 850
SsiI CCGC 1 cut(s) 705
SspDI GGCGCC 1 cut(s) 532
SspI AATATT 1 cut(s) 893
StyD4I CCNGG 1 cut(s) 672
TaqI TCGA 3 cut(s) 294, 516, 608
TasI AATT 9 cut(s) 32, 37, 171, 204, 219, 280, 604, 805, 850
TscAI CASTG 2 cut(s) 67, 192
TseFI GTSAC 2 cut(s) 121, 715
Tsp45I GTSAC 2 cut(s) 121, 715
TspDTI ATGAA 5 cut(s) 154, 273, 567, 576, 903
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 67, 192
XapI RAATTY 5 cut(s) 37, 204, 604, 805, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.