Rh5CG056200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014210
Physical Location & Seq
Reverse (-)
4094045 .. 4095894
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG056200.1

Sequence Viewer

Length: 852 bp
ATGGAACAAACTGCGACTCATGTATGGGATTTGAATTCTCTTTCGGATTTGGTTTTCGCTGAAACAATGAAGTACTTTTGGGCTTCGATTTCCTCCAGTCCTCTGTTTTCAAGCATTGTCACTCTCTACTCTCTGATCCTCCTTTACTTCCCGTACCATTTTTTAAGCATTGTGTTCTCCCCGGTGCTGATCATAACCGGAATAATCTTGATCAGCCTTCTCCGACTCAGTGCAAGTCAGAGTTTTGAAGACGATGATCTCAAAGAAAAGGAAAAACCTTCTGATTCCATACTCGAAACAGAGCACTCTGAAACCAATGATAGTCTTGAAGTCGTTCATGAACAAATTGCAAGTGTTGTACAAGAAGAAGATCACAGCTTTGTCACGTATCGATTCGAAACAGACGAAAGCGAGATGGGTTTCAATCAGTACCCCTGTTTCGATGATTACTTTGTTGAGTGGAATGTGAAGGCGCCATTAGAGGTCATCTATGAAGAATATGAAGGTGAAGAAGATGAGAAGGATAATCGTGAAGAACATGAAAACCAAGTTTTGGGTCTTGGAAGGCAGCCTTCGTTGTCTCTATATTACCCGGAGTCGGATTCGGATACATCATCGGACGGTGACTTTTCGGTGACCGGAGCGTGGGACTCGCCGGAAAACATGTGCTACAAGTGGGAAGAGGATGACCGAGAAGGGTTGATTGAGATTGCTTTGGATGGCAATAAGAGTTCAGGCTTAGAATTTCAAGTTGACGAAGAGAATTTGATAGAGATTGATATATCTCCGACGAGAAGCAATGACTTTGGCGGTGAGAAGTGGATGTTTTCCGGTGAGATTAGATTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.56

Weight (kDa)

4.05

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 553
AciI CCGC 1 cut(s) 810
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 3 cut(s) 34, 743, 763
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 4 cut(s) 74, 155, 360, 431
AfiI CCNNNNNNNGG 3 cut(s) 553, 598, 645
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 6 cut(s) 34, 111, 248, 329, 424, 749
AluBI AGCT 2 cut(s) 378, 849
AluI AGCT 2 cut(s) 378, 849
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 3 cut(s) 34, 743, 763
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 475
AsuC2I CCSGG 2 cut(s) 182, 593
AsuHPI GGTGA 5 cut(s) 518, 635, 646, 824, 845
AsuII TTCGAA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 580
BccI CCATC 2 cut(s) 409, 713
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 2 cut(s) 189, 210
BcnI CCSGG 2 cut(s) 182, 593
BcoDI GTCTC 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 476
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 1 cut(s) 569
BlsI GCNGC 1 cut(s) 570
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 182, 593
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 182, 593
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 182, 593
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 3 cut(s) 197, 638, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 598, 645
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 805
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 3 cut(s) 691, 724, 828
BseLI CCNNNNNNNGG 3 cut(s) 553, 598, 645
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 580
BshNI GGYRCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 6 cut(s) 182, 198, 593, 639, 656, 831
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 553, 598, 645
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 662
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 5 cut(s) 135, 189, 210, 256, 370
BspACI CCGC 1 cut(s) 810
BspCNI CTCAG 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 391
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 5 cut(s) 135, 189, 210, 256, 370
BssNI GRCGYC 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 675, 753
BstACI GRCGYC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 227, 739
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 3 cut(s) 691, 724, 828
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 5 cut(s) 138, 192, 213, 259, 373
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 5 cut(s) 135, 189, 210, 256, 370
BstNSI RCATGY 1 cut(s) 667
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 180, 591
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 391
BsuI GTATCC 1 cut(s) 601
BsuTUI ATCGAT 1 cut(s) 391
BtsCI GGATG 3 cut(s) 691, 724, 828
BtsIMutI CAGTG 1 cut(s) 235
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 4 cut(s) 73, 154, 359, 430
CviAII CATG 4 cut(s) 20, 338, 539, 664
CviJI RGCY 6 cut(s) 83, 216, 378, 571, 738, 849
CviKI_1 RGCY 6 cut(s) 83, 216, 378, 571, 738, 849
CviQI GTAC 4 cut(s) 73, 154, 359, 430
DdeI CTNAG 2 cut(s) 227, 739
DinI GGCGCC 1 cut(s) 474
DpnI GATC 5 cut(s) 137, 191, 212, 258, 372
DpnII GATC 5 cut(s) 135, 189, 210, 256, 370
Eam1104I CTCTTC 2 cut(s) 675, 753
EarI CTCTTC 2 cut(s) 675, 753
Eco91I GGTNACC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
FaeI CATG 4 cut(s) 23, 341, 542, 667
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 19, 337, 538, 663
FbaI TGATCA 2 cut(s) 189, 210
Fnu4HI GCNGC 1 cut(s) 569
FokI GGATG 3 cut(s) 698, 731, 835
Fsp4HI GCNGC 1 cut(s) 569
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 6 cut(s) 182, 198, 593, 639, 656, 831
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 4 cut(s) 23, 341, 542, 667
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 8 cut(s) 16, 225, 284, 393, 596, 602, 650, 843
HpaII CCGG 6 cut(s) 182, 198, 593, 639, 656, 831
HphI GGTGA 5 cut(s) 518, 635, 646, 824, 845
Hpy166II GTNNAC 1 cut(s) 754
Hpy188III TCNNGA 4 cut(s) 208, 326, 338, 530
Hpy8I GTNNAC 1 cut(s) 754
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 8 cut(s) 227, 288, 463, 497, 514, 558, 582, 689
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 233, 350
HpyF3I CTNAG 2 cut(s) 227, 739
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 4 cut(s) 23, 341, 542, 667
HspAI GCGC 1 cut(s) 473
KasI GGCGCC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 189, 210
Kzo9I GATC 5 cut(s) 135, 189, 210, 256, 370
LmnI GCTCC 1 cut(s) 641
LpnPI CCDG 9 cut(s) 109, 195, 211, 448, 606, 652, 669, 720, 844
Lsp1109I GCAGC 1 cut(s) 580
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 4 cut(s) 118, 382, 623, 634
MalI GATC 5 cut(s) 137, 191, 212, 258, 372
MboI GATC 5 cut(s) 135, 189, 210, 256, 370
MboII GAAGA 9 cut(s) 260, 377, 380, 506, 521, 524, 545, 692, 770
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 4 cut(s) 34, 345, 743, 763
Mly113I GGCGCC 1 cut(s) 473
MlyI GAGTC 4 cut(s) 10, 219, 605, 644
MmeI TCCRAC 3 cut(s) 247, 579, 812
MnlI CCTC 5 cut(s) 103, 111, 149, 475, 676
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 1 cut(s) 164
MspI CCGG 6 cut(s) 182, 198, 593, 639, 656, 831
MspR9I CCNGG 2 cut(s) 182, 593
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 2 cut(s) 182, 593
NdeII GATC 5 cut(s) 135, 189, 210, 256, 370
NlaIII CATG 4 cut(s) 23, 341, 542, 667
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 4 cut(s) 118, 382, 623, 634
NspI RCATGY 1 cut(s) 667
NspV TTCGAA 1 cut(s) 396
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 284, 393, 602, 843
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 1 cut(s) 570
PleI GAGTC 4 cut(s) 10, 219, 604, 644
PluTI GGCGCC 1 cut(s) 476
PpsI GAGTC 4 cut(s) 10, 219, 604, 644
Ppu21I YACGTR 1 cut(s) 387
PscI ACATGT 1 cut(s) 663
PspEI GGTNACC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 474
RsaI GTAC 4 cut(s) 74, 155, 360, 431
RsaNI GTAC 4 cut(s) 73, 154, 359, 430
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 569
Sau3AI GATC 5 cut(s) 135, 189, 210, 256, 370
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 4 cut(s) 10, 219, 605, 644
ScrFI CCNGG 2 cut(s) 182, 593
SduI GDGCHC 1 cut(s) 306
SetI ASST 6 cut(s) 280, 380, 389, 486, 508, 851
SfoI GGCGCC 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 396
Sse9I AATT 4 cut(s) 34, 345, 743, 763
SsiI CCGC 1 cut(s) 810
SspDI GGCGCC 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 180, 591
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 389
TaqI TCGA 5 cut(s) 86, 294, 391, 396, 441
TaqII GACCGA 1 cut(s) 705
TasI AATT 4 cut(s) 34, 345, 743, 763
TatI WGTACW 2 cut(s) 72, 358
TfiI GAWTC 4 cut(s) 284, 393, 602, 843
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 4 cut(s) 118, 382, 623, 634
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 4 cut(s) 118, 382, 623, 634
TspDTI ATGAA 6 cut(s) 83, 326, 354, 507, 516, 555
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 553
XapI RAATTY 3 cut(s) 34, 743, 763
XceI RCATGY 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.