pycom05g29970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014210
Physical Location & Seq
Forward (+)
30257174 .. 30258263
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29970.2

Sequence Viewer

Length: 1026 bp
ATGAACAACCATAAAAAAAAAACCTCTAAAACTCTAAAACCCCACAACCCAATCCTCTTCCAAAGCCGACACTCTCAATCCATCTCTCCTCCTCCTCCCTCAGTCTTTTTTATCTTCTTCCACCTCCAATGGAATTTGTTTTTGCTTTCTCTTGATAAAGAAAGACCACATATTTTCATGGAAGAAAATGCGAGTCTCATCATCTGGGAATCCAATTCCATAACTTCCATTCCAAACTTACTACTTTCCGAAACCATGACCAACTTTTGTGCTTCAATTTCCTCAAGCCCTCTGTTTTCCAGCATTGTCGCTCTCTGCGCTCTGATCCTCCTCTACTTCCCCAACCATTTCCTCCAGATCATTTTCTCGCCGGTCCTGATCATCACTGGATTTCTCCTCCTCTCGATTCTCCGCCTCGGCGCAGTTCAGAGAATCGAAACGGAAGGCGATGAGCTAAAAGAAAAGGAAACCAATCGCTCTCTGCTCGAAAGCGAAGAAAACAGGGGAAACTGCAATGGAGTCCAAGAACAAATCCCAAGTTTGCAAGAGGACCAAGATCAAAGATTTTTGGACTACCAATCTGAAACAGACTCCGAAAGTGAAGCGGGTTTCGACCCGAAGCCGTGCTTCGAAGACTTGTTCGTCGAGTGGAACGTGAAGGCGCCACTGGAGGTCATTTATGAAGAGTACGAAGGTGAAGAAGATGAGGTGGATCCGAATGGAAACGATCCGGACTCGAATCGAAAGGATGGAAACCAAGTTCTGGGTCTTGTGAAGCACCCTTCGTTGTCGCTGTGTTACCCGGAGTCGGACTCGGATAGCTCGTCGGATGGTGGGTTTTCGGTGCCCGGAGTGTGGGACTCGCCGGATGCGATGTGTTTCCGGTGGGAGGATGATAGAGAAGGGCTGATCGAGATTGCTCTGGACGGCAATTCAAAGAGAGGCGAATTGGATTTTCGGGTTGATCACGATCACGATGAAGAGAATTTGATAGAGATTGATATATCTCCGACGAGAAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.78

Weight (kDa)

4.44

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AccB1I GGYRCC 2 cut(s) 661, 844
AccB7I CCANNNNNTGG 1 cut(s) 763
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 2 cut(s) 412, 605
AclWI GGATC 4 cut(s) 319, 707, 720, 722
AcsI RAATTY 2 cut(s) 133, 985
AcyI GRCGYC 1 cut(s) 662
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 4 cut(s) 763, 808, 855, 889
AgsI TTSAA 2 cut(s) 276, 936
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 2 cut(s) 454, 822
AluI AGCT 2 cut(s) 454, 822
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 4 cut(s) 319, 707, 720, 722
Aor13HI TCCGGA 1 cut(s) 730
ApoI RAATTY 2 cut(s) 133, 985
AspLEI GCGC 3 cut(s) 320, 422, 664
AspS9I GGNCC 2 cut(s) 373, 550
AsuC2I CCSGG 2 cut(s) 803, 849
AsuHPI GGTGA 1 cut(s) 707
AsuII TTCGAA 1 cut(s) 630
AvaII GGWCC 2 cut(s) 373, 550
BaeGI GKGCMC 1 cut(s) 849
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 661, 844
BbsI GAAGAC 1 cut(s) 639
BccI CCATC 3 cut(s) 89, 743, 824
BceAI ACGGC 2 cut(s) 607, 943
BclI TGATCA 2 cut(s) 378, 964
BcnI CCSGG 2 cut(s) 803, 849
BcoDI GTCTC 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 803, 849
Bme18I GGWCC 2 cut(s) 373, 550
BmgT120I GGNCC 2 cut(s) 373, 550
BmiI GGNNCC 3 cut(s) 663, 714, 846
BmrFI CCNGG 2 cut(s) 803, 849
BmsI GCATC 1 cut(s) 859
BpiI GAAGAC 1 cut(s) 639
BplI GAGNNNNNCTC 2 cut(s) 797, 829
BpmI CTGGAG 2 cut(s) 338, 689
Bpu14I TTCGAA 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 803, 849
BsaBI GATNNNNATC 1 cut(s) 969
BsaHI GRCGYC 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 415
BsaWI WCCGGW 2 cut(s) 730, 882
Bsc4I CCNNNNNNNGG 4 cut(s) 763, 808, 855, 889
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 391, 672
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 969
BseAI TCCGGA 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 4 cut(s) 754, 835, 874, 898
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 4 cut(s) 763, 808, 855, 889
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 391, 672
BseRI GAGGAG 6 cut(s) 78, 81, 84, 320, 386, 389
BseSI GKGCMC 1 cut(s) 849
BshNI GGYRCC 2 cut(s) 661, 844
BsiSI CCGG 6 cut(s) 371, 731, 803, 849, 866, 883
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 4 cut(s) 763, 808, 855, 889
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 872
Bsp119I TTCGAA 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 849
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
BspACI CCGC 2 cut(s) 412, 605
BspCNI CTCAG 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 663, 714, 846
BspPI GGATC 4 cut(s) 319, 707, 720, 722
BspT104I TTCGAA 1 cut(s) 630
BspT107I GGYRCC 2 cut(s) 661, 844
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 2 cut(s) 391, 672
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
BssNI GRCGYC 1 cut(s) 662
Bst6I CTCTTC 3 cut(s) 62, 678, 975
BstACI GRCGYC 1 cut(s) 662
BstBI TTCGAA 1 cut(s) 630
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 4 cut(s) 754, 835, 874, 898
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 3 cut(s) 320, 422, 664
BstKTI GATC 9 cut(s) 327, 360, 381, 559, 715, 730, 912, 967, 973
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 801, 847
BstSLI GKGCMC 1 cut(s) 849
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BtgZI GCGATG 2 cut(s) 462, 887
BtsCI GGATG 4 cut(s) 754, 835, 874, 898
BtsIMutI CAGTG 2 cut(s) 384, 665
CfoI GCGC 3 cut(s) 320, 422, 664
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 373, 550
Csp6I GTAC 1 cut(s) 688
CviAII CATG 2 cut(s) 178, 256
CviJI RGCY 6 cut(s) 66, 288, 454, 622, 822, 907
CviKI_1 RGCY 6 cut(s) 66, 288, 454, 622, 822, 907
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 1 cut(s) 100
DinI GGCGCC 1 cut(s) 663
DpnI GATC 9 cut(s) 326, 359, 380, 558, 714, 729, 911, 966, 972
DpnII GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
Eam1104I CTCTTC 3 cut(s) 62, 678, 975
EarI CTCTTC 3 cut(s) 62, 678, 975
EciI GGCGGA 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 373, 550
EgeI GGCGCC 1 cut(s) 663
EheI GGCGCC 1 cut(s) 663
FaeI CATG 2 cut(s) 181, 259
FaiI YATR 7 cut(s) 12, 171, 179, 221, 257, 681, 1004
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 1 cut(s) 872
FatI CATG 2 cut(s) 177, 255
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 2 cut(s) 378, 964
FokI GGATG 4 cut(s) 761, 842, 881, 905
GlaI GCGC 3 cut(s) 319, 421, 663
GsuI CTGGAG 2 cut(s) 338, 689
HaeII RGCGCY 1 cut(s) 665
HapII CCGG 6 cut(s) 371, 731, 803, 849, 866, 883
HhaI GCGC 3 cut(s) 320, 422, 664
Hin1I GRCGYC 1 cut(s) 662
Hin1II CATG 2 cut(s) 181, 259
Hin6I GCGC 3 cut(s) 318, 420, 662
HinP1I GCGC 3 cut(s) 318, 420, 662
HpaII CCGG 6 cut(s) 371, 731, 803, 849, 866, 883
HphI GGTGA 1 cut(s) 707
Hpy188III TCNNGA 9 cut(s) 152, 355, 376, 403, 731, 913, 923, 968, 974
Hpy99I CGWCG 3 cut(s) 647, 829, 1015
HpyAV CCTTC 5 cut(s) 437, 652, 686, 792, 896
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 2 cut(s) 513, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 654
Hsp92I GRCGYC 1 cut(s) 662
Hsp92II CATG 2 cut(s) 181, 259
HspAI GCGC 3 cut(s) 318, 420, 662
KasI GGCGCC 1 cut(s) 661
Kpn2I TCCGGA 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 378, 964
Kzo9I GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
LweI GCATC 1 cut(s) 859
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 797
MalI GATC 9 cut(s) 326, 359, 380, 558, 714, 729, 911, 966, 972
MboI GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 6 cut(s) 133, 214, 276, 931, 947, 985
Mly113I GGCGCC 1 cut(s) 662
MlyI GAGTC 7 cut(s) 202, 528, 584, 728, 806, 815, 854
MmeI TCCRAC 2 cut(s) 789, 807
MroI TCCGGA 1 cut(s) 730
MspI CCGG 6 cut(s) 371, 731, 803, 849, 866, 883
MspR9I CCNGG 2 cut(s) 803, 849
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 662
NciI CCSGG 2 cut(s) 803, 849
NdeII GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
NlaIII CATG 2 cut(s) 181, 259
NlaIV GGNNCC 3 cut(s) 663, 714, 846
NmeAIII GCCGAG 1 cut(s) 396
NspV TTCGAA 1 cut(s) 630
PcsI WCGNNNNNNNCGW 3 cut(s) 651, 821, 869
PfeI GAWTC 4 cut(s) 209, 406, 432, 739
PflMI CCANNNNNTGG 1 cut(s) 763
PleI GAGTC 7 cut(s) 201, 527, 584, 728, 806, 814, 854
PluTI GGCGCC 1 cut(s) 665
PpsI GAGTC 7 cut(s) 201, 527, 584, 728, 806, 814, 854
PspN4I GGNNCC 3 cut(s) 663, 714, 846
PspPI GGNCC 2 cut(s) 373, 550
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
Sau3AI GATC 9 cut(s) 324, 357, 378, 556, 712, 727, 909, 964, 970
Sau96I GGNCC 2 cut(s) 373, 550
SchI GAGTC 7 cut(s) 202, 528, 584, 728, 806, 815, 854
ScrFI CCNGG 2 cut(s) 803, 849
SduI GDGCHC 1 cut(s) 849
SetI ASST 8 cut(s) 26, 126, 456, 657, 675, 697, 711, 824
SfaNI GCATC 1 cut(s) 859
SfoI GGCGCC 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 630
SinI GGWCC 2 cut(s) 373, 550
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 6 cut(s) 133, 214, 276, 931, 947, 985
SsiI CCGC 2 cut(s) 412, 605
SspDI GGCGCC 1 cut(s) 661
StyD4I CCNGG 2 cut(s) 801, 847
TaiI ACGT 1 cut(s) 657
TaqI TCGA 9 cut(s) 404, 435, 486, 612, 630, 645, 737, 742, 912
TasI AATT 6 cut(s) 133, 214, 276, 931, 947, 985
TfiI GAWTC 4 cut(s) 209, 406, 432, 739
TscAI CASTG 2 cut(s) 391, 672
TspDTI ATGAA 4 cut(s) 17, 166, 696, 993
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 2 cut(s) 391, 672
Van91I CCANNNNNTGG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 373, 550
XapI RAATTY 2 cut(s) 133, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.