Rmu_co8467785.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8467785.1
OG0014210
Physical Location & Seq
Reverse (-)
465 .. 1250
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8467785.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atgaagtacttttgggcttcgatttcctcaagtcctctgttttcaagcattgtcactctctactctctgatcctcctttacttcccgtaccattttttaagcattgttttctcgccggtgctgatcataaccggaataatcttgatcagccttatccgactcggtgcaagtcagagttttgaaaacgatgatctcaaagaaaaggaaaaaccttctgattccatactcgaaacagagcactctgaaaccaatgatagtcttgaagtcgttcatgaacaaattgcaagtgttgtacaagaagaagatcacagctttgtcacgtatcgattcgaaacagacgaaagcgagatgggtttcaatcagtacccctgtttcgatgattactttgttgagtggaatgtgaaggcgccattagaggtcatctatgaagaatatgaaggtgaagaagatgagaaggataatcgtgaagaacatgaaaaccaagttttgggtcttggaaggcagccttcgttgtctctatattacccggagtcggattcggatacatcatcggacggtgacttttcggtgaccggagcgtgggactcgccggaaaacatgtgctacaagtgggaagaggatgaccgagaagggttgattgaaattgctttggatggcaataagagttcaggcttagaatttcaagttgacgaagagaatttgatagagattgatatatctccgacgagaagcaatgactttggcggtgagaggtggatgttttccggtgagattagattcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

30.06

Weight (kDa)

4.06

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 1 cut(s) 744
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 677, 697
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 4 cut(s) 8, 89, 294, 365
AfiI CCNNNNNNNGG 3 cut(s) 487, 532, 579
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 6 cut(s) 45, 182, 263, 358, 641, 683
AluBI AGCT 2 cut(s) 312, 783
AluI AGCT 2 cut(s) 312, 783
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 2 cut(s) 677, 697
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 5 cut(s) 452, 569, 580, 758, 779
AsuII TTCGAA 1 cut(s) 330
BanI GGYRCC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 343, 647
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 2 cut(s) 123, 144
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 410
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 1 cut(s) 503
BlsI GCNGC 1 cut(s) 504
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 527
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 527
Bsa29I ATCGAT 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 407
BsaWI WCCGGW 3 cut(s) 131, 572, 764
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 532, 579
Bse118I RCCGGY 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 739
BseCI ATCGAT 1 cut(s) 325
BseGI GGATG 3 cut(s) 625, 658, 762
BseLI CCNNNNNNNGG 3 cut(s) 487, 532, 579
BseMI GCAATG 1 cut(s) 739
BseXI GCAGC 1 cut(s) 514
BshNI GGYRCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 6 cut(s) 116, 132, 527, 573, 590, 765
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 487, 532, 579
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 5 cut(s) 69, 123, 144, 190, 304
BspACI CCGC 1 cut(s) 744
BspDI ATCGAT 1 cut(s) 325
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 739
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 5 cut(s) 69, 123, 144, 190, 304
BssNI GRCGYC 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 2 cut(s) 609, 687
BstACI GRCGYC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 673
BstEII GGTNACC 1 cut(s) 568
BstF5I GGATG 3 cut(s) 625, 658, 762
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 72, 126, 147, 193, 307
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 69, 123, 144, 190, 304
BstNSI RCATGY 1 cut(s) 601
BstPI GGTNACC 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 325
BsuI GTATCC 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 325
BtsCI GGATG 3 cut(s) 625, 658, 762
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 4 cut(s) 7, 88, 293, 364
CviAII CATG 3 cut(s) 272, 473, 598
CviJI RGCY 6 cut(s) 17, 150, 312, 505, 672, 783
CviKI_1 RGCY 6 cut(s) 17, 150, 312, 505, 672, 783
CviQI GTAC 4 cut(s) 7, 88, 293, 364
DdeI CTNAG 1 cut(s) 673
DinI GGCGCC 1 cut(s) 408
DpnI GATC 5 cut(s) 71, 125, 146, 192, 306
DpnII GATC 5 cut(s) 69, 123, 144, 190, 304
Eam1104I CTCTTC 2 cut(s) 609, 687
EarI CTCTTC 2 cut(s) 609, 687
Eco91I GGTNACC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 568
EgeI GGCGCC 1 cut(s) 408
EheI GGCGCC 1 cut(s) 408
FaeI CATG 3 cut(s) 275, 476, 601
FaiI YATR 9 cut(s) 128, 224, 273, 426, 435, 474, 520, 599, 716
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 596
FatI CATG 3 cut(s) 271, 472, 597
FbaI TGATCA 2 cut(s) 123, 144
Fnu4HI GCNGC 1 cut(s) 503
FokI GGATG 3 cut(s) 632, 665, 769
Fsp4HI GCNGC 1 cut(s) 503
GlaI GCGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 410
HapII CCGG 6 cut(s) 116, 132, 527, 573, 590, 765
HhaI GCGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 3 cut(s) 275, 476, 601
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 7 cut(s) 159, 218, 327, 530, 536, 584, 777
HpaII CCGG 6 cut(s) 116, 132, 527, 573, 590, 765
HphI GGTGA 5 cut(s) 452, 569, 580, 758, 779
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 9 cut(s) 69, 158, 174, 217, 244, 535, 541, 553, 723
Hpy188III TCNNGA 4 cut(s) 142, 260, 272, 464
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 7 cut(s) 222, 397, 431, 448, 492, 516, 623
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 167, 284
HpyF3I CTNAG 1 cut(s) 673
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 3 cut(s) 275, 476, 601
HspAI GCGC 1 cut(s) 407
KasI GGCGCC 1 cut(s) 406
Ksp22I TGATCA 2 cut(s) 123, 144
Kzo9I GATC 5 cut(s) 69, 123, 144, 190, 304
LmnI GCTCC 1 cut(s) 575
LpnPI CCDG 8 cut(s) 129, 145, 382, 540, 586, 603, 654, 778
Lsp1109I GCAGC 1 cut(s) 514
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 4 cut(s) 52, 316, 557, 568
MalI GATC 5 cut(s) 71, 125, 146, 192, 306
MboI GATC 5 cut(s) 69, 123, 144, 190, 304
MboII GAAGA 8 cut(s) 311, 314, 440, 455, 458, 479, 626, 704
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 4 cut(s) 279, 642, 677, 697
Mly113I GGCGCC 1 cut(s) 407
MlyI GAGTC 3 cut(s) 153, 539, 578
MmeI TCCRAC 3 cut(s) 181, 513, 746
MnlI CCTC 6 cut(s) 37, 45, 83, 409, 610, 744
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 98
MspI CCGG 6 cut(s) 116, 132, 527, 573, 590, 765
MspR9I CCNGG 1 cut(s) 527
NarI GGCGCC 1 cut(s) 407
NciI CCSGG 1 cut(s) 527
NdeII GATC 5 cut(s) 69, 123, 144, 190, 304
NlaIII CATG 3 cut(s) 275, 476, 601
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 4 cut(s) 52, 316, 557, 568
NspI RCATGY 1 cut(s) 601
NspV TTCGAA 1 cut(s) 330
PagI TCATGA 1 cut(s) 271
PciI ACATGT 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 4 cut(s) 218, 327, 536, 777
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 1 cut(s) 504
PleI GAGTC 3 cut(s) 153, 538, 578
PluTI GGCGCC 1 cut(s) 410
PpsI GAGTC 3 cut(s) 153, 538, 578
Ppu21I YACGTR 1 cut(s) 321
PscI ACATGT 1 cut(s) 597
PspEI GGTNACC 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 408
RsaI GTAC 4 cut(s) 8, 89, 294, 365
RsaNI GTAC 4 cut(s) 7, 88, 293, 364
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 503
Sau3AI GATC 5 cut(s) 69, 123, 144, 190, 304
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 3 cut(s) 153, 539, 578
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 214, 314, 323, 420, 442, 755, 785
SfoI GGCGCC 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 330
SgrAI CRCCGGYG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 4 cut(s) 279, 642, 677, 697
SsiI CCGC 1 cut(s) 744
SspDI GGCGCC 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 1 cut(s) 323
TaqI TCGA 5 cut(s) 20, 228, 325, 330, 375
TaqII GACCGA 1 cut(s) 639
TasI AATT 4 cut(s) 279, 642, 677, 697
TatI WGTACW 2 cut(s) 6, 292
TfiI GAWTC 4 cut(s) 218, 327, 536, 777
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 4 cut(s) 52, 316, 557, 568
TseI GCWGC 1 cut(s) 502
Tsp45I GTSAC 4 cut(s) 52, 316, 557, 568
TspDTI ATGAA 6 cut(s) 17, 260, 288, 441, 450, 489
Van91I CCANNNNNTGG 1 cut(s) 487
XapI RAATTY 2 cut(s) 677, 697
XceI RCATGY 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.