Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005133

Physical Location & Seq

Genomic Coordinates Forward (+)

2303454 .. 2311128

Gene Structure 7675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGTCGTCGTCGGCTGCGTCTTCTTCTTCTTCTTCCTCCAAGTGCTGCTACAATTCCGAGTGCGGCGAATTGAAGCCGGAGCACCCGAGGAAGGCCTGGCGCCTCCGCACCGGTGACTGCGCCGAGCTCTGCGACAGATGCGCTGTCATTTATGAAGAAGGAAGATTCTGTGAGACTTTCCATGTGAAAGCTTCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGCGTTCATTGTGGATGTATTGTTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGTGTAACATGTGCAAGGAAATATATTGTTCTGACATCGAATCCAGCATGGGCACCAACTTTGTTATTTCATTCACCTTTTTCTGAAAGACCGAAGGACATGTCTGGAAAAAATTGGACTCAGTTGGCTGGATCTGGCCCTGTACCATGGAGGCAGGCACCTAGTTTTTTCAATTCTTCAATTTCTTCACCTGATTTGCATACGAGAGTGCCATATGATATTGACGGTTCAATGGGAATCAATAAACTCAATGCTGGTGAAAGAATTTCAGTCCATCCCTTGGAAAAGAAGAAAGCTGAGGACTTTTCTGAAAGGCTAATGAAAGTGAATCTTGCAATTGGCACACCAGTTACTTTTGAAAATGGAAATTCAGGAAATAAGCGCATGGAGCAAAGTAGGTCATGTTTAAATGTATCTCAACAGCCTATCTCTTTGAAGGAGGAACAATCTACCCCACAGTTTGTCCTGTCTGTCCCTTATGTATCAGCAAGTGATACGAATGGTCAAAAAAATGGTCAAGTGGTGGTTACAGGAACCAATTTGCAGCCTGCCCTTCCTATGGCAAATCAATTTCATGGTATTCGTGGTGCTTCATACAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCTATGCAAAGTCTGGTCTAGATGCGCGAGGAAGACTTTCCCGGTACTGGCCTAGGTTTACTGATAAAGAGCTACAGCAAATTTCTGGAGATTCAAATTCTGTCATTACTCCACTATTTGAGAAAATGTTGAGTGCAAGTGATGCTGGGAAGATTGGACGTCTGGTATTGCCGAAAAAGTGTGCAGAGGCGTACTTCCCACCGATTTCTCACCCTGAAGGGTTACCACTTACAGTCCACGATTCACTAGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCAGGCGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAAGGCTTTAACTGCCCCATCTGATCAGGAAAATGATACGAACAAGATGGGGAATGGAGCTTCTGCCAATGCAGATGTTGGTATAACAGATACCAAATCTGGTGAAGTTTTTTCAAATGCTGAATTGGCAGTTCGTAGTACAGTTGCCAAAGGTGATAAGTCAGGTTACGTATCAAAAGATGTAGTGGGAGCTAAATCTTTGATCTCTCGGAAAAGGAAAAACAGCATCTTGGGTTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGACCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAAACATGTTCCTACTGTTGTCGTGATTGAAGGGTTTGAGTTTGAGGAATATGAGGATGGTCCGATTCTTGGGAAGCCAACTCTTTTCACTACGGGAAGTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGCAAGTGGCGCAAATTGCCTGTTAATGCTCTTCTTCCCTCAAAGTGGACTTGCTCAGATAATTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAATAGAAGAGCTTGAAGATCTGCTTCCCCGTAACACAGTTGCTCCTAAGAACGTGAAGGCTTCTAAACAGGACCCAGATAGCATTGAAGCTTTGGAGGGGCTTGATACACTTGCAGACCTTGCTATCTTAGGGGAGGGTGAGTCACTCCCATCAGCAGCTCAGGCCACAACAAAGCATCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCCAGTGGGAAGGGTCCTAAACACAAGCAAACATGCATCTGCAATGTGTGCTCAACAGTAAAGCGCCGCTTCCGCACGCTAATGATGCGGCGTGAGAAAAATAAGTCGGAGAAAGAAGCAGAAACCACACGAAAAAAGCAGCAGCAACAGCAATTTCAAGACGATGACACCCTCTTAAGTGGTAACACAGGAAGTAGCAGTCCGAACAACCGAGTGGAGGTCCTGGACCTTTCTGATGATGACTTCAACAGGACGAAATCTCCAACTCCTCCTTATAAAGGCCAAATTGACCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGTATGATAAAGTTGCTCCAAGATGCTACAGAGAGGTATCTCAGGCAGCAGAGGCAGAGTTTATCAATCTCTGTTGGCGGTGAAAGATCATTGGGCAACAAGTCACAGCTAGCTGGAATTGAAGCAGGAGGAGAACCACTTGGCAACATTGCAATTCTTGGGAATAACAATCATGATGGTGGCAATGATCATCCTGCAACTTTATCCATCAAAGCATCAGCATCCATGACAGCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

906

Amino Acids

98.99

Weight (kDa)

8.2

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	59 - 105	3.1e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	347 - 446	1.6e-15	B3 DNA binding domain
zf-CW	PF07496	593 - 635	1.7e-09	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21550 AT4G21550 AT4G21550
fragaria_vesca	FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120
malus_domestica	MD05G1324700.v1.1 MD10G1302500.v1.1
prunus_persica	Prupe.4G036100_v2.0.a1
pyrus_communis	pycom05g29890 pycom10g25500
rosa_chinensis	RchiOBHm_Chr5g0006571
rosa_laevigata	RLG00000031400
rosa_multiflora	Rmu_sc0007807.1_g000001 Rmu_sc0011154.1_g000008 Rmu_sc0011154.1_g000009
rosa_roxburghii	Rroxscaffold_1G00069470
rosa_rugosa	Rorug04G0422600.1 Rorug04G0422700
rosa_samantha	Rh5AG049800 Rh5BG049100 Rh5CG057400 Rh5DG048500
rosa_wichuraiana	Rw5G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2409
AatII	GACGTC	1 cut(s)	1084
AccB1I	GGYRCC	3 cut(s)	99, 343, 448
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	2443
AccII	CGCG	2 cut(s)	228, 949
AciI	CCGC	8 cut(s)	63, 106, 922, 2200, 2206, 2221, 2443, 2556
AclWI	GGATC	4 cut(s)	269, 282, 430, 913
AcsI	RAATTY	4 cut(s)	555, 658, 1002, 1018
AcuI	CTGAAG	2 cut(s)	1158, 1637
AcyI	GRCGYC	2 cut(s)	100, 1081
AdeI	CACNNNGTG	1 cut(s)	1790
AfaI	GTAC	4 cut(s)	435, 968, 1115, 1474
AflII	CTTAAG	1 cut(s)	2308
AflIII	ACRYGT	3 cut(s)	299, 390, 1666
AgeI	ACCGGT	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	1293
AjnI	CCWGG	4 cut(s)	95, 277, 2355, 2461
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
Alw21I	GWGCWC	3 cut(s)	84, 129, 2186
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	269, 282, 430, 913
AlwNI	CAGNNNCTG	1 cut(s)	2474
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	7 cut(s)	93, 427, 971, 1202, 2073, 2099, 2413
ApeKI	GCWGC	8 cut(s)	14, 45, 835, 1895, 2066, 2272, 2275, 2524
ApoI	RAATTY	4 cut(s)	555, 658, 1002, 1018
ArsI	GACNNNNNNTTYG	4 cut(s)	377, 409, 790, 822
AsiGI	ACCGGT	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	958
AspA2I	CCTAGG	1 cut(s)	974
AspLEI	GCGC	9 cut(s)	102, 122, 143, 228, 675, 949, 1584, 1812, 2199
AspS9I	GGNCC	9 cut(s)	428, 1203, 1721, 1870, 1981, 2100, 2147, 2353, 2359
AsuC2I	CCSGG	3 cut(s)	964, 1308, 2103
AsuNHI	GCTAGC	1 cut(s)	2587
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	6 cut(s)	1721, 1870, 1981, 2147, 2353, 2359
AvrII	CCTAGG	1 cut(s)	974
BaeGI	GKGCMC	2 cut(s)	346, 1786
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	3 cut(s)	99, 343, 448
BanII	GRGCYC	2 cut(s)	129, 1308
BbsI	GAAGAC	3 cut(s)	12, 961, 1608
Bbv12I	GWGCWC	3 cut(s)	84, 129, 2186
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	7 cut(s)	32, 847, 1907, 2078, 2284, 2287, 2536
BccI	CCATC	7 cut(s)	573, 1360, 1375, 1712, 2068, 2648, 2693
BciT130I	CCWGG	4 cut(s)	97, 279, 2357, 2463
BclI	TGATCA	2 cut(s)	1357, 2665
BcnI	CCSGG	3 cut(s)	964, 1308, 2103
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	5 cut(s)	453, 941, 975, 1169, 2588
BfmI	CTRYAG	2 cut(s)	995, 2505
BfoI	RGCGCY	3 cut(s)	103, 1585, 2200
BfrI	CTTAAG	1 cut(s)	2308
BglII	AGATCT	2 cut(s)	1927, 2452
BlnI	CCTAGG	1 cut(s)	974
Bme1390I	CCNGG	7 cut(s)	97, 279, 964, 1308, 2103, 2357, 2463
Bme18I	GGWCC	6 cut(s)	1721, 1870, 1981, 2147, 2353, 2359
BmeRI	GACNNNNNGTC	1 cut(s)	1293
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	9 cut(s)	428, 1203, 1721, 1870, 1981, 2100, 2147, 2353, 2359
BmiI	GGNNCC	9 cut(s)	101, 276, 345, 450, 826, 1871, 1872, 1983, 2148
BmrFI	CCNGG	7 cut(s)	97, 279, 964, 1308, 2103, 2357, 2463
BmrI	ACTGGG	1 cut(s)	2130
BmtI	GCTAGC	1 cut(s)	2591
BmuI	ACTGGG	1 cut(s)	2130
BpiI	GAAGAC	3 cut(s)	12, 961, 1608
BpmI	CTGGAG	2 cut(s)	300, 1029
Bpu10I	CCTNAGC	2 cut(s)	588, 2070
BpuEI	CTTGAG	3 cut(s)	240, 1623, 1884
BpuMI	CCSGG	3 cut(s)	964, 1308, 2103
BsaAI	YACGTR	1 cut(s)	1504
BsaHI	GRCGYC	2 cut(s)	100, 1081
BsaJI	CCNNGG	4 cut(s)	86, 437, 570, 974
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	8 cut(s)	193, 223, 1936, 1966, 2036, 2066, 2377, 2407
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	638, 974, 2136
Bse3DI	GCAATG	3 cut(s)	2182, 2625, 2668
BseBI	CCWGG	4 cut(s)	97, 279, 2357, 2463
BseDI	CCNNGG	4 cut(s)	86, 437, 570, 974
BseGI	GGATG	8 cut(s)	245, 565, 1723, 2086, 2111, 2124, 2668, 2699
BseMI	GCAATG	3 cut(s)	2182, 2625, 2668
BseMII	CTCAG	8 cut(s)	425, 579, 929, 1577, 1869, 2084, 2481, 2533
BseNI	ACTGG	3 cut(s)	638, 974, 2136
BseRI	GAGGAG	3 cut(s)	1647, 2391, 2622
BseSI	GKGCMC	2 cut(s)	346, 1786
BseXI	GCAGC	7 cut(s)	32, 847, 1907, 2078, 2284, 2287, 2536
BseYI	CCCAGC	1 cut(s)	1067
BsgI	GTGCAG	2 cut(s)	1125, 1351
Bsh1236I	CGCG	2 cut(s)	228, 949
BshFI	GGCC	7 cut(s)	95, 429, 973, 1204, 2075, 2101, 2415
BshNI	GGYRCC	3 cut(s)	99, 343, 448
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	3 cut(s)	84, 129, 2186
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	5 cut(s)	77, 111, 964, 1308, 2103
BslFI	GGGAC	2 cut(s)	749, 1883
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	749, 1883
BsnI	GGCC	7 cut(s)	95, 429, 973, 1204, 2075, 2101, 2415
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	6 cut(s)	84, 129, 346, 1308, 1786, 2186
Bsp143I	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
Bsp19I	CCATGG	1 cut(s)	437
BspACI	CCGC	8 cut(s)	63, 106, 922, 2200, 2206, 2221, 2443, 2556
BspANI	GGCC	7 cut(s)	95, 429, 973, 1204, 2075, 2101, 2415
BspCNI	CTCAG	8 cut(s)	424, 580, 928, 1578, 1868, 2083, 2480, 2532
BspFNI	CGCG	2 cut(s)	228, 949
BspHI	TCATGA	1 cut(s)	2650
BspLI	GGNNCC	9 cut(s)	101, 276, 345, 450, 826, 1871, 1872, 1983, 2148
BspOI	GCTAGC	1 cut(s)	2591
BspPI	GGATC	4 cut(s)	269, 282, 430, 913
BspQI	GCTCTTC	2 cut(s)	1836, 1911
BspT107I	GGYRCC	3 cut(s)	99, 343, 448
BspTI	CTTAAG	1 cut(s)	2308
BsrBI	CCGCTC	1 cut(s)	2443
BsrDI	GCAATG	3 cut(s)	2182, 2625, 2668
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	638, 974, 2136
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	86, 437, 570, 974
BssMI	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
BssNI	GRCGYC	2 cut(s)	100, 1081
BssT1I	CCWWGG	3 cut(s)	437, 570, 974
Bst2UI	CCWGG	4 cut(s)	97, 279, 2357, 2463
Bst4CI	ACNGT	7 cut(s)	518, 750, 1156, 1477, 1678, 1948, 2191
Bst6I	CTCTTC	2 cut(s)	1836, 1911
BstACI	GRCGYC	2 cut(s)	100, 1081
BstAFI	CTTAAG	1 cut(s)	2308
BstAPI	GCANNNNNTGC	4 cut(s)	1064, 2030, 2121, 2181
BstBAI	YACGTR	1 cut(s)	1504
BstC8I	GCNNGC	6 cut(s)	447, 840, 1272, 1276, 2210, 2589
BstDSI	CCRYGG	1 cut(s)	437
BstEII	GGTNACC	1 cut(s)	1143
BstENI	CCTNNNNNAGG	1 cut(s)	2409
BstF5I	GGATG	8 cut(s)	245, 565, 1723, 2086, 2111, 2124, 2668, 2699
BstFNI	CGCG	2 cut(s)	228, 949
BstH2I	RGCGCY	3 cut(s)	103, 1585, 2200
BstHHI	GCGC	9 cut(s)	102, 122, 143, 228, 675, 949, 1584, 1812, 2199
BstKTI	GATC	9 cut(s)	277, 425, 921, 1360, 1539, 1930, 2455, 2567, 2668
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
BstNI	CCWGG	4 cut(s)	97, 279, 2357, 2463
BstNSI	RCATGY	4 cut(s)	303, 394, 1670, 2169
BstPI	GGTNACC	1 cut(s)	1143
BstSCI	CCNGG	7 cut(s)	95, 277, 962, 1306, 2101, 2355, 2461
BstSFI	CTRYAG	2 cut(s)	995, 2505
BstSLI	GKGCMC	2 cut(s)	346, 1786
BstSNI	TACGTA	1 cut(s)	1504
BstUI	CGCG	2 cut(s)	228, 949
BstV1I	GCAGC	7 cut(s)	32, 847, 1907, 2078, 2284, 2287, 2536
BstV2I	GAAGAC	3 cut(s)	12, 961, 1608
BstX2I	RGATCY	5 cut(s)	274, 422, 918, 1927, 2452
BstYI	RGATCY	5 cut(s)	274, 422, 918, 1927, 2452
BsuRI	GGCC	7 cut(s)	95, 429, 973, 1204, 2075, 2101, 2415
BtgI	CCRYGG	1 cut(s)	437
BtsCI	GGATG	8 cut(s)	245, 565, 1723, 2086, 2111, 2124, 2668, 2699
BtsIMutI	CAGTG	1 cut(s)	2143
Cac8I	GCNNGC	6 cut(s)	447, 840, 1272, 1276, 2210, 2589
CaiI	CAGNNNCTG	1 cut(s)	2474
CciI	TCATGA	1 cut(s)	2650
CfoI	GCGC	9 cut(s)	102, 122, 143, 228, 675, 949, 1584, 1812, 2199
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	9 cut(s)	428, 1203, 1721, 1870, 1981, 2100, 2147, 2353, 2359
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	4 cut(s)	434, 967, 1114, 1473
CspAI	ACCGGT	1 cut(s)	110
CviQI	GTAC	4 cut(s)	434, 967, 1114, 1473
DinI	GGCGCC	1 cut(s)	101
DpnI	GATC	9 cut(s)	276, 424, 920, 1359, 1538, 1929, 2454, 2566, 2667
DpnII	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
DraI	TTTAAA	1 cut(s)	699
DraIII	CACNNNGTG	1 cut(s)	1790
DriI	GACNNNNNGTC	1 cut(s)	1293
Eam1104I	CTCTTC	2 cut(s)	1836, 1911
Eam1105I	GACNNNNNGTC	1 cut(s)	1293
EarI	CTCTTC	2 cut(s)	1836, 1911
Ecl136II	GAGCTC	1 cut(s)	127
Eco105I	TACGTA	1 cut(s)	1504
Eco130I	CCWWGG	3 cut(s)	437, 570, 974
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	129, 1308
Eco47I	GGWCC	6 cut(s)	1721, 1870, 1981, 2147, 2353, 2359
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	2 cut(s)	1158, 1637
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	1143
EcoICRI	GAGCTC	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	2409
EcoO109I	RGGNCCY	4 cut(s)	1870, 1981, 2147, 2353
EcoO65I	GGTNACC	1 cut(s)	1143
EcoRII	CCWGG	4 cut(s)	95, 277, 2355, 2461
EcoT14I	CCWWGG	3 cut(s)	437, 570, 974
EcoT22I	ATGCAT	2 cut(s)	2117, 2171
EcoT38I	GRGCYC	2 cut(s)	129, 1308
EgeI	GGCGCC	1 cut(s)	101
EheI	GGCGCC	1 cut(s)	101
ErhI	CCWWGG	3 cut(s)	437, 570, 974
FalI	AAGNNNNNCTT	8 cut(s)	606, 638, 1632, 1664, 1917, 1949, 2186, 2218
FaqI	GGGAC	2 cut(s)	749, 1883
FauI	CCCGC	1 cut(s)	2436
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	2 cut(s)	1357, 2665
FokI	GGATG	8 cut(s)	252, 552, 1730, 2073, 2111, 2118, 2655, 2686
FriOI	GRGCYC	2 cut(s)	129, 1308
FspBI	CTAG	5 cut(s)	453, 941, 975, 1169, 2588
GlaI	GCGC	9 cut(s)	101, 121, 142, 227, 674, 948, 1583, 1811, 2198
GsaI	CCCAGC	1 cut(s)	1071
GsuI	CTGGAG	2 cut(s)	300, 1029
HaeII	RGCGCY	3 cut(s)	103, 1585, 2200
HaeIII	GGCC	7 cut(s)	95, 429, 973, 1204, 2075, 2101, 2415
HapII	CCGG	5 cut(s)	77, 111, 964, 1308, 2103
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	9 cut(s)	102, 122, 143, 228, 675, 949, 1584, 1812, 2199
Hin1I	GRCGYC	2 cut(s)	100, 1081
Hin6I	GCGC	9 cut(s)	100, 120, 141, 226, 673, 947, 1582, 1810, 2197
HinP1I	GCGC	9 cut(s)	100, 120, 141, 226, 673, 947, 1582, 1810, 2197
HincII	GTYRAC	1 cut(s)	1908
HindII	GTYRAC	1 cut(s)	1908
HindIII	AAGCTT	2 cut(s)	189, 1998
HpaII	CCGG	5 cut(s)	77, 111, 964, 1308, 2103
Hpy166II	GTNNAC	4 cut(s)	981, 1159, 1848, 1908
Hpy188III	TCNNGA	9 cut(s)	396, 663, 941, 1008, 1361, 1684, 1901, 2291, 2651
Hpy8I	GTNNAC	4 cut(s)	981, 1159, 1848, 1908
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	9 cut(s)	85, 152, 379, 721, 854, 1133, 1685, 1960, 2137
HpyCH4III	ACNGT	7 cut(s)	518, 750, 1156, 1477, 1678, 1948, 2191
HpyCH4IV	ACGT	4 cut(s)	1081, 1503, 1962, 2714
HpySE526I	ACGT	4 cut(s)	1081, 1503, 1962, 2714
Hsp92I	GRCGYC	2 cut(s)	100, 1081
HspAI	GCGC	9 cut(s)	100, 120, 141, 226, 673, 947, 1582, 1810, 2197
KasI	GGCGCC	1 cut(s)	99
KflI	GGGWCCC	1 cut(s)	1870
Ksp22I	TGATCA	2 cut(s)	1357, 2665
Kzo9I	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
LguI	GCTCTTC	2 cut(s)	1836, 1911
LmnI	GCTCC	6 cut(s)	79, 679, 1391, 1523, 1957, 2499
Lsp1109I	GCAGC	7 cut(s)	32, 847, 1907, 2078, 2284, 2287, 2536
MaeI	CTAG	5 cut(s)	453, 941, 975, 1169, 2588
MaeII	ACGT	4 cut(s)	1081, 1503, 1962, 2714
MalI	GATC	9 cut(s)	276, 424, 920, 1359, 1538, 1929, 2454, 2566, 2667
MbiI	CCGCTC	1 cut(s)	2443
MboI	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
MfeI	CAATTG	2 cut(s)	627, 1265
MflI	RGATCY	5 cut(s)	274, 422, 918, 1927, 2452
MhlI	GDGCHC	6 cut(s)	84, 129, 346, 1308, 1786, 2186
Mly113I	GGCGCC	1 cut(s)	100
MlyI	GAGTC	3 cut(s)	221, 403, 2060
MmeI	TCCRAC	3 cut(s)	252, 2220, 2420
Mph1103I	ATGCAT	2 cut(s)	2117, 2171
MroXI	GAANNNNTTC	1 cut(s)	958
MseI	TTAA	4 cut(s)	698, 1343, 1824, 2309
MslI	CAYNNNNRTG	2 cut(s)	2213, 2655
MspCI	CTTAAG	1 cut(s)	2308
MspI	CCGG	5 cut(s)	77, 111, 964, 1308, 2103
MspR9I	CCNGG	7 cut(s)	97, 279, 964, 1308, 2103, 2357, 2463
MunI	CAATTG	2 cut(s)	627, 1265
MvaI	CCWGG	4 cut(s)	97, 279, 2357, 2463
MvnI	CGCG	2 cut(s)	228, 949
NarI	GGCGCC	1 cut(s)	100
NciI	CCSGG	3 cut(s)	964, 1308, 2103
NcoI	CCATGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
NheI	GCTAGC	1 cut(s)	2587
NlaIV	GGNNCC	9 cut(s)	101, 276, 345, 450, 826, 1871, 1872, 1983, 2148
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	4 cut(s)	113, 1285, 2052, 2580
NsiI	ATGCAT	2 cut(s)	2117, 2171
NspI	RCATGY	4 cut(s)	303, 394, 1670, 2169
PagI	TCATGA	1 cut(s)	2650
PceI	AGGCCT	1 cut(s)	95
PciI	ACATGT	3 cut(s)	299, 390, 1666
PciSI	GCTCTTC	2 cut(s)	1836, 1911
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	958
PfeI	GAWTC	9 cut(s)	165, 331, 528, 619, 1013, 1163, 1726, 1774, 2471
PflMI	CCANNNNNTGG	1 cut(s)	571
PfoI	TCCNGGA	2 cut(s)	277, 2355
PinAI	ACCGGT	1 cut(s)	110
PleI	GAGTC	3 cut(s)	220, 403, 2059
PluTI	GGCGCC	1 cut(s)	103
PpsI	GAGTC	3 cut(s)	220, 403, 2059
Ppu21I	YACGTR	1 cut(s)	1504
PpuMI	RGGWCCY	4 cut(s)	1870, 1981, 2147, 2353
PscI	ACATGT	3 cut(s)	299, 390, 1666
PsiI	TTATAA	1 cut(s)	2409
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	4 cut(s)	1870, 1981, 2147, 2353
Psp6I	CCWGG	4 cut(s)	95, 277, 2355, 2461
PspEI	GGTNACC	1 cut(s)	1143
PspFI	CCCAGC	1 cut(s)	1067
PspGI	CCWGG	4 cut(s)	95, 277, 2355, 2461
PspN4I	GGNNCC	9 cut(s)	101, 276, 345, 450, 826, 1871, 1872, 1983, 2148
PspPI	GGNCC	9 cut(s)	428, 1203, 1721, 1870, 1981, 2100, 2147, 2353, 2359
PspPPI	RGGWCCY	4 cut(s)	1870, 1981, 2147, 2353
PstNI	CAGNNNCTG	1 cut(s)	2474
PsuI	RGATCY	5 cut(s)	274, 422, 918, 1927, 2452
RsaI	GTAC	4 cut(s)	435, 968, 1115, 1474
RsaNI	GTAC	4 cut(s)	434, 967, 1114, 1473
RseI	CAYNNNNRTG	2 cut(s)	2213, 2655
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	1836, 1911
SaqAI	TTAA	4 cut(s)	698, 1343, 1824, 2309
Sau3AI	GATC	9 cut(s)	274, 422, 918, 1357, 1536, 1927, 2452, 2564, 2665
Sau96I	GGNCC	9 cut(s)	428, 1203, 1721, 1870, 1981, 2100, 2147, 2353, 2359
SchI	GAGTC	3 cut(s)	221, 403, 2060
ScrFI	CCNGG	7 cut(s)	97, 279, 964, 1308, 2103, 2357, 2463
SduI	GDGCHC	6 cut(s)	84, 129, 346, 1308, 1786, 2186
SfcI	CTRYAG	2 cut(s)	995, 2505
SfoI	GGCGCC	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	6 cut(s)	1721, 1870, 1981, 2147, 2353, 2359
SmiMI	CAYNNNNRTG	2 cut(s)	2213, 2655
SmlI	CTYRAG	4 cut(s)	255, 1638, 1899, 2308
SmoI	CTYRAG	4 cut(s)	255, 1638, 1899, 2308
SnaBI	TACGTA	1 cut(s)	1504
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	8 cut(s)	63, 106, 922, 2200, 2206, 2221, 2443, 2556
SspDI	GGCGCC	1 cut(s)	99
SspMI	CTAG	5 cut(s)	453, 941, 975, 1169, 2588
SstI	GAGCTC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	7 cut(s)	95, 277, 962, 1306, 2101, 2355, 2461
StyI	CCWWGG	3 cut(s)	437, 570, 974
TaaI	ACNGT	7 cut(s)	518, 750, 1156, 1477, 1678, 1948, 2191
TaiI	ACGT	4 cut(s)	1084, 1506, 1965, 2717
TaqI	TCGA	2 cut(s)	329, 1297
TaqII	GACCGA	1 cut(s)	397
TatI	WGTACW	1 cut(s)	1472
TauI	GCSGC	3 cut(s)	66, 2202, 2224
TfiI	GAWTC	9 cut(s)	165, 331, 528, 619, 1013, 1163, 1726, 1774, 2471
Tru1I	TTAA	4 cut(s)	698, 1343, 1824, 2309
Tru9I	TTAA	4 cut(s)	698, 1343, 1824, 2309
TscAI	CASTG	1 cut(s)	2143
TseFI	GTSAC	4 cut(s)	113, 1285, 2052, 2580
TseI	GCWGC	8 cut(s)	14, 45, 835, 1895, 2066, 2272, 2275, 2524
Tsp45I	GTSAC	4 cut(s)	113, 1285, 2052, 2580
TspDTI	ATGAA	7 cut(s)	168, 221, 350, 626, 854, 873, 1854
TspRI	CASTG	1 cut(s)	2143
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	2308
VpaK11BI	GGWCC	6 cut(s)	1721, 1870, 1981, 2147, 2353, 2359
XagI	CCTNNNNNAGG	1 cut(s)	2409
XapI	RAATTY	4 cut(s)	555, 658, 1002, 1018
XbaI	TCTAGA	1 cut(s)	940
XceI	RCATGY	4 cut(s)	303, 394, 1670, 2169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2135
XmaJI	CCTAGG	1 cut(s)	974
XmnI	GAANNNNTTC	1 cut(s)	958
XspI	CTAG	5 cut(s)	453, 941, 975, 1169, 2588
ZraI	GACGTC	1 cut(s)	1082
Zsp2I	ATGCAT	2 cut(s)	2117, 2171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.