Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005133

Physical Location & Seq

Genomic Coordinates Forward (+)

4072991 .. 4081309

Gene Structure 8319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGTCGCCGTCGTCGTCATCGTCTTCTTCCAAGTGCTGCTACAATTCCGAGTGCGGCGAATTGAAGCCGGAGCACCCGAGGAAGGCCTGGCGCCTCCGCACCGGAGACTTCGCCGAGCTCTGCGATCGATGCGCCCTCATTTATGAAGAAGGAAGATTTTGTGAGACTTTTCATGTGAAAGCATCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGGGTTCATTGTGGATGTATCGTTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGCGTAACATGTGCAAGGAAACATATTGTTTTGACATCAAATCCAGCATGGGCACCAACTTTGTTCTTTCATTCACCTTTATCTGATAGACTGAAGGACATGTCTGGCAAAAATTGGACTCAGTTGGCTGGATCTGGTCCTGTACCATGGAGGCAAGCACCCAGTTTATTCAATTCTTCAATTTCTTCATCTGAATTGCATGGGAGGTTGCCATATGATGTTGATGGTTCAATGGGAATTAATAAACTTAATGCCGGTGAAAGAGTATCAGTCCATCCCTTGGAAAAGAAGAAAGCCGAGGATTTTTCTGAAAGATTAATGAAAGTGAACCTTGCAATTGGCACACCAGTTAGTTTTGAAAATGGGAATTCAGGAAATAAATGCATGGAGCAAAGCAGTTCATGTTTAAATATATCTCAACAGCCTGCCTCTTTGAAGGAGGAACCATCTACTCCACAGTTTGTCCTGTCCGTACCTTATGTATCAGCAAGTGAAACAAATGGTCAAGTGGTAGTTACGGGAACCAATTTGCGGCCTGCCCTTCCTATGGTAAAGCAGTTCAATGGTACTTTACATAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCAATGCAAGGCCTCGAGCAGATGCACGGGGAAGAAGTCCGTTACTTCCACGGTACTGGCCTAGATTTACTGATCAAGAGCTACAGCAAATGTCTGGAGATTCAAATTCTGTCATTACTCCATTATTTGAGAAAATGCTGAGCGCAAGTGATGCTGGGAGGATTGGACGTCTGGTGTTGCCAAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCAGCCCGAAGGATTACCGCTTAAAGTCCAAGATTCGAAAGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCAGGTGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAGGGCTTCAACTGCCCCATCTGATCAGGAAAATGATACAAACAAGATGGGGAATGGAGTTTCAGCCCATGTAGATGTTAGTATAACAGATACCAAATCTGGTGAAGTTTTTTCAAATGCTGAATTGGCAGATCCTAGTACATTTCCCAAAGGTGATAAGTCAAGTTACATATCAAGAGAAGTAGAGGGAGCTAAATCTTTGATCTCTCGAAAAAGGAAAAATAGCAACTTGGGGTCTAAGAGTAAGCGCCTGAGGATTGAAAAGGAAGATCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAACCATGTTCCTACTGTTGTGGTGATTGAAGGTTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGACACTTTATGCTACAGGAAGTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGTAAGTGGCGCAAATTGCCTGTTAATGCCCTTCTTCCCTCAAAGTGGACTTGCTCAGATAACTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAACGGAACAGCTTGAAGATCTGCTTCCCCGTTGTAATTCAGTTGCTCCTAAGAAAATAAAGGCTGCTAAACAGGACCCAGATAACATTGAAGCTTTGGAGGGGCTTGATACACTTGCAAACCTAGCTATCTTGGGAGAAGGTGAGTCACTCCCAGCATCAGCTCAGGCCACAACAAAGCACCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCTAGTGGGAAGGGTCCTAAACACAAGCAAACATGCATCTGCAATGTATGCTCAACAGTGAAGCGCCGGTTCCGTACGTTAATGATGCGGCGCGAGAAGAATAAGTCGGAGAAAGAAGCAGAAACTACACGCAAAAAGCAGCAGCAACAGCAATTACTAGACGATGAGACCCTCTTATGTGGTAACGCAGGAAGTAGCAGTCCAAACAACAAAGTGGAGGTCCTTGAGCTTTCTGATGATGACTTTAACAGGACGAAATCTCCAACTCCACCTTATAAAGGCCAAATTGACCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGCGTGATAAAGTTGCTCCAAGATGCCACAGAAAGGTATCTCAGGCAGCAGAGGCAGAGTTTGTCAACCTCTGGTGGTGGTGAAAGATCAATGGGCAACAAGTCGCAGCGAGCTGGAGGTGAAGCAGGGGGAGAACCACTTGGCAACATTGCAATTCTTGGGAATAGCAATCATGATAGTGGCAATGATCATCCCGCAACTTTATCTGTCAAAGCTTCAGCTTCCATGACAGCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

899

Amino Acids

98.48

Weight (kDa)

8.18

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	56 - 103	5.1e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	340 - 440	2.8e-16	B3 DNA binding domain
zf-CW	PF07496	586 - 628	2.5e-09	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21550 AT4G21550 AT4G21550
fragaria_vesca	FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120
malus_domestica	MD05G1324700.v1.1 MD10G1302500.v1.1
prunus_persica	Prupe.4G036100_v2.0.a1
pyrus_communis	pycom05g29890 pycom10g25500
rosa_chinensis	RchiOBHm_Chr5g0006571
rosa_laevigata	RLG00000031400
rosa_multiflora	Rmu_sc0007807.1_g000001 Rmu_sc0011154.1_g000008 Rmu_sc0011154.1_g000009
rosa_roxburghii	Rroxscaffold_1G00069470
rosa_rugosa	Rorug04G0422600.1 Rorug04G0422700
rosa_samantha	Rh5AG049800 Rh5BG049100 Rh5CG057400 Rh5DG048500
rosa_wichuraiana	Rw5G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2391
AarI	CACCTGC	1 cut(s)	1244
AatII	GACGTC	1 cut(s)	1063
Acc36I	ACCTGC	1 cut(s)	1244
AccB1I	GGYRCC	2 cut(s)	90, 334
AccB7I	CCANNNNNTGG	2 cut(s)	562, 1709
AccBSI	CCGCTC	1 cut(s)	2425
AccII	CGCG	1 cut(s)	2208
AciI	CCGC	9 cut(s)	54, 97, 217, 814, 892, 1127, 2203, 2425, 2655
AclWI	GGATC	5 cut(s)	260, 273, 421, 883, 1439
AcsI	RAATTY	2 cut(s)	649, 997
AcuI	CTGAAG	3 cut(s)	395, 1616, 2661
AcyI	GRCGYC	2 cut(s)	91, 1060
AdeI	CACNNNGTG	1 cut(s)	1769
AfaI	GTAC	6 cut(s)	426, 756, 850, 947, 1453, 2191
AflIII	ACRYGT	2 cut(s)	290, 381
AhdI	GACNNNNNGTC	1 cut(s)	1272
AjnI	CCWGG	3 cut(s)	86, 268, 2443
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
Alw21I	GWGCWC	2 cut(s)	75, 120
Alw26I	GTCTC	3 cut(s)	99, 158, 2276
AlwI	GGATC	5 cut(s)	260, 273, 421, 883, 1439
AlwNI	CAGNNNCTG	1 cut(s)	2456
Ama87I	CYCGRG	2 cut(s)	76, 906
AoxI	GGCC	9 cut(s)	84, 815, 902, 950, 1089, 1181, 2055, 2081, 2395
ApeKI	GCWGC	7 cut(s)	36, 1874, 1952, 2254, 2257, 2506, 2566
ApoI	RAATTY	2 cut(s)	649, 997
ArsI	GACNNNNNNTTYG	2 cut(s)	2319, 2351
AseI	ATTAAT	2 cut(s)	522, 599
Asp700I	GAANNNNTTC	1 cut(s)	1318
AspLEI	GCGC	7 cut(s)	93, 134, 1037, 1563, 1791, 2181, 2208
AspS9I	GGNCC	8 cut(s)	419, 1182, 1700, 1849, 1963, 2082, 2129, 2335
AsuC2I	CCSGG	2 cut(s)	1287, 2085
AsuII	TTCGAA	1 cut(s)	1145
AvaI	CYCGRG	2 cut(s)	76, 906
AvaII	GGWCC	6 cut(s)	419, 1700, 1849, 1963, 2129, 2335
AxyI	CCTNAGG	1 cut(s)	1565
BaeGI	GKGCMC	2 cut(s)	337, 1765
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	90, 334
BanII	GRGCYC	2 cut(s)	120, 1287
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	75, 120
BbvI	GCAGC	7 cut(s)	23, 1886, 1939, 2266, 2269, 2518, 2578
BccI	CCATC	6 cut(s)	500, 564, 736, 1339, 1354, 1691
BciT130I	CCWGG	3 cut(s)	88, 270, 2445
BclI	TGATCA	3 cut(s)	964, 1336, 2647
BcnI	CCSGG	2 cut(s)	1287, 2085
BcoDI	GTCTC	3 cut(s)	99, 158, 2276
BfaI	CTAG	5 cut(s)	954, 1449, 2012, 2118, 2273
BfmI	CTRYAG	2 cut(s)	974, 1731
BfoI	RGCGCY	3 cut(s)	94, 1564, 2182
BfuAI	ACCTGC	1 cut(s)	1244
BglII	AGATCT	3 cut(s)	1582, 1906, 2434
BlpI	GCTNAGC	1 cut(s)	1031
Bme1390I	CCNGG	5 cut(s)	88, 270, 1287, 2085, 2445
Bme18I	GGWCC	6 cut(s)	419, 1700, 1849, 1963, 2129, 2335
BmeRI	GACNNNNNGTC	1 cut(s)	1272
BmeT110I	CYCGRG	2 cut(s)	76, 906
BmgT120I	GGNCC	8 cut(s)	419, 1182, 1700, 1849, 1963, 2082, 2129, 2335
BmrFI	CCNGG	5 cut(s)	88, 270, 1287, 2085, 2445
BmrI	ACTGGG	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	3 cut(s)	291, 1008, 2595
Bpu10I	CCTNAGC	1 cut(s)	2052
Bpu1102I	GCTNAGC	1 cut(s)	1031
Bpu14I	TTCGAA	1 cut(s)	1145
BpuEI	CTTGAG	4 cut(s)	231, 1602, 1863, 2360
BpuMI	CCSGG	2 cut(s)	1287, 2085
Bsa29I	ATCGAT	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	2697
BsaHI	GRCGYC	2 cut(s)	91, 1060
BsaI	GGTCTC	1 cut(s)	2276
BsaJI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 2359, 2389
Bse118I	RCCGGY	2 cut(s)	536, 2181
Bse1I	ACTGG	3 cut(s)	444, 629, 953
Bse21I	CCTNAGG	1 cut(s)	1565
Bse3DI	GCAATG	4 cut(s)	901, 2164, 2607, 2650
BseBI	CCWGG	3 cut(s)	88, 270, 2445
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BseGI	GGATG	6 cut(s)	236, 556, 1702, 2093, 2106, 2650
BseMI	GCAATG	4 cut(s)	901, 2164, 2607, 2650
BseMII	CTCAG	9 cut(s)	416, 899, 1022, 1124, 1556, 1848, 2066, 2463, 2515
BseNI	ACTGG	3 cut(s)	444, 629, 953
BseRI	GAGGAG	1 cut(s)	1626
BseSI	GKGCMC	2 cut(s)	337, 1765
BseXI	GCAGC	7 cut(s)	23, 1886, 1939, 2266, 2269, 2518, 2578
BseYI	CCCAGC	2 cut(s)	1046, 2041
BsgI	GTGCAG	2 cut(s)	1104, 1330
Bsh1236I	CGCG	1 cut(s)	2208
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	9 cut(s)	86, 817, 904, 952, 1091, 1183, 2057, 2083, 2397
BshNI	GGYRCC	2 cut(s)	90, 334
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	75, 120
BsiHKCI	CYCGRG	2 cut(s)	76, 906
BsiSI	CCGG	6 cut(s)	68, 102, 537, 1287, 2085, 2182
BsiWI	CGTACG	1 cut(s)	2189
BslFI	GGGAC	1 cut(s)	1862
BsmAI	GTCTC	3 cut(s)	99, 158, 2276
BsmFI	GGGAC	1 cut(s)	1862
BsnI	GGCC	9 cut(s)	86, 817, 904, 952, 1091, 1183, 2057, 2083, 2397
Bso31I	GGTCTC	1 cut(s)	2276
BsoBI	CYCGRG	2 cut(s)	76, 906
Bsp119I	TTCGAA	1 cut(s)	1145
Bsp1286I	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1765
Bsp1720I	GCTNAGC	1 cut(s)	1031
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	9 cut(s)	54, 97, 217, 814, 892, 1127, 2203, 2425, 2655
BspANI	GGCC	9 cut(s)	86, 817, 904, 952, 1091, 1183, 2057, 2083, 2397
BspCNI	CTCAG	9 cut(s)	415, 898, 1023, 1123, 1557, 1847, 2065, 2462, 2514
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	2208
BspHI	TCATGA	1 cut(s)	2632
BspMI	ACCTGC	1 cut(s)	1244
BspPI	GGATC	5 cut(s)	260, 273, 421, 883, 1439
BspT104I	TTCGAA	1 cut(s)	1145
BspT107I	GGYRCC	2 cut(s)	90, 334
BspTNI	GGTCTC	1 cut(s)	2276
BsrBI	CCGCTC	1 cut(s)	2425
BsrDI	GCAATG	4 cut(s)	901, 2164, 2607, 2650
BsrFI	RCCGGY	2 cut(s)	536, 2181
BsrI	ACTGG	3 cut(s)	444, 629, 953
BssAI	RCCGGY	2 cut(s)	536, 2181
BssECI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BssNI	GRCGYC	2 cut(s)	91, 1060
BssT1I	CCWWGG	2 cut(s)	428, 561
Bst2UI	CCWGG	3 cut(s)	88, 270, 2445
Bst4CI	ACNGT	4 cut(s)	741, 945, 1657, 2173
BstACI	GRCGYC	2 cut(s)	91, 1060
BstAPI	GCANNNNNTGC	3 cut(s)	1043, 2103, 2163
BstBAI	YACGTR	1 cut(s)	2697
BstBI	TTCGAA	1 cut(s)	1145
BstC8I	GCNNGC	5 cut(s)	438, 708, 819, 1251, 2571
BstDSI	CCRYGG	2 cut(s)	428, 941
BstENI	CCTNNNNNAGG	1 cut(s)	2391
BstF5I	GGATG	6 cut(s)	236, 556, 1702, 2093, 2106, 2650
BstFNI	CGCG	1 cut(s)	2208
BstH2I	RGCGCY	3 cut(s)	94, 1564, 2182
BstHHI	GCGC	7 cut(s)	93, 134, 1037, 1563, 1791, 2181, 2208
BstMAI	GTCTC	3 cut(s)	99, 158, 2276
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	3 cut(s)	88, 270, 2445
BstNSI	RCATGY	3 cut(s)	294, 385, 2151
BstSCI	CCNGG	5 cut(s)	86, 268, 1285, 2083, 2443
BstSFI	CTRYAG	2 cut(s)	974, 1731
BstSLI	GKGCMC	2 cut(s)	337, 1765
BstUI	CGCG	1 cut(s)	2208
BstV1I	GCAGC	7 cut(s)	23, 1886, 1939, 2266, 2269, 2518, 2578
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	7 cut(s)	265, 413, 888, 1444, 1582, 1906, 2434
BstXI	CCANNNNNNTGG	1 cut(s)	948
BstYI	RGATCY	7 cut(s)	265, 413, 888, 1444, 1582, 1906, 2434
Bsu15I	ATCGAT	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	1565
BsuRI	GGCC	9 cut(s)	86, 817, 904, 952, 1091, 1183, 2057, 2083, 2397
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	428, 941
BtsCI	GGATG	6 cut(s)	236, 556, 1702, 2093, 2106, 2650
BtsIMutI	CAGTG	1 cut(s)	2178
BveI	ACCTGC	1 cut(s)	1244
Cac8I	GCNNGC	5 cut(s)	438, 708, 819, 1251, 2571
CaiI	CAGNNNCTG	1 cut(s)	2456
CciI	TCATGA	1 cut(s)	2632
CfoI	GCGC	7 cut(s)	93, 134, 1037, 1563, 1791, 2181, 2208
Cfr10I	RCCGGY	2 cut(s)	536, 2181
Cfr13I	GGNCC	8 cut(s)	419, 1182, 1700, 1849, 1963, 2082, 2129, 2335
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	6 cut(s)	425, 755, 849, 946, 1452, 2190
CviQI	GTAC	6 cut(s)	425, 755, 849, 946, 1452, 2190
DinI	GGCGCC	1 cut(s)	92
DraI	TTTAAA	1 cut(s)	690
DraIII	CACNNNGTG	1 cut(s)	1769
DriI	GACNNNNNGTC	1 cut(s)	1272
Eam1105I	GACNNNNNGTC	1 cut(s)	1272
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	428, 561
Eco147I	AGGCCT	3 cut(s)	86, 904, 1091
Eco24I	GRGCYC	2 cut(s)	120, 1287
Eco31I	GGTCTC	1 cut(s)	2276
Eco47I	GGWCC	6 cut(s)	419, 1700, 1849, 1963, 2129, 2335
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	395, 1616, 2661
Eco81I	CCTNAGG	1 cut(s)	1565
Eco88I	CYCGRG	2 cut(s)	76, 906
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	2391
EcoO109I	RGGNCCY	4 cut(s)	1849, 1963, 2129, 2335
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	3 cut(s)	86, 268, 2443
EcoT14I	CCWWGG	2 cut(s)	428, 561
EcoT22I	ATGCAT	3 cut(s)	668, 2099, 2153
EcoT38I	GRGCYC	2 cut(s)	120, 1287
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	428, 561
FalI	AAGNNNNNCTT	6 cut(s)	597, 629, 1611, 1643, 1896, 1928
FaqI	GGGAC	1 cut(s)	1862
FauI	CCCGC	3 cut(s)	210, 2418, 2662
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	3 cut(s)	964, 1336, 2647
FokI	GGATG	6 cut(s)	243, 543, 1709, 2093, 2100, 2637
FriOI	GRGCYC	2 cut(s)	120, 1287
FspBI	CTAG	5 cut(s)	954, 1449, 2012, 2118, 2273
GlaI	GCGC	7 cut(s)	92, 133, 1036, 1562, 1790, 2180, 2207
GsaI	CCCAGC	2 cut(s)	1050, 2045
GsuI	CTGGAG	3 cut(s)	291, 1008, 2595
HaeII	RGCGCY	3 cut(s)	94, 1564, 2182
HaeIII	GGCC	9 cut(s)	86, 817, 904, 952, 1091, 1183, 2057, 2083, 2397
HapII	CCGG	6 cut(s)	68, 102, 537, 1287, 2085, 2182
HhaI	GCGC	7 cut(s)	93, 134, 1037, 1563, 1791, 2181, 2208
Hin1I	GRCGYC	2 cut(s)	91, 1060
Hin6I	GCGC	7 cut(s)	91, 132, 1035, 1561, 1789, 2179, 2206
HinP1I	GCGC	7 cut(s)	91, 132, 1035, 1561, 1789, 2179, 2206
HincII	GTYRAC	2 cut(s)	1887, 2526
HindII	GTYRAC	2 cut(s)	1887, 2526
HindIII	AAGCTT	2 cut(s)	1980, 2673
HinfI	GANTC	7 cut(s)	203, 400, 992, 1142, 1753, 2033, 2453
HpaII	CCGG	6 cut(s)	68, 102, 537, 1287, 2085, 2182
Hpy166II	GTNNAC	4 cut(s)	610, 1827, 1887, 2526
Hpy188III	TCNNGA	8 cut(s)	654, 968, 987, 1340, 1488, 1521, 1880, 2633
Hpy8I	GTNNAC	4 cut(s)	610, 1827, 1887, 2526
Hpy99I	CGWCG	2 cut(s)	13, 16
HpyCH4III	ACNGT	4 cut(s)	741, 945, 1657, 2173
HpyCH4IV	ACGT	3 cut(s)	1060, 2192, 2696
HpySE526I	ACGT	3 cut(s)	1060, 2192, 2696
Hsp92I	GRCGYC	2 cut(s)	91, 1060
HspAI	GCGC	7 cut(s)	91, 132, 1035, 1561, 1789, 2179, 2206
KasI	GGCGCC	1 cut(s)	90
KflI	GGGWCCC	1 cut(s)	1849
Ksp22I	TGATCA	3 cut(s)	964, 1336, 2647
LmnI	GCTCC	5 cut(s)	70, 670, 1502, 1939, 2481
Lsp1109I	GCAGC	7 cut(s)	23, 1886, 1939, 2266, 2269, 2518, 2578
MaeI	CTAG	5 cut(s)	954, 1449, 2012, 2118, 2273
MaeII	ACGT	3 cut(s)	1060, 2192, 2696
MaeIII	GTNAC	9 cut(s)	286, 796, 933, 1219, 1256, 1264, 1478, 2034, 2297
MbiI	CCGCTC	1 cut(s)	2425
MfeI	CAATTG	2 cut(s)	618, 1244
MflI	RGATCY	7 cut(s)	265, 413, 888, 1444, 1582, 1906, 2434
MhlI	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1765
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	3 cut(s)	212, 394, 2042
MmeI	TCCRAC	3 cut(s)	243, 2202, 2402
Mph1103I	ATGCAT	3 cut(s)	668, 2099, 2153
MroXI	GAANNNNTTC	1 cut(s)	1318
MseI	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1803, 2195, 2361
MslI	CAYNNNNRTG	3 cut(s)	187, 1386, 2637
MspI	CCGG	6 cut(s)	68, 102, 537, 1287, 2085, 2182
MspR9I	CCNGG	5 cut(s)	88, 270, 1287, 2085, 2445
MunI	CAATTG	2 cut(s)	618, 1244
MvaI	CCWGG	3 cut(s)	88, 270, 2445
MvnI	CGCG	1 cut(s)	2208
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	1287, 2085
NcoI	CCATGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	496
NmeAIII	GCCGAG	2 cut(s)	139, 604
NmuCI	GTSAC	3 cut(s)	1256, 1264, 2034
NsiI	ATGCAT	3 cut(s)	668, 2099, 2153
NspI	RCATGY	3 cut(s)	294, 385, 2151
NspV	TTCGAA	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	906
PagI	TCATGA	1 cut(s)	2632
PaqCI	CACCTGC	1 cut(s)	1244
PceI	AGGCCT	3 cut(s)	86, 904, 1091
PciI	ACATGT	2 cut(s)	290, 381
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 17
PdmI	GAANNNNTTC	1 cut(s)	1318
PfeI	GAWTC	4 cut(s)	992, 1142, 1753, 2453
Pfl23II	CGTACG	1 cut(s)	2189
PflMI	CCANNNNNTGG	2 cut(s)	562, 1709
PfoI	TCCNGGA	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	3 cut(s)	211, 394, 2041
PluTI	GGCGCC	1 cut(s)	94
PpsI	GAGTC	3 cut(s)	211, 394, 2041
Ppu21I	YACGTR	1 cut(s)	2697
PpuMI	RGGWCCY	4 cut(s)	1849, 1963, 2129, 2335
PscI	ACATGT	2 cut(s)	290, 381
PshBI	ATTAAT	2 cut(s)	522, 599
PsiI	TTATAA	1 cut(s)	2391
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	4 cut(s)	1849, 1963, 2129, 2335
Psp6I	CCWGG	3 cut(s)	86, 268, 2443
PspFI	CCCAGC	2 cut(s)	1046, 2041
PspGI	CCWGG	3 cut(s)	86, 268, 2443
PspLI	CGTACG	1 cut(s)	2189
PspPI	GGNCC	8 cut(s)	419, 1182, 1700, 1849, 1963, 2082, 2129, 2335
PspPPI	RGGWCCY	4 cut(s)	1849, 1963, 2129, 2335
PspXI	VCTCGAGB	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	2456
PsuI	RGATCY	7 cut(s)	265, 413, 888, 1444, 1582, 1906, 2434
PvuI	CGATCG	1 cut(s)	127
RsaI	GTAC	6 cut(s)	426, 756, 850, 947, 1453, 2191
RsaNI	GTAC	6 cut(s)	425, 755, 849, 946, 1452, 2190
RseI	CAYNNNNRTG	3 cut(s)	187, 1386, 2637
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1803, 2195, 2361
Sau96I	GGNCC	8 cut(s)	419, 1182, 1700, 1849, 1963, 2082, 2129, 2335
SchI	GAGTC	3 cut(s)	212, 394, 2042
ScrFI	CCNGG	5 cut(s)	88, 270, 1287, 2085, 2445
SduI	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1765
SfcI	CTRYAG	2 cut(s)	974, 1731
SfoI	GGCGCC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	906
SfuI	TTCGAA	1 cut(s)	1145
SinI	GGWCC	6 cut(s)	419, 1700, 1849, 1963, 2129, 2335
SlaI	CTCGAG	1 cut(s)	906
SmiMI	CAYNNNNRTG	3 cut(s)	187, 1386, 2637
SmlI	CTYRAG	5 cut(s)	246, 906, 1617, 1878, 2339
SmoI	CTYRAG	5 cut(s)	246, 906, 1617, 1878, 2339
SseBI	AGGCCT	3 cut(s)	86, 904, 1091
SsiI	CCGC	9 cut(s)	54, 97, 217, 814, 892, 1127, 2203, 2425, 2655
SspDI	GGCGCC	1 cut(s)	90
SspMI	CTAG	5 cut(s)	954, 1449, 2012, 2118, 2273
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	3 cut(s)	86, 904, 1091
StyD4I	CCNGG	5 cut(s)	86, 268, 1285, 2083, 2443
StyI	CCWWGG	2 cut(s)	428, 561
TaaI	ACNGT	4 cut(s)	741, 945, 1657, 2173
TaiI	ACGT	3 cut(s)	1063, 2195, 2699
TaqI	TCGA	5 cut(s)	127, 907, 1145, 1276, 1522
TatI	WGTACW	1 cut(s)	1451
TauI	GCSGC	3 cut(s)	57, 817, 2206
TfiI	GAWTC	4 cut(s)	992, 1142, 1753, 2453
Tru1I	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1803, 2195, 2361
Tru9I	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1803, 2195, 2361
TscAI	CASTG	1 cut(s)	2178
TseFI	GTSAC	3 cut(s)	1256, 1264, 2034
TseI	GCWGC	7 cut(s)	36, 1874, 1952, 2254, 2257, 2506, 2566
Tsp45I	GTSAC	3 cut(s)	1256, 1264, 2034
TspDTI	ATGAA	7 cut(s)	159, 161, 212, 341, 459, 617, 672
TspGWI	ACGGA	4 cut(s)	742, 921, 1907, 2177
TspRI	CASTG	1 cut(s)	2178
Van91I	CCANNNNNTGG	2 cut(s)	562, 1709
VpaK11BI	GGWCC	6 cut(s)	419, 1700, 1849, 1963, 2129, 2335
VspI	ATTAAT	2 cut(s)	522, 599
XagI	CCTNNNNNAGG	1 cut(s)	2391
XapI	RAATTY	2 cut(s)	649, 997
XceI	RCATGY	3 cut(s)	294, 385, 2151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2117
XhoI	CTCGAG	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	1318
XspI	CTAG	5 cut(s)	954, 1449, 2012, 2118, 2273
ZraI	GACGTC	1 cut(s)	1061
Zsp2I	ATGCAT	3 cut(s)	668, 2099, 2153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.