Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005133

Physical Location & Seq

Genomic Coordinates Forward (+)

3905079 .. 3913405

Gene Structure 8327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGTCTGGCAAAAATTGGACTCAGTTGGCTGGATCTGGTCCTGTACCATGGAGGCAAGCACCCAGTTTATTCAATTCTTCAATTTCTTCATCTGAGTTGCATGGGAGGTTGCCATATGATGTTGATGGTTCAATGGGAATTAATAAACTTAATGCCGGTGAAAGAGTATCAGTCCATCCCTTGGAAAAGAAGAAAGCCGAGGATTTCTCTGAAAGATTAATGAAAGTGAACCTTGCAATTGGCACACCAGTTAGTTTTGAAAATGGGAATTCAGGAAATAAATGCATGGAGCAAAGCAGTTCATGTTTAAATATATCTCAACAGCCTGCCTCTTTGAAGGAGGAACCATCTACTCCACAGTTTGTCCTGTCTGTACCTTATGTATCAGCAAGTGAAACAAATGGTCAAGTGGTAGTTACGGGAACCAATTTGCGGCCTGCCCTTCCTATGGTAAAGCAGTTCAATGGTACTTTACATAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCAATGCAAGGCCTCGAGCAGATGCACGGGGAAGAAGTCCGTTACTTCCACGGTACTGGCCTAGATTTACTGATCAAGAGCTACAGCAAATGTCTGGAGATTCAAATTCTGTCATTACTCCATTATTTGAGAAAATGCTGAGTGCAAGTGATGCTGGGAGGATTGGACGTCTGGTGTTGCCAAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCAGCCTGAAGGATTACCGCTTAAAGTCCAAGATTCGAAAGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCAGGCGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAGGGCTTCAACTGCCCCATCTGATCAGGAAAATGATACAAACAAGATGGGGAATGGAGTTTCAGCCCATGTAGATGCTGAATTGGCAGATCCTAGTACATTTCCCAAAGGTGATAAGTCAAGTTACATATCAAAAGAAGTAGAGGGAGCTAAATCTTTGATCTCTCGAAAAAGGAAAAATAGCAACTTGGGGTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGATCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAATCATGTTCCTACTGTTGTGGTGATTGAAGGTTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGACACTTTATGCTACAGGAAGTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGTAAGTGGCGCAAATTGCCTGTTAATGCCCTTCTTCCCTCAAAGTGGACTTGCTCAGATAACTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAACAGAACAGCTTGAAGATCTGCTTCCCCGTTGTAATTCAGTTGCTCCTAAGAAAATAAGGGCTGCTAAACAGGACCCAGATAACATTGAAGCTTTGGAGGGGCTTGATACACTTGCAAACCTAGCTATCTTGGGAGAAGGTGAGTCACTCCCAGCATCAGCTCAGGCCACAACAAAGCACCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCTAGTGGGAAGGGTCCTAAACACAAGCAAACATGCATCTGCAATGTATGCTCAACAGTGAAGCGCCGGTTCCGTACGTTAATGATGCGGCGCGAGAAGAATAAGTCGGAGAAAGAAGCAGAAACTACACGCAAAAAGCAGCAGCAACAGCAATTACTAGACGATGAGACCCTCTTATGTGGTAACGCAGGAAGTAGCAGTCCAAACAACAAAGTGGAGGTCCTTGAGCTTTCTGATGATGACTTTAACAGGACGAAATCTCCAACTCCACCTTATAAAGGCCAAATTGATCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGCGTGATAAAGTTGCTCCAAGATGCCACAGAAAGATATCTCAGGCAGCAGAGGCAGAGTTTGTCAACCTCTGGTGGTGGTGAAAGATCAATGGGCAACAAGTCGCAGCGAGCTGGAGGTGAAGCAGGGGGAGAACCACTTGGCAACATTGCAATTCTTGGGAATAGCAATCATGATAGTGGCAATGATCATCCTGCAACTTTATCTGTCAAAGCTTCAGCTTCCATGACAGCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

758

Amino Acids

82.92

Weight (kDa)

8.29

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	213 - 313	2.2e-16	B3 DNA binding domain
zf-CW	PF07496	445 - 487	2e-09	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21550 AT4G21550 AT4G21550
fragaria_vesca	FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120
malus_domestica	MD05G1324700.v1.1 MD10G1302500.v1.1
prunus_persica	Prupe.4G036100_v2.0.a1
pyrus_communis	pycom05g29890 pycom10g25500
rosa_chinensis	RchiOBHm_Chr5g0006571
rosa_laevigata	RLG00000031400
rosa_multiflora	Rmu_sc0007807.1_g000001 Rmu_sc0011154.1_g000008 Rmu_sc0011154.1_g000009
rosa_roxburghii	Rroxscaffold_1G00069470
rosa_rugosa	Rorug04G0422600.1 Rorug04G0422700
rosa_samantha	Rh5AG049800 Rh5BG049100 Rh5CG057400 Rh5DG048500
rosa_wichuraiana	Rw5G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1968
AatII	GACGTC	1 cut(s)	682
AccB7I	CCANNNNNTGG	2 cut(s)	181, 1286
AccBSI	CCGCTC	1 cut(s)	2002
AccII	CGCG	1 cut(s)	1785
AciI	CCGC	5 cut(s)	433, 511, 746, 1780, 2002
AclWI	GGATC	3 cut(s)	40, 502, 1016
AcsI	RAATTY	2 cut(s)	268, 616
AcuI	CTGAAG	3 cut(s)	756, 1193, 2238
AcyI	GRCGYC	1 cut(s)	679
AdeI	CACNNNGTG	1 cut(s)	1346
AfaI	GTAC	6 cut(s)	45, 375, 469, 566, 1030, 1768
AfiI	CCNNNNNNNGG	9 cut(s)	181, 432, 448, 1286, 1401, 1656, 1697, 1698, 1970
AhdI	GACNNNNNGTC	1 cut(s)	891
AjnI	CCWGG	1 cut(s)	2020
Alw26I	GTCTC	1 cut(s)	1853
AlwI	GGATC	3 cut(s)	40, 502, 1016
AlwNI	CAGNNNCTG	1 cut(s)	2033
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	8 cut(s)	434, 521, 569, 708, 800, 1632, 1658, 1972
ApeKI	GCWGC	6 cut(s)	1451, 1529, 1831, 1834, 2083, 2143
ApoI	RAATTY	2 cut(s)	268, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	1896, 1928
AseI	ATTAAT	2 cut(s)	141, 218
Asp700I	GAANNNNTTC	1 cut(s)	937
AspLEI	GCGC	4 cut(s)	1140, 1368, 1758, 1785
AspS9I	GGNCC	8 cut(s)	38, 801, 1277, 1426, 1540, 1659, 1706, 1912
AsuC2I	CCSGG	2 cut(s)	906, 1662
AsuHPI	GGTGA	9 cut(s)	170, 509, 1055, 1252, 1334, 1619, 2010, 2129, 2168
AsuII	TTCGAA	1 cut(s)	764
AvaI	CYCGRG	1 cut(s)	525
AvaII	GGWCC	6 cut(s)	38, 1277, 1426, 1540, 1706, 1912
BaeGI	GKGCMC	1 cut(s)	1342
BanII	GRGCYC	1 cut(s)	906
BbvI	GCAGC	6 cut(s)	1463, 1516, 1843, 1846, 2095, 2155
BccI	CCATC	6 cut(s)	119, 183, 355, 958, 973, 1268
BciT130I	CCWGG	1 cut(s)	2022
BclI	TGATCA	3 cut(s)	583, 955, 2224
BcnI	CCSGG	2 cut(s)	906, 1662
BcoDI	GTCTC	1 cut(s)	1853
BfaI	CTAG	5 cut(s)	573, 1026, 1589, 1695, 1850
BfmI	CTRYAG	2 cut(s)	593, 1308
BfoI	RGCGCY	2 cut(s)	1141, 1759
BglII	AGATCT	3 cut(s)	1159, 1483, 2011
BisI	GCNGC	8 cut(s)	434, 1452, 1530, 1781, 1832, 1835, 2084, 2144
BlsI	GCNGC	8 cut(s)	435, 1453, 1531, 1782, 1833, 1836, 2085, 2145
Bme1390I	CCNGG	3 cut(s)	906, 1662, 2022
Bme18I	GGWCC	6 cut(s)	38, 1277, 1426, 1540, 1706, 1912
BmeRI	GACNNNNNGTC	1 cut(s)	891
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	8 cut(s)	38, 801, 1277, 1426, 1540, 1659, 1706, 1912
BmiI	GGNNCC	7 cut(s)	345, 424, 1427, 1428, 1542, 1707, 1763
BmrFI	CCNGG	3 cut(s)	906, 1662, 2022
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	9 cut(s)	523, 652, 997, 1631, 1655, 1692, 1737, 1767, 2050
BmuI	ACTGGG	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	627, 2172
Bpu10I	CCTNAGC	1 cut(s)	1629
Bpu14I	TTCGAA	1 cut(s)	764
BpuEI	CTTGAG	3 cut(s)	1179, 1440, 1937
BpuMI	CCSGG	2 cut(s)	906, 1662
BsaAI	YACGTR	1 cut(s)	2274
BsaHI	GRCGYC	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	1853
BsaJI	CCNNGG	4 cut(s)	47, 180, 198, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	1936, 1966
Bsc4I	CCNNNNNNNGG	9 cut(s)	181, 432, 448, 1286, 1401, 1656, 1697, 1698, 1970
Bse118I	RCCGGY	2 cut(s)	155, 1758
Bse1I	ACTGG	3 cut(s)	63, 248, 572
Bse3DI	GCAATG	4 cut(s)	520, 1741, 2184, 2227
BseBI	CCWGG	1 cut(s)	2022
BseDI	CCNNGG	4 cut(s)	47, 180, 198, 560
BseGI	GGATG	5 cut(s)	175, 1279, 1670, 1683, 2227
BseLI	CCNNNNNNNGG	9 cut(s)	181, 432, 448, 1286, 1401, 1656, 1697, 1698, 1970
BseMI	GCAATG	4 cut(s)	520, 1741, 2184, 2227
BseNI	ACTGG	3 cut(s)	63, 248, 572
BseRI	GAGGAG	1 cut(s)	1203
BseSI	GKGCMC	1 cut(s)	1342
BseXI	GCAGC	6 cut(s)	1463, 1516, 1843, 1846, 2095, 2155
BseYI	CCCAGC	2 cut(s)	665, 1618
BsgI	GTGCAG	2 cut(s)	723, 949
Bsh1236I	CGCG	1 cut(s)	1785
BshFI	GGCC	8 cut(s)	436, 523, 571, 710, 802, 1634, 1660, 1974
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	4 cut(s)	156, 906, 1662, 1759
BsiWI	CGTACG	1 cut(s)	1766
BslFI	GGGAC	1 cut(s)	1439
BslI	CCNNNNNNNGG	9 cut(s)	181, 432, 448, 1286, 1401, 1656, 1697, 1698, 1970
BsmAI	GTCTC	1 cut(s)	1853
BsmFI	GGGAC	1 cut(s)	1439
BsnI	GGCC	8 cut(s)	436, 523, 571, 710, 802, 1634, 1660, 1974
Bso31I	GGTCTC	1 cut(s)	1853
BsoBI	CYCGRG	1 cut(s)	525
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	906, 1342
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	433, 511, 746, 1780, 2002
BspANI	GGCC	8 cut(s)	436, 523, 571, 710, 802, 1634, 1660, 1974
BspFNI	CGCG	1 cut(s)	1785
BspHI	TCATGA	1 cut(s)	2209
BspLI	GGNNCC	7 cut(s)	345, 424, 1427, 1428, 1542, 1707, 1763
BspPI	GGATC	3 cut(s)	40, 502, 1016
BspT104I	TTCGAA	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	1853
BsrBI	CCGCTC	1 cut(s)	2002
BsrDI	GCAATG	4 cut(s)	520, 1741, 2184, 2227
BsrFI	RCCGGY	2 cut(s)	155, 1758
BsrI	ACTGG	3 cut(s)	63, 248, 572
BssAI	RCCGGY	2 cut(s)	155, 1758
BssECI	CCNNGG	4 cut(s)	47, 180, 198, 560
BssNI	GRCGYC	1 cut(s)	679
BssT1I	CCWWGG	2 cut(s)	47, 180
Bst2UI	CCWGG	1 cut(s)	2022
Bst4CI	ACNGT	4 cut(s)	360, 564, 1234, 1750
BstACI	GRCGYC	1 cut(s)	679
BstAPI	GCANNNNNTGC	3 cut(s)	662, 1680, 1740
BstBAI	YACGTR	1 cut(s)	2274
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	6 cut(s)	57, 327, 438, 870, 874, 2148
BstDSI	CCRYGG	2 cut(s)	47, 560
BstENI	CCTNNNNNAGG	1 cut(s)	1968
BstF5I	GGATG	5 cut(s)	175, 1279, 1670, 1683, 2227
BstFNI	CGCG	1 cut(s)	1785
BstH2I	RGCGCY	2 cut(s)	1141, 1759
BstHHI	GCGC	4 cut(s)	1140, 1368, 1758, 1785
BstMAI	GTCTC	1 cut(s)	1853
BstMWI	GCNNNNNNNGC	9 cut(s)	662, 944, 1016, 1372, 1589, 1680, 1740, 1840, 2089
BstNI	CCWGG	1 cut(s)	2022
BstNSI	RCATGY	1 cut(s)	1728
BstSCI	CCNGG	3 cut(s)	904, 1660, 2020
BstSFI	CTRYAG	2 cut(s)	593, 1308
BstSLI	GKGCMC	1 cut(s)	1342
BstUI	CGCG	1 cut(s)	1785
BstV1I	GCAGC	6 cut(s)	1463, 1516, 1843, 1846, 2095, 2155
BstX2I	RGATCY	6 cut(s)	32, 507, 1021, 1159, 1483, 2011
BstXI	CCANNNNNNTGG	1 cut(s)	567
BstYI	RGATCY	6 cut(s)	32, 507, 1021, 1159, 1483, 2011
BsuRI	GGCC	8 cut(s)	436, 523, 571, 710, 802, 1634, 1660, 1974
BtgI	CCRYGG	2 cut(s)	47, 560
BtsCI	GGATG	5 cut(s)	175, 1279, 1670, 1683, 2227
BtsIMutI	CAGTG	1 cut(s)	1755
Cac8I	GCNNGC	6 cut(s)	57, 327, 438, 870, 874, 2148
CaiI	CAGNNNCTG	1 cut(s)	2033
CciI	TCATGA	1 cut(s)	2209
CfoI	GCGC	4 cut(s)	1140, 1368, 1758, 1785
Cfr10I	RCCGGY	2 cut(s)	155, 1758
Cfr13I	GGNCC	8 cut(s)	38, 801, 1277, 1426, 1540, 1659, 1706, 1912
Csp6I	GTAC	6 cut(s)	44, 374, 468, 565, 1029, 1767
CviQI	GTAC	6 cut(s)	44, 374, 468, 565, 1029, 1767
DraI	TTTAAA	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	1346
DriI	GACNNNNNGTC	1 cut(s)	891
Eam1105I	GACNNNNNGTC	1 cut(s)	891
Eco130I	CCWWGG	2 cut(s)	47, 180
Eco147I	AGGCCT	2 cut(s)	523, 710
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	1853
Eco32I	GATATC	1 cut(s)	2075
Eco47I	GGWCC	6 cut(s)	38, 1277, 1426, 1540, 1706, 1912
Eco57I	CTGAAG	3 cut(s)	756, 1193, 2238
Eco88I	CYCGRG	1 cut(s)	525
EcoNI	CCTNNNNNAGG	1 cut(s)	1968
EcoO109I	RGGNCCY	4 cut(s)	1426, 1540, 1706, 1912
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	2020
EcoRV	GATATC	1 cut(s)	2075
EcoT14I	CCWWGG	2 cut(s)	47, 180
EcoT22I	ATGCAT	3 cut(s)	287, 1676, 1730
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	2 cut(s)	47, 180
FalI	AAGNNNNNCTT	6 cut(s)	216, 248, 1188, 1220, 1473, 1505
FaqI	GGGAC	1 cut(s)	1439
FauI	CCCGC	1 cut(s)	1995
FauNDI	CATATG	1 cut(s)	115
FbaI	TGATCA	3 cut(s)	583, 955, 2224
Fnu4HI	GCNGC	8 cut(s)	434, 1452, 1530, 1781, 1832, 1835, 2084, 2144
FokI	GGATG	5 cut(s)	162, 1286, 1670, 1677, 2214
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	8 cut(s)	434, 1452, 1530, 1781, 1832, 1835, 2084, 2144
FspBI	CTAG	5 cut(s)	573, 1026, 1589, 1695, 1850
GlaI	GCGC	4 cut(s)	1139, 1367, 1757, 1784
GluI	GCNGC	8 cut(s)	434, 1452, 1530, 1781, 1832, 1835, 2084, 2144
GsaI	CCCAGC	2 cut(s)	669, 1622
GsuI	CTGGAG	2 cut(s)	627, 2172
HaeII	RGCGCY	2 cut(s)	1141, 1759
HaeIII	GGCC	8 cut(s)	436, 523, 571, 710, 802, 1634, 1660, 1974
HapII	CCGG	4 cut(s)	156, 906, 1662, 1759
HhaI	GCGC	4 cut(s)	1140, 1368, 1758, 1785
Hin1I	GRCGYC	1 cut(s)	679
Hin6I	GCGC	4 cut(s)	1138, 1366, 1756, 1783
HinP1I	GCGC	4 cut(s)	1138, 1366, 1756, 1783
HincII	GTYRAC	2 cut(s)	1464, 2103
HindII	GTYRAC	2 cut(s)	1464, 2103
HindIII	AAGCTT	2 cut(s)	1557, 2250
HinfI	GANTC	6 cut(s)	19, 611, 761, 1330, 1610, 2030
HpaII	CCGG	4 cut(s)	156, 906, 1662, 1759
HphI	GGTGA	9 cut(s)	170, 509, 1055, 1252, 1334, 1619, 2010, 2129, 2168
Hpy166II	GTNNAC	4 cut(s)	229, 1404, 1464, 2103
Hpy188III	TCNNGA	7 cut(s)	273, 587, 606, 959, 1098, 1457, 2210
Hpy8I	GTNNAC	4 cut(s)	229, 1404, 1464, 2103
HpyAV	CCTTC	8 cut(s)	331, 452, 731, 927, 1241, 1397, 1598, 1696
HpyCH4III	ACNGT	4 cut(s)	360, 564, 1234, 1750
HpyCH4IV	ACGT	3 cut(s)	679, 1769, 2273
HpyF10VI	GCNNNNNNNGC	9 cut(s)	662, 944, 1016, 1372, 1589, 1680, 1740, 1840, 2089
HpySE526I	ACGT	3 cut(s)	679, 1769, 2273
Hsp92I	GRCGYC	1 cut(s)	679
HspAI	GCGC	4 cut(s)	1138, 1366, 1756, 1783
KflI	GGGWCCC	1 cut(s)	1426
Ksp22I	TGATCA	3 cut(s)	583, 955, 2224
LmnI	GCTCC	4 cut(s)	289, 1079, 1516, 2058
Lsp1109I	GCAGC	6 cut(s)	1463, 1516, 1843, 1846, 2095, 2155
LweI	GCATC	9 cut(s)	523, 652, 997, 1631, 1655, 1692, 1737, 1767, 2050
MaeI	CTAG	5 cut(s)	573, 1026, 1589, 1695, 1850
MaeII	ACGT	3 cut(s)	679, 1769, 2273
MaeIII	GTNAC	7 cut(s)	415, 552, 838, 883, 1055, 1611, 1874
MbiI	CCGCTC	1 cut(s)	2002
MfeI	CAATTG	2 cut(s)	237, 863
MflI	RGATCY	6 cut(s)	32, 507, 1021, 1159, 1483, 2011
MhlI	GDGCHC	2 cut(s)	906, 1342
MlyI	GAGTC	2 cut(s)	13, 1619
MmeI	TCCRAC	2 cut(s)	1779, 1979
Mph1103I	ATGCAT	3 cut(s)	287, 1676, 1730
MroXI	GAANNNNTTC	1 cut(s)	937
MseI	TTAA	8 cut(s)	141, 150, 218, 308, 750, 1380, 1772, 1938
MslI	CAYNNNNRTG	2 cut(s)	1005, 2214
MspI	CCGG	4 cut(s)	156, 906, 1662, 1759
MspR9I	CCNGG	3 cut(s)	906, 1662, 2022
MunI	CAATTG	2 cut(s)	237, 863
MvaI	CCWGG	1 cut(s)	2022
MvnI	CGCG	1 cut(s)	1785
MwoI	GCNNNNNNNGC	9 cut(s)	662, 944, 1016, 1372, 1589, 1680, 1740, 1840, 2089
NciI	CCSGG	2 cut(s)	906, 1662
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	115
NlaIV	GGNNCC	7 cut(s)	345, 424, 1427, 1428, 1542, 1707, 1763
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	883, 1611
NsiI	ATGCAT	3 cut(s)	287, 1676, 1730
NspI	RCATGY	1 cut(s)	1728
NspV	TTCGAA	1 cut(s)	764
PaeR7I	CTCGAG	1 cut(s)	525
PagI	TCATGA	1 cut(s)	2209
PceI	AGGCCT	2 cut(s)	523, 710
PdmI	GAANNNNTTC	1 cut(s)	937
PfeI	GAWTC	4 cut(s)	611, 761, 1330, 2030
Pfl23II	CGTACG	1 cut(s)	1766
PflMI	CCANNNNNTGG	2 cut(s)	181, 1286
PkrI	GCNGC	8 cut(s)	435, 1453, 1531, 1782, 1833, 1836, 2085, 2145
PleI	GAGTC	2 cut(s)	13, 1618
PpsI	GAGTC	2 cut(s)	13, 1618
Ppu21I	YACGTR	1 cut(s)	2274
PpuMI	RGGWCCY	4 cut(s)	1426, 1540, 1706, 1912
PshBI	ATTAAT	2 cut(s)	141, 218
PsiI	TTATAA	1 cut(s)	1968
Psp5II	RGGWCCY	4 cut(s)	1426, 1540, 1706, 1912
Psp6I	CCWGG	1 cut(s)	2020
PspFI	CCCAGC	2 cut(s)	665, 1618
PspGI	CCWGG	1 cut(s)	2020
PspLI	CGTACG	1 cut(s)	1766
PspN4I	GGNNCC	7 cut(s)	345, 424, 1427, 1428, 1542, 1707, 1763
PspPI	GGNCC	8 cut(s)	38, 801, 1277, 1426, 1540, 1659, 1706, 1912
PspPPI	RGGWCCY	4 cut(s)	1426, 1540, 1706, 1912
PspXI	VCTCGAGB	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	2033
PsuI	RGATCY	6 cut(s)	32, 507, 1021, 1159, 1483, 2011
RsaI	GTAC	6 cut(s)	45, 375, 469, 566, 1030, 1768
RsaNI	GTAC	6 cut(s)	44, 374, 468, 565, 1029, 1767
RseI	CAYNNNNRTG	2 cut(s)	1005, 2214
SaqAI	TTAA	8 cut(s)	141, 150, 218, 308, 750, 1380, 1772, 1938
SatI	GCNGC	8 cut(s)	434, 1452, 1530, 1781, 1832, 1835, 2084, 2144
Sau96I	GGNCC	8 cut(s)	38, 801, 1277, 1426, 1540, 1659, 1706, 1912
SchI	GAGTC	2 cut(s)	13, 1619
ScrFI	CCNGG	3 cut(s)	906, 1662, 2022
SduI	GDGCHC	2 cut(s)	906, 1342
SfaNI	GCATC	9 cut(s)	523, 652, 997, 1631, 1655, 1692, 1737, 1767, 2050
SfcI	CTRYAG	2 cut(s)	593, 1308
Sfr274I	CTCGAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	6 cut(s)	38, 1277, 1426, 1540, 1706, 1912
SlaI	CTCGAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	1005, 2214
SmlI	CTYRAG	4 cut(s)	525, 1194, 1455, 1916
SmoI	CTYRAG	4 cut(s)	525, 1194, 1455, 1916
SseBI	AGGCCT	2 cut(s)	523, 710
SsiI	CCGC	5 cut(s)	433, 511, 746, 1780, 2002
SspMI	CTAG	5 cut(s)	573, 1026, 1589, 1695, 1850
StuI	AGGCCT	2 cut(s)	523, 710
StyD4I	CCNGG	3 cut(s)	904, 1660, 2020
StyI	CCWWGG	2 cut(s)	47, 180
TaaI	ACNGT	4 cut(s)	360, 564, 1234, 1750
TaiI	ACGT	3 cut(s)	682, 1772, 2276
TaqI	TCGA	4 cut(s)	526, 764, 895, 1099
TatI	WGTACW	1 cut(s)	1028
TauI	GCSGC	2 cut(s)	436, 1783
TfiI	GAWTC	4 cut(s)	611, 761, 1330, 2030
Tru1I	TTAA	8 cut(s)	141, 150, 218, 308, 750, 1380, 1772, 1938
Tru9I	TTAA	8 cut(s)	141, 150, 218, 308, 750, 1380, 1772, 1938
TscAI	CASTG	1 cut(s)	1755
TseFI	GTSAC	2 cut(s)	883, 1611
TseI	GCWGC	6 cut(s)	1451, 1529, 1831, 1834, 2083, 2143
Tsp45I	GTSAC	2 cut(s)	883, 1611
TspDTI	ATGAA	3 cut(s)	78, 236, 291
TspGWI	ACGGA	2 cut(s)	540, 1754
TspRI	CASTG	1 cut(s)	1755
Van91I	CCANNNNNTGG	2 cut(s)	181, 1286
VpaK11BI	GGWCC	6 cut(s)	38, 1277, 1426, 1540, 1706, 1912
VspI	ATTAAT	2 cut(s)	141, 218
XagI	CCTNNNNNAGG	1 cut(s)	1968
XapI	RAATTY	2 cut(s)	268, 616
XceI	RCATGY	1 cut(s)	1728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1694
XhoI	CTCGAG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	937
XspI	CTAG	5 cut(s)	573, 1026, 1589, 1695, 1850
ZraI	GACGTC	1 cut(s)	680
Zsp2I	ATGCAT	3 cut(s)	287, 1676, 1730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.