Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005133

Physical Location & Seq

Genomic Coordinates Forward (+)

4051040 .. 4059408

Gene Structure 8369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG048500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGCTTAGTAATGATACTGAAATATTTTCTCTTTTTTCCTTATGTGAGTCAAGTCTCATTTATGAAGAAGGAAGATTTTGCGAGACTTTTCATGTGAAAGCTTCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGGGTTCATTGTGGATGTATCGCTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGCGTAACATGTGCAAGGAAACATATTGTTTTGACATCAAATCCAGCATGGGCACCAACTTTGTTCTTTCATTCACCTTTATCTGATAGACTGAAGGACATGTCTGGCAAAAATTGGACTCAGTTGGCTGGATCTGGTCCTGTACCATGGAGGCAAGCACCCAGTTTATTCAATTCTTCAATTTCTTCATCTGAGTTGCATGGGAGGTTGCCATATGATGTTGATGGTTCAATGGGAATTAATAAACTTAATGCCGGTGAAAGAGTATCAGTCCATCCCTTGGAAAAGAAGAAAGCCGAGGATTTCTCTGAAAGATTAATGAAAGTGAACCTTGCAATTGGCACACCAGTTAGTTTTGAAAATGGGAATTCAGGAAATAAATGCATGGAGCAAAGCAGTTCATGTTTAAATATATCTCAACAGCCTGCCTCTTTGAAGGAGGAACCATCTACTCCACAGTTTGTCCTGTCTGTACCTTATGTATCAGCAAGTGAAACAAATGGTCAAGTGGTAGTTACGGGAACCAATTTGCGGCCTGCCCTTCCTATGGTAAAGCAGTTCAATGGTACTTTACATAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCAATGCAAGGCCTCGAGCAGATGCACGGGGAAGAAGTCCGTTACTTCCACGGTACTGGCCTAGATTTACTGATCAAGAGCTACAGCAAATGTCTGGAGATTCAAATTCTGTCATTACTCCATTATTTGAGAAAATGCTGAGCGCAAGTGATGCTGGGAGGATTGGACGTCTGGTGTTGCCAAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCAGCCTGAAGGATTACCGCTTAAAGTCCAAGATTCGAAAGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCTGGCGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGGAGGGCTTCAACTGCCCCATCTGATCAGGAAAATGATACAAACAAGATGGGGAATGGAGTTTCAGCCCATGTAGATGTTAGTATAACAGATACCAAATCTGGTGAAGTTTTTTCAAATGCTGAATTGGCAGATCCTAGTACATTTCCCAAAGGTGATAAGTCAAGTTACATATCAAAAGAAGTAGAGGGAGCTAAATCTTTGATCTCTCGAAAAAGGAAAAATAGCAACTTGGGGTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGATCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAACCATGTTCCTACTGTTGTGGTGATTGAAGGTTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGACACTTTATGCTACAGGAAGTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGTAAGTGGCGCAAATTGCCTGTTAATGCCCTTCTTCCCTCAAAGTGGAGTTGCTCAGATAACTTATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAACAGAACAGCTTGAAGATCTGCTTCCCCGTTGTAATTCAGTTGCTCCTAAGAAAATAAGGGCTGCTAAACAGGACCCAGATAACATTGAAGCTTTGGAGGGGCTTGATACACTTGCAAACCTAGCTATCTTGGGAGAAGGTGAGTCACTCCCAGCATCAGCTCAGGCCACAACAAAGCACCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCTAGTGGGAAGGGTCCTAAACACAAGCAAACGTGCATCTGCAATGTATGCTCAACAGTGAAGCGCCGGTTCCGTACGTTAATGATGCGACGCGAGAAGAATAAGTCGGAGAAAGAAGCAGAAACTACACGCAAAAAGCAGCAGCAACAGCAATTACTAGACGATGAGACCCTCTTATGTGGTAACGCAGGAAGTAGCAGTCCAAACAACAAAGTGGAGGTCCTTGAGCTTTCTGATGATGACCTTAACAGGACGAAATCTCCGACTCCACCTTATAAAGGCCAAATTGATCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGCGTGATAAAGTTGCTCCAAGATGCCACAGAAAGGTATCTCAGGCAGCAGAGGCAGAGTTTGTCAACCTCTGGTGGTGGTGAAAGATCAATGGGCAACAAGTCGCAGCGAGCTGGAGGTGAAGCAGGGGGAGAACCACTTGGCAACATTGCAATTCTTGGGAATAGCAATCATGATAGTGGCAATGATCATCCTGCAACTTTATCTGTCAAAGCTTCAGCTTCCATGACAGCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

872

Amino Acids

95.44

Weight (kDa)

7.67

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	29 - 76	6.3e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	313 - 413	2.7e-16	B3 DNA binding domain
zf-CW	PF07496	559 - 601	1.2e-08	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21550 AT4G21550 AT4G21550
fragaria_vesca	FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120
malus_domestica	MD05G1324700.v1.1 MD10G1302500.v1.1
prunus_persica	Prupe.4G036100_v2.0.a1
pyrus_communis	pycom05g29890 pycom10g25500
rosa_chinensis	RchiOBHm_Chr5g0006571
rosa_laevigata	RLG00000031400
rosa_multiflora	Rmu_sc0007807.1_g000001 Rmu_sc0011154.1_g000008 Rmu_sc0011154.1_g000009
rosa_roxburghii	Rroxscaffold_1G00069470
rosa_rugosa	Rorug04G0422600.1 Rorug04G0422700
rosa_samantha	Rh5AG049800 Rh5BG049100 Rh5CG057400 Rh5DG048500
rosa_wichuraiana	Rw5G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2310
AatII	GACGTC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	2 cut(s)	481, 1628
AccBSI	CCGCTC	1 cut(s)	2344
AccII	CGCG	1 cut(s)	2127
AciI	CCGC	5 cut(s)	136, 733, 811, 1046, 2344
AclWI	GGATC	5 cut(s)	179, 192, 340, 802, 1358
AcsI	RAATTY	2 cut(s)	568, 916
AcuI	CTGAAG	5 cut(s)	144, 314, 1056, 1535, 2580
AcyI	GRCGYC	1 cut(s)	979
AdeI	CACNNNGTG	1 cut(s)	1688
AfaI	GTAC	6 cut(s)	345, 675, 769, 866, 1372, 2110
AflIII	ACRYGT	2 cut(s)	209, 300
AhdI	GACNNNNNGTC	1 cut(s)	1191
AjnI	CCWGG	2 cut(s)	187, 2362
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
Alw26I	GTCTC	3 cut(s)	59, 77, 2195
AlwI	GGATC	5 cut(s)	179, 192, 340, 802, 1358
AlwNI	CAGNNNCTG	1 cut(s)	2375
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	8 cut(s)	734, 821, 869, 1008, 1100, 1974, 2000, 2314
ApeKI	GCWGC	6 cut(s)	1793, 1871, 2173, 2176, 2425, 2485
ApoI	RAATTY	2 cut(s)	568, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	2238, 2270
AseI	ATTAAT	2 cut(s)	441, 518
AspLEI	GCGC	4 cut(s)	956, 1482, 1710, 2100
AspS9I	GGNCC	8 cut(s)	338, 1101, 1619, 1768, 1882, 2001, 2048, 2254
AsuC2I	CCSGG	2 cut(s)	1206, 2004
AsuII	TTCGAA	1 cut(s)	1064
AvaI	CYCGRG	1 cut(s)	825
AvaII	GGWCC	6 cut(s)	338, 1619, 1768, 1882, 2048, 2254
BaeGI	GKGCMC	2 cut(s)	256, 1684
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	1206
BbvI	GCAGC	6 cut(s)	1805, 1858, 2185, 2188, 2437, 2497
BccI	CCATC	6 cut(s)	419, 483, 655, 1258, 1273, 1610
BciT130I	CCWGG	2 cut(s)	189, 2364
BclI	TGATCA	3 cut(s)	883, 1255, 2566
BcnI	CCSGG	2 cut(s)	1206, 2004
BcoDI	GTCTC	3 cut(s)	59, 77, 2195
BfaI	CTAG	5 cut(s)	873, 1368, 1931, 2037, 2192
BfmI	CTRYAG	2 cut(s)	893, 1650
BfoI	RGCGCY	2 cut(s)	1483, 2101
BglII	AGATCT	3 cut(s)	1501, 1825, 2353
BisI	GCNGC	7 cut(s)	734, 1794, 1872, 2174, 2177, 2426, 2486
BlpI	GCTNAGC	1 cut(s)	950
BlsI	GCNGC	7 cut(s)	735, 1795, 1873, 2175, 2178, 2427, 2487
Bme1390I	CCNGG	4 cut(s)	189, 1206, 2004, 2364
Bme18I	GGWCC	6 cut(s)	338, 1619, 1768, 1882, 2048, 2254
BmeRI	GACNNNNNGTC	1 cut(s)	1191
BmeT110I	CYCGRG	1 cut(s)	825
BmgT120I	GGNCC	8 cut(s)	338, 1101, 1619, 1768, 1882, 2001, 2048, 2254
BmiI	GGNNCC	9 cut(s)	186, 255, 645, 724, 1769, 1770, 1884, 2049, 2105
BmrFI	CCNGG	4 cut(s)	189, 1206, 2004, 2364
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	8 cut(s)	823, 952, 1973, 1997, 2034, 2079, 2109, 2392
BmuI	ACTGGG	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	3 cut(s)	210, 927, 2514
Bpu10I	CCTNAGC	1 cut(s)	1971
Bpu1102I	GCTNAGC	1 cut(s)	950
Bpu14I	TTCGAA	1 cut(s)	1064
BpuEI	CTTGAG	4 cut(s)	150, 1521, 1782, 2279
BpuMI	CCSGG	2 cut(s)	1206, 2004
BsaAI	YACGTR	1 cut(s)	2616
BsaHI	GRCGYC	1 cut(s)	979
BsaI	GGTCTC	1 cut(s)	2195
BsaJI	CCNNGG	4 cut(s)	347, 480, 498, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 2278, 2308
Bse118I	RCCGGY	2 cut(s)	455, 2100
Bse1I	ACTGG	3 cut(s)	363, 548, 872
Bse3DI	GCAATG	4 cut(s)	820, 2083, 2526, 2569
BseBI	CCWGG	2 cut(s)	189, 2364
BseDI	CCNNGG	4 cut(s)	347, 480, 498, 860
BseGI	GGATG	6 cut(s)	155, 475, 1621, 2012, 2025, 2569
BseMI	GCAATG	4 cut(s)	820, 2083, 2526, 2569
BseNI	ACTGG	3 cut(s)	363, 548, 872
BseRI	GAGGAG	1 cut(s)	1545
BseSI	GKGCMC	2 cut(s)	256, 1684
BseXI	GCAGC	6 cut(s)	1805, 1858, 2185, 2188, 2437, 2497
BseYI	CCCAGC	2 cut(s)	965, 1960
BsgI	GTGCAG	2 cut(s)	1023, 1249
Bsh1236I	CGCG	1 cut(s)	2127
BshFI	GGCC	8 cut(s)	736, 823, 871, 1010, 1102, 1976, 2002, 2316
BshNI	GGYRCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	825
BsiSI	CCGG	4 cut(s)	456, 1206, 2004, 2101
BsiWI	CGTACG	1 cut(s)	2108
BslFI	GGGAC	1 cut(s)	1781
BsmAI	GTCTC	3 cut(s)	59, 77, 2195
BsmFI	GGGAC	1 cut(s)	1781
BsnI	GGCC	8 cut(s)	736, 823, 871, 1010, 1102, 1976, 2002, 2316
Bso31I	GGTCTC	1 cut(s)	2195
BsoBI	CYCGRG	1 cut(s)	825
Bsp119I	TTCGAA	1 cut(s)	1064
Bsp1286I	GDGCHC	3 cut(s)	256, 1206, 1684
Bsp1720I	GCTNAGC	1 cut(s)	950
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	5 cut(s)	136, 733, 811, 1046, 2344
BspANI	GGCC	8 cut(s)	736, 823, 871, 1010, 1102, 1976, 2002, 2316
BspFNI	CGCG	1 cut(s)	2127
BspHI	TCATGA	1 cut(s)	2551
BspLI	GGNNCC	9 cut(s)	186, 255, 645, 724, 1769, 1770, 1884, 2049, 2105
BspPI	GGATC	5 cut(s)	179, 192, 340, 802, 1358
BspT104I	TTCGAA	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	2195
BsrBI	CCGCTC	1 cut(s)	2344
BsrDI	GCAATG	4 cut(s)	820, 2083, 2526, 2569
BsrFI	RCCGGY	2 cut(s)	455, 2100
BsrI	ACTGG	3 cut(s)	363, 548, 872
BssAI	RCCGGY	2 cut(s)	455, 2100
BssECI	CCNNGG	4 cut(s)	347, 480, 498, 860
BssNI	GRCGYC	1 cut(s)	979
BssT1I	CCWWGG	2 cut(s)	347, 480
Bst2UI	CCWGG	2 cut(s)	189, 2364
Bst4CI	ACNGT	4 cut(s)	660, 864, 1576, 2092
BstACI	GRCGYC	1 cut(s)	979
BstAPI	GCANNNNNTGC	3 cut(s)	962, 2022, 2082
BstBAI	YACGTR	1 cut(s)	2616
BstBI	TTCGAA	1 cut(s)	1064
BstC8I	GCNNGC	6 cut(s)	357, 627, 738, 1170, 1174, 2490
BstDSI	CCRYGG	2 cut(s)	347, 860
BstENI	CCTNNNNNAGG	1 cut(s)	2310
BstF5I	GGATG	6 cut(s)	155, 475, 1621, 2012, 2025, 2569
BstFNI	CGCG	1 cut(s)	2127
BstH2I	RGCGCY	2 cut(s)	1483, 2101
BstHHI	GCGC	4 cut(s)	956, 1482, 1710, 2100
BstMAI	GTCTC	3 cut(s)	59, 77, 2195
BstMWI	GCNNNNNNNGC	9 cut(s)	962, 1244, 1358, 1714, 1931, 2022, 2082, 2182, 2431
BstNI	CCWGG	2 cut(s)	189, 2364
BstNSI	RCATGY	2 cut(s)	213, 304
BstSCI	CCNGG	4 cut(s)	187, 1204, 2002, 2362
BstSFI	CTRYAG	2 cut(s)	893, 1650
BstSLI	GKGCMC	2 cut(s)	256, 1684
BstUI	CGCG	1 cut(s)	2127
BstV1I	GCAGC	6 cut(s)	1805, 1858, 2185, 2188, 2437, 2497
BstX2I	RGATCY	7 cut(s)	184, 332, 807, 1363, 1501, 1825, 2353
BstXI	CCANNNNNNTGG	1 cut(s)	867
BstYI	RGATCY	7 cut(s)	184, 332, 807, 1363, 1501, 1825, 2353
BsuRI	GGCC	8 cut(s)	736, 823, 871, 1010, 1102, 1976, 2002, 2316
BtgI	CCRYGG	2 cut(s)	347, 860
BtsCI	GGATG	6 cut(s)	155, 475, 1621, 2012, 2025, 2569
BtsIMutI	CAGTG	1 cut(s)	2097
Cac8I	GCNNGC	6 cut(s)	357, 627, 738, 1170, 1174, 2490
CaiI	CAGNNNCTG	1 cut(s)	2375
CciI	TCATGA	1 cut(s)	2551
CfoI	GCGC	4 cut(s)	956, 1482, 1710, 2100
Cfr10I	RCCGGY	2 cut(s)	455, 2100
Cfr13I	GGNCC	8 cut(s)	338, 1101, 1619, 1768, 1882, 2001, 2048, 2254
CseI	GACGC	1 cut(s)	2133
Csp6I	GTAC	6 cut(s)	344, 674, 768, 865, 1371, 2109
CviQI	GTAC	6 cut(s)	344, 674, 768, 865, 1371, 2109
DraI	TTTAAA	1 cut(s)	609
DraIII	CACNNNGTG	1 cut(s)	1688
DriI	GACNNNNNGTC	1 cut(s)	1191
Eam1105I	GACNNNNNGTC	1 cut(s)	1191
Eco130I	CCWWGG	2 cut(s)	347, 480
Eco147I	AGGCCT	2 cut(s)	823, 1010
Eco24I	GRGCYC	1 cut(s)	1206
Eco31I	GGTCTC	1 cut(s)	2195
Eco47I	GGWCC	6 cut(s)	338, 1619, 1768, 1882, 2048, 2254
Eco57I	CTGAAG	5 cut(s)	144, 314, 1056, 1535, 2580
Eco88I	CYCGRG	1 cut(s)	825
EcoNI	CCTNNNNNAGG	1 cut(s)	2310
EcoO109I	RGGNCCY	4 cut(s)	1768, 1882, 2048, 2254
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	187, 2362
EcoT14I	CCWWGG	2 cut(s)	347, 480
EcoT22I	ATGCAT	2 cut(s)	587, 2018
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	2 cut(s)	347, 480
FalI	AAGNNNNNCTT	6 cut(s)	516, 548, 1530, 1562, 1815, 1847
FaqI	GGGAC	1 cut(s)	1781
FauI	CCCGC	2 cut(s)	129, 2337
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	3 cut(s)	883, 1255, 2566
Fnu4HI	GCNGC	7 cut(s)	734, 1794, 1872, 2174, 2177, 2426, 2486
FokI	GGATG	6 cut(s)	162, 462, 1628, 2012, 2019, 2556
FriOI	GRGCYC	1 cut(s)	1206
Fsp4HI	GCNGC	7 cut(s)	734, 1794, 1872, 2174, 2177, 2426, 2486
FspBI	CTAG	5 cut(s)	873, 1368, 1931, 2037, 2192
GlaI	GCGC	4 cut(s)	955, 1481, 1709, 2099
GluI	GCNGC	7 cut(s)	734, 1794, 1872, 2174, 2177, 2426, 2486
GsaI	CCCAGC	2 cut(s)	969, 1964
GsuI	CTGGAG	3 cut(s)	210, 927, 2514
HaeII	RGCGCY	2 cut(s)	1483, 2101
HaeIII	GGCC	8 cut(s)	736, 823, 871, 1010, 1102, 1976, 2002, 2316
HapII	CCGG	4 cut(s)	456, 1206, 2004, 2101
HgaI	GACGC	1 cut(s)	2133
HhaI	GCGC	4 cut(s)	956, 1482, 1710, 2100
Hin1I	GRCGYC	1 cut(s)	979
Hin6I	GCGC	4 cut(s)	954, 1480, 1708, 2098
HinP1I	GCGC	4 cut(s)	954, 1480, 1708, 2098
HincII	GTYRAC	2 cut(s)	1806, 2445
HindII	GTYRAC	2 cut(s)	1806, 2445
HindIII	AAGCTT	3 cut(s)	99, 1899, 2592
HinfI	GANTC	9 cut(s)	47, 122, 319, 911, 1061, 1672, 1952, 2299, 2372
HpaII	CCGG	4 cut(s)	456, 1206, 2004, 2101
Hpy166II	GTNNAC	3 cut(s)	529, 1806, 2445
Hpy188III	TCNNGA	7 cut(s)	573, 887, 906, 1259, 1440, 1799, 2552
Hpy8I	GTNNAC	3 cut(s)	529, 1806, 2445
Hpy99I	CGWCG	1 cut(s)	2127
HpyAV	CCTTC	9 cut(s)	62, 289, 631, 752, 1031, 1583, 1739, 1940, 2038
HpyCH4III	ACNGT	4 cut(s)	660, 864, 1576, 2092
HpyCH4IV	ACGT	4 cut(s)	979, 2066, 2111, 2615
HpyF10VI	GCNNNNNNNGC	9 cut(s)	962, 1244, 1358, 1714, 1931, 2022, 2082, 2182, 2431
HpySE526I	ACGT	4 cut(s)	979, 2066, 2111, 2615
Hsp92I	GRCGYC	1 cut(s)	979
HspAI	GCGC	4 cut(s)	954, 1480, 1708, 2098
KflI	GGGWCCC	1 cut(s)	1768
Ksp22I	TGATCA	3 cut(s)	883, 1255, 2566
LmnI	GCTCC	4 cut(s)	589, 1421, 1858, 2400
Lsp1109I	GCAGC	6 cut(s)	1805, 1858, 2185, 2188, 2437, 2497
LweI	GCATC	8 cut(s)	823, 952, 1973, 1997, 2034, 2079, 2109, 2392
MaeI	CTAG	5 cut(s)	873, 1368, 1931, 2037, 2192
MaeII	ACGT	4 cut(s)	979, 2066, 2111, 2615
MaeIII	GTNAC	8 cut(s)	205, 715, 852, 1138, 1183, 1397, 1953, 2216
MbiI	CCGCTC	1 cut(s)	2344
MfeI	CAATTG	2 cut(s)	537, 1163
MflI	RGATCY	7 cut(s)	184, 332, 807, 1363, 1501, 1825, 2353
MhlI	GDGCHC	3 cut(s)	256, 1206, 1684
MlyI	GAGTC	5 cut(s)	56, 131, 313, 1961, 2293
MmeI	TCCRAC	3 cut(s)	162, 2121, 2321
Mph1103I	ATGCAT	2 cut(s)	587, 2018
MseI	TTAA	8 cut(s)	441, 450, 518, 608, 1050, 1722, 2114, 2280
MslI	CAYNNNNRTG	2 cut(s)	1305, 2556
MspI	CCGG	4 cut(s)	456, 1206, 2004, 2101
MspR9I	CCNGG	4 cut(s)	189, 1206, 2004, 2364
MunI	CAATTG	2 cut(s)	537, 1163
MvaI	CCWGG	2 cut(s)	189, 2364
MvnI	CGCG	1 cut(s)	2127
MwoI	GCNNNNNNNGC	9 cut(s)	962, 1244, 1358, 1714, 1931, 2022, 2082, 2182, 2431
NciI	CCSGG	2 cut(s)	1206, 2004
NcoI	CCATGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	415
NlaIV	GGNNCC	9 cut(s)	186, 255, 645, 724, 1769, 1770, 1884, 2049, 2105
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	2 cut(s)	1183, 1953
NsiI	ATGCAT	2 cut(s)	587, 2018
NspI	RCATGY	2 cut(s)	213, 304
NspV	TTCGAA	1 cut(s)	1064
PaeR7I	CTCGAG	1 cut(s)	825
PagI	TCATGA	1 cut(s)	2551
PceI	AGGCCT	2 cut(s)	823, 1010
PciI	ACATGT	2 cut(s)	209, 300
PcsI	WCGNNNNNNNCGW	1 cut(s)	2294
PfeI	GAWTC	4 cut(s)	911, 1061, 1672, 2372
Pfl23II	CGTACG	1 cut(s)	2108
PflMI	CCANNNNNTGG	2 cut(s)	481, 1628
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	7 cut(s)	735, 1795, 1873, 2175, 2178, 2427, 2487
PleI	GAGTC	5 cut(s)	55, 130, 313, 1960, 2293
PpsI	GAGTC	5 cut(s)	55, 130, 313, 1960, 2293
Ppu21I	YACGTR	1 cut(s)	2616
PpuMI	RGGWCCY	4 cut(s)	1768, 1882, 2048, 2254
PscI	ACATGT	2 cut(s)	209, 300
PshBI	ATTAAT	2 cut(s)	441, 518
PsiI	TTATAA	1 cut(s)	2310
Psp5II	RGGWCCY	4 cut(s)	1768, 1882, 2048, 2254
Psp6I	CCWGG	2 cut(s)	187, 2362
PspFI	CCCAGC	2 cut(s)	965, 1960
PspGI	CCWGG	2 cut(s)	187, 2362
PspLI	CGTACG	1 cut(s)	2108
PspN4I	GGNNCC	9 cut(s)	186, 255, 645, 724, 1769, 1770, 1884, 2049, 2105
PspPI	GGNCC	8 cut(s)	338, 1101, 1619, 1768, 1882, 2001, 2048, 2254
PspPPI	RGGWCCY	4 cut(s)	1768, 1882, 2048, 2254
PspXI	VCTCGAGB	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	2375
PsuI	RGATCY	7 cut(s)	184, 332, 807, 1363, 1501, 1825, 2353
RsaI	GTAC	6 cut(s)	345, 675, 769, 866, 1372, 2110
RsaNI	GTAC	6 cut(s)	344, 674, 768, 865, 1371, 2109
RseI	CAYNNNNRTG	2 cut(s)	1305, 2556
SaqAI	TTAA	8 cut(s)	441, 450, 518, 608, 1050, 1722, 2114, 2280
SatI	GCNGC	7 cut(s)	734, 1794, 1872, 2174, 2177, 2426, 2486
Sau96I	GGNCC	8 cut(s)	338, 1101, 1619, 1768, 1882, 2001, 2048, 2254
SchI	GAGTC	5 cut(s)	56, 131, 313, 1961, 2293
ScrFI	CCNGG	4 cut(s)	189, 1206, 2004, 2364
SduI	GDGCHC	3 cut(s)	256, 1206, 1684
SfaNI	GCATC	8 cut(s)	823, 952, 1973, 1997, 2034, 2079, 2109, 2392
SfcI	CTRYAG	2 cut(s)	893, 1650
Sfr274I	CTCGAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	1064
SinI	GGWCC	6 cut(s)	338, 1619, 1768, 1882, 2048, 2254
SlaI	CTCGAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	1305, 2556
SmlI	CTYRAG	5 cut(s)	165, 825, 1536, 1797, 2258
SmoI	CTYRAG	5 cut(s)	165, 825, 1536, 1797, 2258
SseBI	AGGCCT	2 cut(s)	823, 1010
SsiI	CCGC	5 cut(s)	136, 733, 811, 1046, 2344
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	5 cut(s)	873, 1368, 1931, 2037, 2192
StuI	AGGCCT	2 cut(s)	823, 1010
StyD4I	CCNGG	4 cut(s)	187, 1204, 2002, 2362
StyI	CCWWGG	2 cut(s)	347, 480
TaaI	ACNGT	4 cut(s)	660, 864, 1576, 2092
TaiI	ACGT	4 cut(s)	982, 2069, 2114, 2618
TaqI	TCGA	4 cut(s)	826, 1064, 1195, 1441
TatI	WGTACW	1 cut(s)	1370
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	4 cut(s)	911, 1061, 1672, 2372
Tru1I	TTAA	8 cut(s)	441, 450, 518, 608, 1050, 1722, 2114, 2280
Tru9I	TTAA	8 cut(s)	441, 450, 518, 608, 1050, 1722, 2114, 2280
TscAI	CASTG	1 cut(s)	2097
TseFI	GTSAC	2 cut(s)	1183, 1953
TseI	GCWGC	6 cut(s)	1793, 1871, 2173, 2176, 2425, 2485
Tsp45I	GTSAC	2 cut(s)	1183, 1953
TspDTI	ATGAA	7 cut(s)	78, 80, 131, 260, 378, 536, 591
TspGWI	ACGGA	2 cut(s)	840, 2096
TspRI	CASTG	1 cut(s)	2097
Van91I	CCANNNNNTGG	2 cut(s)	481, 1628
VpaK11BI	GGWCC	6 cut(s)	338, 1619, 1768, 1882, 2048, 2254
VspI	ATTAAT	2 cut(s)	441, 518
XagI	CCTNNNNNAGG	1 cut(s)	2310
XapI	RAATTY	2 cut(s)	568, 916
XceI	RCATGY	2 cut(s)	213, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2036
XhoI	CTCGAG	1 cut(s)	825
XspI	CTAG	5 cut(s)	873, 1368, 1931, 2037, 2192
ZraI	GACGTC	1 cut(s)	980
Zsp2I	ATGCAT	2 cut(s)	587, 2018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.