Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005133

Physical Location & Seq

Genomic Coordinates Reverse (-)

90418884 .. 90427164

Gene Structure 8281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGTCGCCGCCGTCCTCGTCTTCTTCCAAGTGCTGCTACAATTCCGAGTGCGGCGAATTGAAGCCGGAGCACCCGAGGAAGGCCTGGCGCCTCCGCACCGGAGACTTCGCCGAGCTCTGCGATCGATGCGCCCTCATTTATGAAGAAGGAAGATTTTGTGAGACTTTTCATGTGAAAGCTTCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGGGTTCATTGTGGATGTATCGTTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGCGTAACATGTGCAAGGAAACATATTGTTTTGACATCAAATCCAGCATGGGCACCAACTTTGTTCTTTCATTCACCCTTATCTGATAGACTGAAGGACATGTCTGGCAAAAATTGGACTCAGTTGGCTGGATCTGGTCCTGTACCATGGAGGCAAGCACCCAGTTTATTCAATTCTTCAATTTCTTCATCTGAATTGCATGGGAGGTTGCCATATGATGTTGATGGTTCAATGGGAATTAATAAACTTAATGCCGGTGAAAGAGTATCAGTCCATCCCTTGGAAAAGAAGAAAGCCGAGGATTTTTCTGAAAGATTAATGAAAGTGAACCTTGCAATTGGCACACCAGTTAGTTTTGAAAATGGGAATTCAGGAAATAAATGCATGGAGCAAAGCAGTTCATGTTTAAATATATCTCAACAGCCTGCCTCTTTGAAGGAGGAACCATCTACTCCACAGTTTGTCCTGTCTGTACCTTATGTATCAGCAAGTGAAACAAATGGTCAAGTGGTAGTTACGGGAACAAATTTGCGGCCTGCCCTTCCTATGGTAAAGCAGTTCAATGGTACTTTACATAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCAATGCAAGGCCTCGAGCAGATGCACGGGGAAGAAGTCCGTTACTTCCACGGTACTGGCCTAGATTTACTGATCAAGAGCTACAGCAAATGTCTGGAGATTCAAATTCTGTCATTACTCCATTATTTGAGAAAATGCTGAGCGCAAGTGATGCTGGGAGGATTGGACGTCTGGTGTTGCCAAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCAGCCAGAAGGATTACCGCTTAAAGTCCAAGATTCGAAAGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATAACTCTGCCAGCACTTCGTGAAGGAGTTCTAGTTGACTTGGTTATAGATGATGATGATGATCTCTTGGTACTGTATTTGACGGATCCTGTTGTGAATATGTGTTTGTGTATACTCTACTGGTTGTCCTTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAGGGCTTCAACTGCCCCATCTGATCAGGAAAATGATACAAACAAGATGGGGAATGGAGTTTCAGCCCATGTAGATGTTAGTATAACAGATACCAAATCTGGTGAAGTTTTTTCAAATGCTGAATTGGCAGATCCTAGTACATTTCCCAAAGGTGATAAGTCAAGTTACATATCAAAAGAAGTAGAGGGAGCTAAATCTTTGATCTCTCGAAAAAGGAAAAATAGCAACTTGGGGTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGATCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAACCATGTTCCTACTGTTGTGGTGATTGAAGGTTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGACACTTTATGCTACAGGAATTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGTAAGTGGCGCAAATTGCCTGTTAATGCCCTTCTTCCCTCAAAGTGGACTTGCTCAGATAACTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAACAGAACAGCTTGAAGATCTGCTTCCCCGTTATAATTCAGCAGTTGCTCCTAAGAAAATAAAGGCTGCTAAACAGGACCCAGATAACATTGAAGCTTTGGAGGGGCTTGATACACTTGCAAACCTAGCTATCTTGGGAGAAGGTGAGTCACTCCCAGCATCAGCTCAGGCCACAACAAAGCACCCCAGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCTAGTGGGAAGGGTCCTAAACACAAGCAAACGTGCATCTGCAATGTATGCTCAACAGTGAAGCGCCGGTTCCGTACGTTAATGATGCGGCGCGAGAAGAATAAGTCGGAGAAAGAAGCAGAAACTACACGCAAAAAGCAGCAGCAACAGCAATTACTAGACGAGGAGACCCTCTTATGTGGTAACGCAGGAAGTAGCGGTAACGCAGGAAGTAGCAGTCCAAACAACAAAGTGGAGGTCCTTGAGCTTTCTGATGATGACTTGAACAAGACGAAATCTCCAACTCCACCTTATAAAGGCCAAATTGACCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGTGTGATAAAGTTGCTCCAAGATGCCACAGAAAGGTATCTCAGGCAGCAGAGGCAGAGTTTGTCAACCTCTGGTGGTGGTGAAAGATCAATGGGCAACAAGTCGCAGCGAGCTGGAGGTGAAGCAGGGGAGAACCACTTAGCAACATTGCAATTCTTGGGAATAGCAATCATGATAGTGGCAATGATCATCCAGCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

915

Amino Acids

100.67

Weight (kDa)

7.62

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	55 - 102	5.2e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	339 - 398	2.7e-07	B3 DNA binding domain
zf-CW	PF07496	607 - 649	2.5e-09	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21550 AT4G21550 AT4G21550
fragaria_vesca	FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120 FvH4_3g04120
malus_domestica	MD05G1324700.v1.1 MD10G1302500.v1.1
prunus_persica	Prupe.4G036100_v2.0.a1
pyrus_communis	pycom05g29890 pycom10g25500
rosa_chinensis	RchiOBHm_Chr5g0006571
rosa_laevigata	RLG00000031400
rosa_multiflora	Rmu_sc0007807.1_g000001 Rmu_sc0011154.1_g000008 Rmu_sc0011154.1_g000009
rosa_roxburghii	Rroxscaffold_1G00069470
rosa_rugosa	Rorug04G0422600.1 Rorug04G0422700
rosa_samantha	Rh5AG049800 Rh5BG049100 Rh5CG057400 Rh5DG048500
rosa_wichuraiana	Rw5G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1986, 2475
AatII	GACGTC	1 cut(s)	1060
AccB1I	GGYRCC	2 cut(s)	87, 331
AccB7I	CCANNNNNTGG	2 cut(s)	559, 1772
AccBSI	CCGCTC	1 cut(s)	2509
AccI	GTMKAC	1 cut(s)	1309
AccII	CGCG	1 cut(s)	2274
AclWI	GGATC	7 cut(s)	257, 270, 418, 880, 1277, 1290, 1502
AcsI	RAATTY	3 cut(s)	646, 805, 994
AcuI	CTGAAG	2 cut(s)	392, 1679
AcyI	GRCGYC	2 cut(s)	88, 1057
AdeI	CACNNNGTG	2 cut(s)	1217, 1832
AfaI	GTAC	7 cut(s)	423, 753, 847, 944, 1269, 1516, 2257
AflIII	ACRYGT	2 cut(s)	287, 378
AhdI	GACNNNNNGTC	1 cut(s)	1335
AjnI	CCWGG	3 cut(s)	83, 265, 2527
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
Alw21I	GWGCWC	2 cut(s)	72, 117
Alw26I	GTCTC	3 cut(s)	96, 155, 2342
AlwI	GGATC	7 cut(s)	257, 270, 418, 880, 1277, 1290, 1502
AlwNI	CAGNNNCTG	1 cut(s)	2540
Ama87I	CYCGRG	2 cut(s)	73, 903
AoxI	GGCC	9 cut(s)	81, 812, 899, 947, 1086, 1178, 2121, 2147, 2479
ApeKI	GCWGC	7 cut(s)	33, 1937, 2018, 2320, 2323, 2590, 2650
ApoI	RAATTY	3 cut(s)	646, 805, 994
ArsI	GACNNNNNNTTYG	2 cut(s)	2403, 2435
AseI	ATTAAT	2 cut(s)	519, 596
Asp700I	GAANNNNTTC	2 cut(s)	1224, 1381
AspLEI	GCGC	7 cut(s)	90, 131, 1034, 1626, 1854, 2247, 2274
AspS9I	GGNCC	8 cut(s)	416, 1179, 1763, 1912, 2029, 2148, 2195, 2419
AsuC2I	CCSGG	2 cut(s)	1350, 2151
AsuII	TTCGAA	1 cut(s)	1142
AvaI	CYCGRG	2 cut(s)	73, 903
AvaII	GGWCC	6 cut(s)	416, 1763, 1912, 2029, 2195, 2419
BaeGI	GKGCMC	2 cut(s)	334, 1828
BamHI	GGATCC	2 cut(s)	262, 1282
BanI	GGYRCC	2 cut(s)	87, 331
BanII	GRGCYC	2 cut(s)	117, 1350
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	72, 117
BbvI	GCAGC	7 cut(s)	20, 1949, 2005, 2332, 2335, 2602, 2662
BccI	CCATC	6 cut(s)	497, 561, 733, 1402, 1417, 1754
BciT130I	CCWGG	3 cut(s)	85, 267, 2529
BclI	TGATCA	3 cut(s)	961, 1399, 2730
BcnI	CCSGG	2 cut(s)	1350, 2151
BcoDI	GTCTC	3 cut(s)	96, 155, 2342
BfaI	CTAG	6 cut(s)	951, 1229, 1512, 2078, 2184, 2339
BfmI	CTRYAG	2 cut(s)	971, 1794
BfoI	RGCGCY	3 cut(s)	91, 1627, 2248
BglII	AGATCT	3 cut(s)	1645, 1969, 2518
BlpI	GCTNAGC	1 cut(s)	1028
Bme1390I	CCNGG	5 cut(s)	85, 267, 1350, 2151, 2529
Bme18I	GGWCC	6 cut(s)	416, 1763, 1912, 2029, 2195, 2419
BmeRI	GACNNNNNGTC	1 cut(s)	1335
BmeT110I	CYCGRG	2 cut(s)	73, 903
BmgT120I	GGNCC	8 cut(s)	416, 1179, 1763, 1912, 2029, 2148, 2195, 2419
BmrFI	CCNGG	5 cut(s)	85, 267, 1350, 2151, 2529
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	9 cut(s)	116, 901, 1030, 2120, 2144, 2181, 2226, 2256, 2557
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	3 cut(s)	288, 1005, 2679
Bpu10I	CCTNAGC	1 cut(s)	2118
Bpu1102I	GCTNAGC	1 cut(s)	1028
Bpu14I	TTCGAA	1 cut(s)	1142
BpuEI	CTTGAG	4 cut(s)	228, 1665, 1926, 2444
BpuMI	CCSGG	2 cut(s)	1350, 2151
Bsa29I	ATCGAT	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	1257
BsaHI	GRCGYC	2 cut(s)	88, 1057
BsaI	GGTCTC	1 cut(s)	2342
BsaJI	CCNNGG	5 cut(s)	74, 425, 558, 576, 938
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	6 cut(s)	181, 211, 1215, 1245, 2443, 2473
Bse118I	RCCGGY	2 cut(s)	533, 2247
Bse1I	ACTGG	4 cut(s)	441, 626, 950, 1322
Bse3DI	GCAATG	4 cut(s)	898, 2230, 2690, 2733
Bse8I	GATNNNNATC	1 cut(s)	1257
BseBI	CCWGG	3 cut(s)	85, 267, 2529
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	5 cut(s)	74, 425, 558, 576, 938
BseGI	GGATG	6 cut(s)	233, 553, 1765, 2159, 2172, 2733
BseJI	GATNNNNATC	1 cut(s)	1257
BseMI	GCAATG	4 cut(s)	898, 2230, 2690, 2733
BseMII	CTCAG	9 cut(s)	413, 896, 1019, 1121, 1619, 1911, 2132, 2547, 2599
BseNI	ACTGG	4 cut(s)	441, 626, 950, 1322
BseRI	GAGGAG	2 cut(s)	1689, 2360
BseSI	GKGCMC	2 cut(s)	334, 1828
BseXI	GCAGC	7 cut(s)	20, 1949, 2005, 2332, 2335, 2602, 2662
BseYI	CCCAGC	2 cut(s)	1043, 2107
BsgI	GTGCAG	2 cut(s)	1101, 1393
Bsh1236I	CGCG	1 cut(s)	2274
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	9 cut(s)	83, 814, 901, 949, 1088, 1180, 2123, 2149, 2481
BshNI	GGYRCC	2 cut(s)	87, 331
BshVI	ATCGAT	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	72, 117
BsiHKCI	CYCGRG	2 cut(s)	73, 903
BsiSI	CCGG	6 cut(s)	65, 99, 534, 1350, 2151, 2248
BsiWI	CGTACG	1 cut(s)	2255
BslFI	GGGAC	1 cut(s)	1925
BsmAI	GTCTC	3 cut(s)	96, 155, 2342
BsmFI	GGGAC	1 cut(s)	1925
BsnI	GGCC	9 cut(s)	83, 814, 901, 949, 1088, 1180, 2123, 2149, 2481
Bso31I	GGTCTC	1 cut(s)	2342
BsoBI	CYCGRG	2 cut(s)	73, 903
Bsp119I	TTCGAA	1 cut(s)	1142
Bsp1286I	GDGCHC	5 cut(s)	72, 117, 334, 1350, 1828
Bsp1720I	GCTNAGC	1 cut(s)	1028
Bsp19I	CCATGG	1 cut(s)	425
BspANI	GGCC	9 cut(s)	83, 814, 901, 949, 1088, 1180, 2123, 2149, 2481
BspCNI	CTCAG	9 cut(s)	412, 895, 1020, 1120, 1620, 1910, 2131, 2546, 2598
BspDI	ATCGAT	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	2274
BspHI	TCATGA	1 cut(s)	2715
BspPI	GGATC	7 cut(s)	257, 270, 418, 880, 1277, 1290, 1502
BspT104I	TTCGAA	1 cut(s)	1142
BspT107I	GGYRCC	2 cut(s)	87, 331
BspTNI	GGTCTC	1 cut(s)	2342
BsrBI	CCGCTC	1 cut(s)	2509
BsrDI	GCAATG	4 cut(s)	898, 2230, 2690, 2733
BsrFI	RCCGGY	2 cut(s)	533, 2247
BsrI	ACTGG	4 cut(s)	441, 626, 950, 1322
BssAI	RCCGGY	2 cut(s)	533, 2247
BssECI	CCNNGG	5 cut(s)	74, 425, 558, 576, 938
BssNAI	GTATAC	1 cut(s)	1310
BssNI	GRCGYC	2 cut(s)	88, 1057
BssT1I	CCWWGG	2 cut(s)	425, 558
Bst1107I	GTATAC	1 cut(s)	1310
Bst2UI	CCWGG	3 cut(s)	85, 267, 2529
Bst4CI	ACNGT	5 cut(s)	738, 942, 1272, 1720, 2239
BstACI	GRCGYC	2 cut(s)	88, 1057
BstAPI	GCANNNNNTGC	3 cut(s)	1040, 2169, 2229
BstBI	TTCGAA	1 cut(s)	1142
BstC8I	GCNNGC	5 cut(s)	435, 705, 816, 1209, 2655
BstDSI	CCRYGG	2 cut(s)	425, 938
BstENI	CCTNNNNNAGG	1 cut(s)	2475
BstF5I	GGATG	6 cut(s)	233, 553, 1765, 2159, 2172, 2733
BstFNI	CGCG	1 cut(s)	2274
BstH2I	RGCGCY	3 cut(s)	91, 1627, 2248
BstHHI	GCGC	7 cut(s)	90, 131, 1034, 1626, 1854, 2247, 2274
BstMAI	GTCTC	3 cut(s)	96, 155, 2342
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	3 cut(s)	85, 267, 2529
BstNSI	RCATGY	2 cut(s)	291, 382
BstSCI	CCNGG	5 cut(s)	83, 265, 1348, 2149, 2527
BstSFI	CTRYAG	2 cut(s)	971, 1794
BstSLI	GKGCMC	2 cut(s)	334, 1828
BstUI	CGCG	1 cut(s)	2274
BstV1I	GCAGC	7 cut(s)	20, 1949, 2005, 2332, 2335, 2602, 2662
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	8 cut(s)	262, 410, 885, 1282, 1507, 1645, 1969, 2518
BstXI	CCANNNNNNTGG	1 cut(s)	945
BstYI	RGATCY	8 cut(s)	262, 410, 885, 1282, 1507, 1645, 1969, 2518
BstZ17I	GTATAC	1 cut(s)	1310
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	9 cut(s)	83, 814, 901, 949, 1088, 1180, 2123, 2149, 2481
BsuTUI	ATCGAT	1 cut(s)	124
BtgI	CCRYGG	2 cut(s)	425, 938
BtsCI	GGATG	6 cut(s)	233, 553, 1765, 2159, 2172, 2733
BtsIMutI	CAGTG	1 cut(s)	2244
Cac8I	GCNNGC	5 cut(s)	435, 705, 816, 1209, 2655
CaiI	CAGNNNCTG	1 cut(s)	2540
CciI	TCATGA	1 cut(s)	2715
CfoI	GCGC	7 cut(s)	90, 131, 1034, 1626, 1854, 2247, 2274
Cfr10I	RCCGGY	2 cut(s)	533, 2247
Cfr13I	GGNCC	8 cut(s)	416, 1179, 1763, 1912, 2029, 2148, 2195, 2419
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	7 cut(s)	422, 752, 846, 943, 1268, 1515, 2256
CviQI	GTAC	7 cut(s)	422, 752, 846, 943, 1268, 1515, 2256
DinI	GGCGCC	1 cut(s)	89
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	2 cut(s)	1217, 1832
DriI	GACNNNNNGTC	1 cut(s)	1335
Eam1105I	GACNNNNNGTC	1 cut(s)	1335
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	425, 558
Eco147I	AGGCCT	3 cut(s)	83, 901, 1088
Eco24I	GRGCYC	2 cut(s)	117, 1350
Eco31I	GGTCTC	1 cut(s)	2342
Eco47I	GGWCC	6 cut(s)	416, 1763, 1912, 2029, 2195, 2419
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	392, 1679
Eco88I	CYCGRG	2 cut(s)	73, 903
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	2475
EcoO109I	RGGNCCY	4 cut(s)	1912, 2029, 2195, 2419
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	83, 265, 2527
EcoT14I	CCWWGG	2 cut(s)	425, 558
EcoT22I	ATGCAT	2 cut(s)	665, 2165
EcoT38I	GRGCYC	2 cut(s)	117, 1350
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
ErhI	CCWWGG	2 cut(s)	425, 558
FalI	AAGNNNNNCTT	6 cut(s)	594, 626, 1674, 1706, 1959, 1991
FaqI	GGGAC	1 cut(s)	1925
FauI	CCCGC	2 cut(s)	207, 2502
FauNDI	CATATG	1 cut(s)	493
FbaI	TGATCA	3 cut(s)	961, 1399, 2730
FblI	GTMKAC	1 cut(s)	1309
FokI	GGATG	6 cut(s)	240, 540, 1772, 2159, 2166, 2720
FriOI	GRGCYC	2 cut(s)	117, 1350
FspBI	CTAG	6 cut(s)	951, 1229, 1512, 2078, 2184, 2339
GlaI	GCGC	7 cut(s)	89, 130, 1033, 1625, 1853, 2246, 2273
GsaI	CCCAGC	2 cut(s)	1047, 2111
GsuI	CTGGAG	3 cut(s)	288, 1005, 2679
HaeII	RGCGCY	3 cut(s)	91, 1627, 2248
HaeIII	GGCC	9 cut(s)	83, 814, 901, 949, 1088, 1180, 2123, 2149, 2481
HapII	CCGG	6 cut(s)	65, 99, 534, 1350, 2151, 2248
HhaI	GCGC	7 cut(s)	90, 131, 1034, 1626, 1854, 2247, 2274
Hin1I	GRCGYC	2 cut(s)	88, 1057
Hin6I	GCGC	7 cut(s)	88, 129, 1032, 1624, 1852, 2245, 2272
HinP1I	GCGC	7 cut(s)	88, 129, 1032, 1624, 1852, 2245, 2272
HincII	GTYRAC	3 cut(s)	1234, 1950, 2610
HindII	GTYRAC	3 cut(s)	1234, 1950, 2610
HindIII	AAGCTT	2 cut(s)	177, 2046
HinfI	GANTC	7 cut(s)	200, 397, 989, 1139, 1816, 2099, 2537
HpaII	CCGG	6 cut(s)	65, 99, 534, 1350, 2151, 2248
Hpy166II	GTNNAC	6 cut(s)	607, 1234, 1310, 1890, 1950, 2610
Hpy188III	TCNNGA	8 cut(s)	651, 965, 984, 1217, 1403, 1584, 1943, 2716
Hpy8I	GTNNAC	6 cut(s)	607, 1234, 1310, 1890, 1950, 2610
HpyCH4III	ACNGT	5 cut(s)	738, 942, 1272, 1720, 2239
HpyCH4IV	ACGT	3 cut(s)	1057, 2213, 2258
HpySE526I	ACGT	3 cut(s)	1057, 2213, 2258
Hsp92I	GRCGYC	2 cut(s)	88, 1057
HspAI	GCGC	7 cut(s)	88, 129, 1032, 1624, 1852, 2245, 2272
KasI	GGCGCC	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	1912
Ksp22I	TGATCA	3 cut(s)	961, 1399, 2730
LmnI	GCTCC	5 cut(s)	67, 667, 1565, 2005, 2565
Lsp1109I	GCAGC	7 cut(s)	20, 1949, 2005, 2332, 2335, 2602, 2662
LweI	GCATC	9 cut(s)	116, 901, 1030, 2120, 2144, 2181, 2226, 2256, 2557
MaeI	CTAG	6 cut(s)	951, 1229, 1512, 2078, 2184, 2339
MaeII	ACGT	3 cut(s)	1057, 2213, 2258
MaeIII	GTNAC	7 cut(s)	283, 793, 930, 1541, 2100, 2363, 2381
MbiI	CCGCTC	1 cut(s)	2509
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	8 cut(s)	262, 410, 885, 1282, 1507, 1645, 1969, 2518
MhlI	GDGCHC	5 cut(s)	72, 117, 334, 1350, 1828
Mly113I	GGCGCC	1 cut(s)	88
MlyI	GAGTC	3 cut(s)	209, 391, 2108
MmeI	TCCRAC	3 cut(s)	240, 2268, 2486
Mph1103I	ATGCAT	2 cut(s)	665, 2165
MroXI	GAANNNNTTC	2 cut(s)	1224, 1381
MseI	TTAA	8 cut(s)	519, 528, 596, 686, 1128, 1803, 1866, 2261
MslI	CAYNNNNRTG	2 cut(s)	1449, 2720
MspI	CCGG	6 cut(s)	65, 99, 534, 1350, 2151, 2248
MspR9I	CCNGG	5 cut(s)	85, 267, 1350, 2151, 2529
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	3 cut(s)	85, 267, 2529
MvnI	CGCG	1 cut(s)	2274
NarI	GGCGCC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	1350, 2151
NcoI	CCATGG	1 cut(s)	425
NdeI	CATATG	1 cut(s)	493
NmeAIII	GCCGAG	2 cut(s)	136, 601
NmuCI	GTSAC	1 cut(s)	2100
NsiI	ATGCAT	2 cut(s)	665, 2165
NspI	RCATGY	2 cut(s)	291, 382
NspV	TTCGAA	1 cut(s)	1142
PaeR7I	CTCGAG	1 cut(s)	903
PagI	TCATGA	1 cut(s)	2715
PceI	AGGCCT	3 cut(s)	83, 901, 1088
PciI	ACATGT	2 cut(s)	287, 378
PdmI	GAANNNNTTC	2 cut(s)	1224, 1381
PfeI	GAWTC	4 cut(s)	989, 1139, 1816, 2537
Pfl23II	CGTACG	1 cut(s)	2255
PflMI	CCANNNNNTGG	2 cut(s)	559, 1772
PfoI	TCCNGGA	1 cut(s)	265
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	3 cut(s)	208, 391, 2107
PluTI	GGCGCC	1 cut(s)	91
PpsI	GAGTC	3 cut(s)	208, 391, 2107
PpuMI	RGGWCCY	4 cut(s)	1912, 2029, 2195, 2419
PscI	ACATGT	2 cut(s)	287, 378
PshBI	ATTAAT	2 cut(s)	519, 596
PsiI	TTATAA	2 cut(s)	1986, 2475
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	4 cut(s)	1912, 2029, 2195, 2419
Psp6I	CCWGG	3 cut(s)	83, 265, 2527
PspFI	CCCAGC	2 cut(s)	1043, 2107
PspGI	CCWGG	3 cut(s)	83, 265, 2527
PspLI	CGTACG	1 cut(s)	2255
PspPI	GGNCC	8 cut(s)	416, 1179, 1763, 1912, 2029, 2148, 2195, 2419
PspPPI	RGGWCCY	4 cut(s)	1912, 2029, 2195, 2419
PspXI	VCTCGAGB	1 cut(s)	903
PstNI	CAGNNNCTG	1 cut(s)	2540
PsuI	RGATCY	8 cut(s)	262, 410, 885, 1282, 1507, 1645, 1969, 2518
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	7 cut(s)	423, 753, 847, 944, 1269, 1516, 2257
RsaNI	GTAC	7 cut(s)	422, 752, 846, 943, 1268, 1515, 2256
RseI	CAYNNNNRTG	2 cut(s)	1449, 2720
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	8 cut(s)	519, 528, 596, 686, 1128, 1803, 1866, 2261
Sau96I	GGNCC	8 cut(s)	416, 1179, 1763, 1912, 2029, 2148, 2195, 2419
SchI	GAGTC	3 cut(s)	209, 391, 2108
ScrFI	CCNGG	5 cut(s)	85, 267, 1350, 2151, 2529
SduI	GDGCHC	5 cut(s)	72, 117, 334, 1350, 1828
SfaNI	GCATC	9 cut(s)	116, 901, 1030, 2120, 2144, 2181, 2226, 2256, 2557
SfcI	CTRYAG	2 cut(s)	971, 1794
SfoI	GGCGCC	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	903
SfuI	TTCGAA	1 cut(s)	1142
SinI	GGWCC	6 cut(s)	416, 1763, 1912, 2029, 2195, 2419
SlaI	CTCGAG	1 cut(s)	903
SmiMI	CAYNNNNRTG	2 cut(s)	1449, 2720
SmlI	CTYRAG	5 cut(s)	243, 903, 1680, 1941, 2423
SmoI	CTYRAG	5 cut(s)	243, 903, 1680, 1941, 2423
SseBI	AGGCCT	3 cut(s)	83, 901, 1088
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	6 cut(s)	951, 1229, 1512, 2078, 2184, 2339
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	3 cut(s)	83, 901, 1088
StyD4I	CCNGG	5 cut(s)	83, 265, 1348, 2149, 2527
StyI	CCWWGG	2 cut(s)	425, 558
TaaI	ACNGT	5 cut(s)	738, 942, 1272, 1720, 2239
TaiI	ACGT	3 cut(s)	1060, 2216, 2261
TaqI	TCGA	5 cut(s)	124, 904, 1142, 1339, 1585
TatI	WGTACW	1 cut(s)	1514
TauI	GCSGC	4 cut(s)	10, 54, 814, 2272
TfiI	GAWTC	4 cut(s)	989, 1139, 1816, 2537
Tru1I	TTAA	8 cut(s)	519, 528, 596, 686, 1128, 1803, 1866, 2261
Tru9I	TTAA	8 cut(s)	519, 528, 596, 686, 1128, 1803, 1866, 2261
TscAI	CASTG	1 cut(s)	2244
TseFI	GTSAC	1 cut(s)	2100
TseI	GCWGC	7 cut(s)	33, 1937, 2018, 2320, 2323, 2590, 2650
Tsp45I	GTSAC	1 cut(s)	2100
TspDTI	ATGAA	7 cut(s)	156, 158, 209, 338, 456, 614, 669
TspGWI	ACGGA	3 cut(s)	918, 1295, 2243
TspRI	CASTG	1 cut(s)	2244
Van91I	CCANNNNNTGG	2 cut(s)	559, 1772
VpaK11BI	GGWCC	6 cut(s)	416, 1763, 1912, 2029, 2195, 2419
VspI	ATTAAT	2 cut(s)	519, 596
XagI	CCTNNNNNAGG	1 cut(s)	2475
XapI	RAATTY	3 cut(s)	646, 805, 994
XceI	RCATGY	2 cut(s)	291, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2183
XhoI	CTCGAG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	1309
XmnI	GAANNNNTTC	2 cut(s)	1224, 1381
XspI	CTAG	6 cut(s)	951, 1229, 1512, 2078, 2184, 2339
ZraI	GACGTC	1 cut(s)	1058
Zsp2I	ATGCAT	2 cut(s)	665, 2165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.