FvH4_3g04830

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007472
Physical Location & Seq
Forward (+)
2786818 .. 2795752
8935 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04830.t4

Sequence Viewer

Length: 2754 bp
ATGTTAAAGCTGGTTTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTGGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCTCAATCCAGTGAGAGATGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCCAAGTCTTCTTCTTCTTCTTCTCAGGACACATCGCGGCTCTTTCTTTTGCACTCCTCATGTATCATGGAGAACAAGACTGCAGTTATGAACCTAGGGGTGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGAAATAATCAAAAACAGCATCCATGTTTTTGGGGATTCAGTGTATCCTCCGGATTATACAGTTCTTGCCTTGGCATGCTGAACCTAAGATGTCTTGGCATTGTATTTGATCTTGATGAAACACTTATTGTTGCAAATACAATGCGATCATTCGAGGATCGAATTGAGGGCCTACAGAGGAAAATACAATGCGAGGTGGACGCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATACCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAGTTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGGTTGTTCCAGCCTTGTCTGACAGCCATCAACCTATCATCCGGCCACTTATACGTTTACAGGAGAAAAATATTATCTTGACTCGCATTAATCCACAGATTCGCGATACAAGCGTTCTTGTGAGGTTGAGACCTGCATGGGAGGATCTCAGGAGCTACTTGACTGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTTTGCACAATGGCTGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTTGATCCAGAATCAAATTTGATAAACGCAAATAAATTACTGGACCGCATCGTATGTGTCAAGTCTGGTTTAAAGAAGTCGTTGTTCAATGTCTTCCAAGAAAGCTTGTGCCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAGGTGTGGGATGACAGAGATCAACCTCGAGTGCATGTTGTTCCTGCATTTGCGCCTTATTACGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTGTGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGACAGTCTACTGCAAAAGATTCCTGAAATTTTTTACGAAGATAATATTAAAGATTTCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATGCTTCTGCTTCAAATGGAAATAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAGAGACGGCTAAAGGAAGCAACCTCAGCTGCTCCAACAGTCTCATCAGCAGTCAGTAACAACGACCCTAGGCTTGCTTCTCTTCAGTACACAGTGCCTCTTTCCAGCACAGTTTCACTACCAACAAATCAACCGTCAATGATGCCTTTTCATAATGTGCAGTTCCCTCAGTCAGCTTCTCTAGTTAAACCTTTGGGTCATGTTGGACCTGCAGATTTAGGCTTGCATAGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCTGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGATACAAGAGAGTCTGTACCTAGCGAACCTTCATTTCCTGTAAGACCCCAAGTACAAGTCTCTGTTCCACGGGTGCAATCACGTGGAGGCTGGTTTCCAGTGGAAGAAGAGATGAGCCCACGAAAACTAAGCCGGATGGTACCCAAAGAACCTCCTTTAAATTCAGAACCCATGCAGATCGAGAAGCATCGATCTCATCATTCAGCTTTTTTCCCAAAAGTTGAGAATTCTATGCCATCTGATAGAATTCTTCAAGAAAATCAGAGATTGCCGAAAGAGGCATTTCATAGAGATAATCGGTTGAGATTCAACCAAGCAATGTCTGGTTACCATTCATTCTCAGGTGAGGAACCTCCCTTAAATCGATCATCTTCCAGCAACAGAGATTTTGACTATGAATCTGGACGAGCTATATCAAATGCGGAAACTCCTGCTGGTGTTTTACAGGAAATTGCAATGAAGTGTGGAACAAAGGTGGAGTTCAGACCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCATGGTTCGCAGGAGAAAAAATTGGTGAAGGAACTGGTAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAGAATTTAGCTAATATATACATTTCCCGTGGCAAGCCTGATGCTCTGCCCATTCATGGGGATGCGAGCAAGTTTTCTAATGTTACGAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTGCCGAAAGAGGACTCTCTCTCGTCTTCAACTTCATCAGAGCCATCTAGGCCTCTAGACCCTAGGCTGGATAACTCTAGAAAGTCCGTGAGTTCAGTGTCTGCACTCAAGGAACTGTGTACAATGGAGGGTCTTAGTGTACTTTATCAACCACGGCCCCCACCACCTAATTCAACGGAGAAAGATGAAGTGCATGTACAGGCTGAAATTGATGGAGAGGTCTTGGGGAAGGGGATTGGCTTAACTTGGGATGAGGCTAAGATGCAGGCTGCTGAGAAGGCTCTCGGAAATCTAAGATCAACACTATATGGGTGTGAGACCTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

918

Amino Acids

102.87

Weight (kDa)

5.81

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 248 - 355 2.2e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
Acc36I ACCTGC 2 cut(s) 793, 1579
Acc65I GGTACC 1 cut(s) 1819
AccB1I GGYRCC 2 cut(s) 1618, 1819
AccI GTMKAC 2 cut(s) 51, 1207
AccII CGCG 2 cut(s) 232, 756
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 5 cut(s) 232, 940, 1651, 2102, 2279
AclWI GGATC 4 cut(s) 492, 804, 893, 1631
AcoI YGGCCR 2 cut(s) 695, 1675
AcsI RAATTY 8 cut(s) 910, 1193, 1227, 1840, 1906, 1926, 2296, 2404
AcuI CTGAAG 4 cut(s) 611, 1137, 1377, 1430
AcvI CACGTG 1 cut(s) 1763
AfaI GTAC 7 cut(s) 1451, 1698, 1734, 1821, 2545, 2565, 2622
AfiI CCNNNNNNNGG 6 cut(s) 295, 1340, 2278, 2348, 2349, 2491
AjnI CCWGG 2 cut(s) 1677, 2271
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
Alw26I GTCTC 5 cut(s) 775, 1360, 1408, 1744, 2735
AlwI GGATC 4 cut(s) 492, 804, 893, 1631
AlwNI CAGNNNCTG 2 cut(s) 1355, 2525
Ama87I CYCGRG 1 cut(s) 1068
Aor13HI TCCGGA 1 cut(s) 377
AoxI GGCC 5 cut(s) 496, 695, 1675, 2474, 2579
ApeKI GCWGC 6 cut(s) 304, 1167, 1391, 1669, 2276, 2693
ApoI RAATTY 8 cut(s) 910, 1193, 1227, 1840, 1906, 1926, 2296, 2404
ArsI GACNNNNNNTTYG 2 cut(s) 1481, 1513
AseI ATTAAT 1 cut(s) 741
Asp718I GGTACC 1 cut(s) 1819
AspA2I CCTAGG 3 cut(s) 289, 1430, 2486
AspLEI GCGC 2 cut(s) 828, 1096
AspS9I GGNCC 4 cut(s) 496, 937, 1568, 2580
AsuHPI GGTGA 4 cut(s) 646, 1036, 2036, 2246
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 2 cut(s) 937, 1568
AvrII CCTAGG 3 cut(s) 289, 1430, 2486
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BalI TGGCCA 1 cut(s) 1677
BanI GGYRCC 2 cut(s) 1618, 1819
BanII GRGCYC 1 cut(s) 1799
BarI GAAGNNNNNNTAC 2 cut(s) 2604, 2636
BbrPI CACGTG 1 cut(s) 1763
BbsI GAAGAC 3 cut(s) 195, 979, 2442
BbvCI CCTCAGC 1 cut(s) 1387
BbvI GCAGC 6 cut(s) 291, 1179, 1378, 1681, 2263, 2680
BccI CCATC 8 cut(s) 687, 1009, 1014, 1334, 1810, 1924, 2476, 2630
BceAI ACGGC 2 cut(s) 1385, 2594
BciT130I CCWGG 2 cut(s) 1679, 2273
BciVI GTATCC 2 cut(s) 382, 1675
BclI TGATCA 2 cut(s) 610, 636
BcoDI GTCTC 5 cut(s) 775, 1360, 1408, 1744, 2735
BfmI CTRYAG 5 cut(s) 276, 500, 1165, 1572, 2192
BfuAI ACCTGC 2 cut(s) 793, 1579
BfuI GTATCC 2 cut(s) 382, 1675
BglI GCCNNNNNGGC 1 cut(s) 2473
BisI GCNGC 7 cut(s) 233, 305, 1168, 1392, 1670, 2277, 2694
BlnI CCTAGG 3 cut(s) 289, 1430, 2486
BlsI GCNGC 7 cut(s) 234, 306, 1169, 1393, 1671, 2278, 2695
Bme1390I CCNGG 2 cut(s) 1679, 2273
Bme18I GGWCC 2 cut(s) 937, 1568
BmeT110I CYCGRG 1 cut(s) 1068
BmgT120I GGNCC 4 cut(s) 496, 937, 1568, 2580
BmiI GGNNCC 5 cut(s) 1620, 1821, 2031, 2178, 2582
BmrFI CCNGG 2 cut(s) 1679, 2273
BmsI GCATC 9 cut(s) 355, 951, 1288, 1342, 1494, 1876, 2323, 2344, 2676
BoxI GACNNNNGTC 1 cut(s) 1203
BpiI GAAGAC 3 cut(s) 195, 979, 2442
Bpu10I CCTNAGC 1 cut(s) 1387
BpuEI CTTGAG 2 cut(s) 1095, 2516
Bsa29I ATCGAT 2 cut(s) 1870, 2044
BsaAI YACGTR 1 cut(s) 1763
BsaI GGTCTC 2 cut(s) 775, 2735
BsaJI CCNNGG 8 cut(s) 289, 397, 1430, 1748, 2320, 2486, 2576, 2745
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 6 cut(s) 295, 1340, 2278, 2348, 2349, 2491
Bse1I ACTGG 4 cut(s) 126, 939, 1778, 2248
Bse3DI GCAATG 3 cut(s) 2004, 2142, 2423
BseAI TCCGGA 1 cut(s) 377
BseBI CCWGG 2 cut(s) 1679, 2273
BseCI ATCGAT 2 cut(s) 1870, 2044
BseDI CCNNGG 8 cut(s) 289, 397, 1430, 1748, 2320, 2486, 2576, 2745
BseGI GGATG 9 cut(s) 91, 346, 690, 1006, 1057, 1300, 1821, 2359, 2680
BseLI CCNNNNNNNGG 6 cut(s) 295, 1340, 2278, 2348, 2349, 2491
BseMI GCAATG 3 cut(s) 2004, 2142, 2423
BseMII CTCAG 9 cut(s) 233, 642, 659, 814, 1401, 1544, 2034, 2432, 2688
BseNI ACTGG 4 cut(s) 126, 939, 1778, 2248
BseRI GAGGAG 3 cut(s) 241, 314, 1098
BseXI GCAGC 6 cut(s) 291, 1179, 1378, 1681, 2263, 2680
BseYI CCCAGC 1 cut(s) 2180
BsgI GTGCAG 2 cut(s) 1541, 2511
Bsh1236I CGCG 2 cut(s) 232, 756
BshFI GGCC 5 cut(s) 498, 697, 1677, 2476, 2581
BshNI GGYRCC 2 cut(s) 1618, 1819
BshVI ATCGAT 2 cut(s) 1870, 2044
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 3 cut(s) 378, 694, 1813
BslFI GGGAC 2 cut(s) 1118, 2428
BslI CCNNNNNNNGG 6 cut(s) 295, 1340, 2278, 2348, 2349, 2491
BsmAI GTCTC 5 cut(s) 775, 1360, 1408, 1744, 2735
BsmBI CGTCTC 1 cut(s) 1360
BsmFI GGGAC 2 cut(s) 1118, 2428
BsnI GGCC 5 cut(s) 498, 697, 1677, 2476, 2581
Bso31I GGTCTC 2 cut(s) 775, 2735
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 1 cut(s) 1799
Bsp13I TCCGGA 1 cut(s) 377
Bsp1407I TGTACA 2 cut(s) 2543, 2620
Bsp68I TCGCGA 1 cut(s) 756
BspACI CCGC 5 cut(s) 232, 940, 1651, 2102, 2279
BspANI GGCC 5 cut(s) 498, 697, 1677, 2476, 2581
BspCNI CTCAG 9 cut(s) 232, 643, 658, 813, 1400, 1543, 2033, 2431, 2689
BspDI ATCGAT 2 cut(s) 1870, 2044
BspEI TCCGGA 1 cut(s) 377
BspFNI CGCG 2 cut(s) 232, 756
BspLI GGNNCC 5 cut(s) 1620, 1821, 2031, 2178, 2582
BspMAI CTGCAG 4 cut(s) 280, 1169, 1576, 2196
BspMI ACCTGC 2 cut(s) 793, 1579
BspPI GGATC 4 cut(s) 492, 804, 893, 1631
BspT107I GGYRCC 2 cut(s) 1618, 1819
BspTNI GGTCTC 2 cut(s) 775, 2735
BsrDI GCAATG 3 cut(s) 2004, 2142, 2423
BsrGI TGTACA 2 cut(s) 2543, 2620
BsrI ACTGG 4 cut(s) 126, 939, 1778, 2248
BssECI CCNNGG 8 cut(s) 289, 397, 1430, 1748, 2320, 2486, 2576, 2745
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 5 cut(s) 289, 397, 1430, 2486, 2745
Bst1107I GTATAC 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 1679, 2273
Bst4CI ACNGT 7 cut(s) 389, 1205, 1402, 1456, 1474, 1497, 2541
Bst6I CTCTTC 5 cut(s) 21, 54, 1264, 1449, 1782
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstAUI TGTACA 2 cut(s) 2543, 2620
BstBAI YACGTR 1 cut(s) 1763
BstC8I GCNNGC 9 cut(s) 404, 552, 830, 1165, 1437, 1586, 2327, 2359, 2691
BstDSI CCRYGG 3 cut(s) 1748, 2320, 2576
BstEII GGTNACC 1 cut(s) 2006
BstF5I GGATG 9 cut(s) 91, 346, 690, 1006, 1057, 1300, 1821, 2359, 2680
BstFNI CGCG 2 cut(s) 232, 756
BstHHI GCGC 2 cut(s) 828, 1096
BstMAI GTCTC 5 cut(s) 775, 1360, 1408, 1744, 2735
BstMWI GCNNNNNNNGC 7 cut(s) 762, 1112, 1127, 1388, 2216, 2473, 2702
BstNI CCWGG 2 cut(s) 1679, 2273
BstNSI RCATGY 3 cut(s) 406, 1079, 2621
BstPAI GACNNNNGTC 1 cut(s) 1203
BstPI GGTNACC 1 cut(s) 2006
BstSCI CCNGG 2 cut(s) 1677, 2271
BstSFI CTRYAG 5 cut(s) 276, 500, 1165, 1572, 2192
BstUI CGCG 2 cut(s) 232, 756
BstV1I GCAGC 6 cut(s) 291, 1179, 1378, 1681, 2263, 2680
BstV2I GAAGAC 3 cut(s) 195, 979, 2442
BstX2I RGATCY 2 cut(s) 796, 1636
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 2 cut(s) 796, 1636
BstZ17I GTATAC 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 1870, 2044
BsuI GTATCC 2 cut(s) 382, 1675
BsuRI GGCC 5 cut(s) 498, 697, 1677, 2476, 2581
BsuTUI ATCGAT 2 cut(s) 1870, 2044
BtgI CCRYGG 3 cut(s) 1748, 2320, 2576
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 9 cut(s) 91, 346, 690, 1006, 1057, 1300, 1821, 2359, 2680
BtsIMutI CAGTG 5 cut(s) 133, 373, 1461, 1785, 2526
BtuMI TCGCGA 1 cut(s) 756
BveI ACCTGC 2 cut(s) 793, 1579
Cac8I GCNNGC 9 cut(s) 404, 552, 830, 1165, 1437, 1586, 2327, 2359, 2691
CaiI CAGNNNCTG 2 cut(s) 1355, 2525
CfoI GCGC 2 cut(s) 828, 1096
Cfr13I GGNCC 4 cut(s) 496, 937, 1568, 2580
ClaI ATCGAT 2 cut(s) 1870, 2044
CseI GACGC 2 cut(s) 536, 1159
Csp6I GTAC 7 cut(s) 1450, 1697, 1733, 1820, 2544, 2564, 2621
CviQI GTAC 7 cut(s) 1450, 1697, 1733, 1820, 2544, 2564, 2621
DraI TTTAAA 2 cut(s) 966, 1839
EaeI YGGCCR 2 cut(s) 695, 1675
Eam1104I CTCTTC 5 cut(s) 21, 54, 1264, 1449, 1782
EarI CTCTTC 5 cut(s) 21, 54, 1264, 1449, 1782
EciI GGCGGA 1 cut(s) 1666
Eco130I CCWWGG 5 cut(s) 289, 397, 1430, 2486, 2745
Eco147I AGGCCT 1 cut(s) 2476
Eco24I GRGCYC 1 cut(s) 1799
Eco31I GGTCTC 2 cut(s) 775, 2735
Eco47I GGWCC 2 cut(s) 937, 1568
Eco57I CTGAAG 4 cut(s) 611, 1137, 1377, 1430
Eco72I CACGTG 1 cut(s) 1763
Eco88I CYCGRG 1 cut(s) 1068
Eco91I GGTNACC 1 cut(s) 2006
EcoO109I RGGNCCY 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 2006
EcoRI GAATTC 3 cut(s) 1906, 1926, 2404
EcoRII CCWGG 2 cut(s) 1677, 2271
EcoT14I CCWWGG 5 cut(s) 289, 397, 1430, 2486, 2745
EcoT38I GRGCYC 1 cut(s) 1799
ErhI CCWWGG 5 cut(s) 289, 397, 1430, 2486, 2745
Esp3I CGTCTC 1 cut(s) 1360
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 2 cut(s) 1118, 2428
FbaI TGATCA 2 cut(s) 610, 636
FblI GTMKAC 2 cut(s) 51, 1207
Fnu4HI GCNGC 7 cut(s) 233, 305, 1168, 1392, 1670, 2277, 2694
FokI GGATG 9 cut(s) 98, 333, 677, 993, 1064, 1307, 1828, 2366, 2687
FriOI GRGCYC 1 cut(s) 1799
Fsp4HI GCNGC 7 cut(s) 233, 305, 1168, 1392, 1670, 2277, 2694
GlaI GCGC 2 cut(s) 827, 1095
GluI GCNGC 7 cut(s) 233, 305, 1168, 1392, 1670, 2277, 2694
GsaI CCCAGC 1 cut(s) 2184
HaeIII GGCC 5 cut(s) 498, 697, 1677, 2476, 2581
HapII CCGG 3 cut(s) 378, 694, 1813
HgaI GACGC 2 cut(s) 536, 1159
HhaI GCGC 2 cut(s) 828, 1096
Hin6I GCGC 2 cut(s) 826, 1094
HinP1I GCGC 2 cut(s) 826, 1094
HindIII AAGCTT 1 cut(s) 997
HpaII CCGG 3 cut(s) 378, 694, 1813
HphI GGTGA 4 cut(s) 646, 1036, 2036, 2246
Hpy166II GTNNAC 8 cut(s) 52, 140, 526, 710, 1208, 1452, 2544, 2564
Hpy8I GTNNAC 8 cut(s) 52, 140, 526, 710, 1208, 1452, 2544, 2564
HpyAV CCTTC 8 cut(s) 88, 1036, 1604, 1719, 2231, 2250, 2647, 2695
HpyCH4III ACNGT 7 cut(s) 389, 1205, 1402, 1456, 1474, 1497, 2541
HpyCH4IV ACGT 2 cut(s) 706, 1762
HpyF10VI GCNNNNNNNGC 7 cut(s) 762, 1112, 1127, 1388, 2216, 2473, 2702
HpySE526I ACGT 2 cut(s) 706, 1762
HspAI GCGC 2 cut(s) 826, 1094
Kpn2I TCCGGA 1 cut(s) 377
KpnI GGTACC 1 cut(s) 1823
Ksp22I TGATCA 2 cut(s) 610, 636
LmnI GCTCC 4 cut(s) 301, 804, 1111, 1399
Lsp1109I GCAGC 6 cut(s) 291, 1179, 1378, 1681, 2263, 2680
LweI GCATC 9 cut(s) 355, 951, 1288, 1342, 1494, 1876, 2323, 2344, 2676
MaeII ACGT 2 cut(s) 706, 1762
MaeIII GTNAC 4 cut(s) 30, 1418, 2006, 2374
MflI RGATCY 2 cut(s) 796, 1636
MhlI GDGCHC 1 cut(s) 1799
MlsI TGGCCA 1 cut(s) 1677
MluNI TGGCCA 1 cut(s) 1677
MlyI GAGTC 5 cut(s) 203, 727, 1700, 2410, 2432
MmeI TCCRAC 2 cut(s) 1421, 1546
Mox20I TGGCCA 1 cut(s) 1677
MroI TCCGGA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 1677
MseI TTAA 8 cut(s) 5, 741, 965, 1248, 1548, 1838, 2039, 2666
MslI CAYNNNNRTG 1 cut(s) 2352
Msp20I TGGCCA 1 cut(s) 1677
MspA1I CMGCKG 1 cut(s) 1391
MspI CCGG 3 cut(s) 378, 694, 1813
MspR9I CCNGG 2 cut(s) 1679, 2273
MvaI CCWGG 2 cut(s) 1679, 2273
MvnI CGCG 2 cut(s) 232, 756
MwoI GCNNNNNNNGC 7 cut(s) 762, 1112, 1127, 1388, 2216, 2473, 2702
NlaIV GGNNCC 5 cut(s) 1620, 1821, 2031, 2178, 2582
NruI TCGCGA 1 cut(s) 756
NspI RCATGY 3 cut(s) 406, 1079, 2621
PaeI GCATGC 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 1068
PceI AGGCCT 1 cut(s) 2476
PfeI GAWTC 7 cut(s) 363, 751, 905, 1219, 1625, 1986, 2078
PkrI GCNGC 7 cut(s) 234, 306, 1169, 1393, 1671, 2278, 2695
PleI GAGTC 5 cut(s) 202, 727, 1699, 2410, 2432
PmaCI CACGTG 1 cut(s) 1763
PmlI CACGTG 1 cut(s) 1763
PpsI GAGTC 5 cut(s) 202, 727, 1699, 2410, 2432
Ppu21I YACGTR 1 cut(s) 1763
PshAI GACNNNNGTC 1 cut(s) 1203
PshBI ATTAAT 1 cut(s) 741
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 1677, 2271
PspCI CACGTG 1 cut(s) 1763
PspEI GGTNACC 1 cut(s) 2006
PspFI CCCAGC 1 cut(s) 2180
PspGI CCWGG 2 cut(s) 1677, 2271
PspN4I GGNNCC 5 cut(s) 1620, 1821, 2031, 2178, 2582
PspPI GGNCC 4 cut(s) 496, 937, 1568, 2580
PspXI VCTCGAGB 1 cut(s) 1068
PstI CTGCAG 4 cut(s) 280, 1169, 1576, 2196
PstNI CAGNNNCTG 2 cut(s) 1355, 2525
PsuI RGATCY 2 cut(s) 796, 1636
PvuII CAGCTG 1 cut(s) 1391
RruI TCGCGA 1 cut(s) 756
RsaI GTAC 7 cut(s) 1451, 1698, 1734, 1821, 2545, 2565, 2622
RsaNI GTAC 7 cut(s) 1450, 1697, 1733, 1820, 2544, 2564, 2621
RseI CAYNNNNRTG 1 cut(s) 2352
SaqAI TTAA 8 cut(s) 5, 741, 965, 1248, 1548, 1838, 2039, 2666
SatI GCNGC 7 cut(s) 233, 305, 1168, 1392, 1670, 2277, 2694
Sau96I GGNCC 4 cut(s) 496, 937, 1568, 2580
SchI GAGTC 5 cut(s) 203, 727, 1700, 2410, 2432
ScrFI CCNGG 2 cut(s) 1679, 2273
SduI GDGCHC 1 cut(s) 1799
SfaNI GCATC 9 cut(s) 355, 951, 1288, 1342, 1494, 1876, 2323, 2344, 2676
SfcI CTRYAG 5 cut(s) 276, 500, 1165, 1572, 2192
Sfr274I CTCGAG 1 cut(s) 1068
SinI GGWCC 2 cut(s) 937, 1568
SlaI CTCGAG 1 cut(s) 1068
SmiMI CAYNNNNRTG 1 cut(s) 2352
SmlI CTYRAG 3 cut(s) 1068, 1110, 2531
SmoI CTYRAG 3 cut(s) 1068, 1110, 2531
SphI GCATGC 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 2476
SsiI CCGC 5 cut(s) 232, 940, 1651, 2102, 2279
SspI AATATT 2 cut(s) 724, 1246
StuI AGGCCT 1 cut(s) 2476
StyD4I CCNGG 2 cut(s) 1677, 2271
StyI CCWWGG 5 cut(s) 289, 397, 1430, 2486, 2745
TaaI ACNGT 7 cut(s) 389, 1205, 1402, 1456, 1474, 1497, 2541
TaiI ACGT 2 cut(s) 709, 1765
TaqI TCGA 7 cut(s) 326, 480, 487, 1069, 1860, 1870, 2044
TatI WGTACW 5 cut(s) 1449, 1732, 2543, 2563, 2620
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 7 cut(s) 363, 751, 905, 1219, 1625, 1986, 2078
Tru1I TTAA 8 cut(s) 5, 741, 965, 1248, 1548, 1838, 2039, 2666
Tru9I TTAA 8 cut(s) 5, 741, 965, 1248, 1548, 1838, 2039, 2666
TscAI CASTG 5 cut(s) 133, 373, 1461, 1785, 2526
TseI GCWGC 6 cut(s) 304, 1167, 1391, 1669, 2276, 2693
TspGWI ACGGA 3 cut(s) 2201, 2500, 2615
TspRI CASTG 5 cut(s) 133, 373, 1461, 1785, 2526
VpaK11BI GGWCC 2 cut(s) 937, 1568
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 8 cut(s) 910, 1193, 1227, 1840, 1906, 1926, 2296, 2404
XbaI TCTAGA 2 cut(s) 2479, 2501
XceI RCATGY 3 cut(s) 406, 1079, 2621
XcmI CCANNNNNNNNNTGG 1 cut(s) 2000
XhoI CTCGAG 1 cut(s) 1068
XmaJI CCTAGG 3 cut(s) 289, 1430, 2486
XmiI GTMKAC 2 cut(s) 51, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.