Rw5G006020

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007472
Physical Location & Seq
Reverse (-)
6204929 .. 6213351
8423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006020.1

Sequence Viewer

Length: 2862 bp
ATGCTTAAGCTTGTGTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCGAAGTCTTCTTCTGTTCAGGACACAACGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGACTGCAGTTATGGCCCTAGGAGGGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGGAATAATGAAAAACAGCATCCATGTTTTTGGGGATTCAACGTATCGTCTGGACTATACAGTTCTTGCCTCGGCATGCTGAACCTAAGATGTCTTGGCATTGTATTTGATCTTGATGAAACGCTTATTGTTGCAAATACAATGCGTTCATTCGAGGATCGAATTGAGGGCCTACAGAGGAAAATAAACTGCGAGGTGGACCCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATATCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAATTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGATTGTTCCAGCCTTGTCTGACAACCATCAACCTATCATCCGGCCACTTATACGATTACAGGAGAAAAATATTATCCTGACTCGCATTAATCCGCAGATTCGCGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTAGGAGCTACTTGACGGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTCTGCACAATGGCCGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTCGATCCAGAATCAAATTTGATAAACGCAAATAAATTACTGGACCGCATCGTTTGTGTCAAGTCTGGTTTAAGGAAGTCGCTGTTCAATGTCTTCCAAGAAAGTTTATGCCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCATGTTGTTCCCGCATTTGCACCTTACTATGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTATGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGACAGTTTACTACAAAAGATTCCTGAAATTTTTTACGAAGATAATATTAAAGATATCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATACTTCTGCTTCAAATGGGAACAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAAAGAAGACTGAAGGAAGCAACCTCAGCTGCTCCAACAGTCTCTTCAGCAGTCAATAACATTGATCCGAGGCTTGCTTCTCTTCAGTACACAGTGCCTCCTTCCAGCACAGTTTCACTACCAACAGTTCAACCATCAATGATGCCTTTTCATAATGTGCAGTTCCCTCAGTCAGCTTCACTAGTTAAACCTTTGGGTCATGTTGGCCCTGCAGATTTAGGTTTGCATAGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCAGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGATACAAGAGAGTCTGTACCAAGCGAACCTCCATTTCCTGTAAGACCCCAAGTACAAGTCTCTGTCCCACGGGTGCAATCACGTGCAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGAAAACTGAGCCGGATGGGACCCAAAGAACTTCCTTTAAATTCAGAACCCATGCAGATTGAGAAGCATCGACCTCATCATTCAGCTTTTTTCCCTAAAGTTGAGAGTTCTATGCCATCTGATAGAATTCTTCAAGAAAATCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTCAACCAAGCAATGTCTGGTTACCATTCATTCTCAGGTGAGGAGCCTCCCTTAAATCGATCATCTTCCAGCAACAGGGATTTTGACTTTGAATCTGGGCGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAGTGTGGAACCAAGGTGGAGTTCAGGCCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCTTGGTTCGCGGGAGAGAAAATTGGTGAAGGAACTGGTAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAAAAGTTAGCCAATATATACATTTCCCGTGGCAAGCCTGATTCTCTGCCCATTCAAGGGGATGCAAACAAGTTTTCTAATGTTAATAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTTCCAAAAGAGGACTCTCTTTCTTCTTCAACTTCATCAGAGCCATCTAGGCCTCTAGACCCTAGGCTGGAAAGTTCTAAGAAGTCTGTGAGTTCAGTGTCTGCACTCAAGGAACTGTGTACAATGGAGGGTCTTGGTGTAGTTTTTCAACCACGGCCTCCACCACCTAATTCAATGGAGAAGGATGAAGTGCATGTACAGGTTGAAATAGATGGAGAGGTCTTGGGGAAGGGAATTGGCTTAACTTGGGATGAGGCTAAGATGGAGGCTGCTGAAAAGGCCCTTGGAAGTCTAAGATCAACACTATATGGTCAGAAACGTCAAGGTTCTCCAAGGCCTTTACAAGGGATGCCAAGCAAACGCCTGAAGCAGGAATTTCCACAAGTTCTGCAGCGGATGCCCTCTTCTGCTAGATATCCGAAAAACGCTCCTCCTGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

953

Amino Acids

106.93

Weight (kDa)

6.18

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 246 - 353 2.1e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 1612
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 51
AccII CGCG 2 cut(s) 750, 2213
AciI CCGC 8 cut(s) 227, 740, 934, 1080, 1645, 2213, 2273, 2812
AclWI GGATC 5 cut(s) 486, 798, 887, 1415, 1625
AcoI YGGCCR 3 cut(s) 689, 852, 1669
AcsI RAATTY 7 cut(s) 904, 1187, 1221, 1834, 1920, 2398, 2792
AcuI CTGAAG 7 cut(s) 605, 1131, 1371, 1386, 1388, 1424, 2804
AcvI CACGTG 1 cut(s) 1757
AfaI GTAC 5 cut(s) 1445, 1692, 1728, 2539, 2616
AflII CTTAAG 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 1537
AjnI CCWGG 2 cut(s) 1671, 2265
AjuI GAANNNNNNNTTGG 8 cut(s) 18, 50, 1384, 1416, 2138, 2170, 2685, 2717
Alw26I GTCTC 3 cut(s) 769, 1402, 1738
AlwI GGATC 5 cut(s) 486, 798, 887, 1415, 1625
AlwNI CAGNNNCTG 2 cut(s) 1349, 2519
Ama87I CYCGRG 1 cut(s) 1062
ApeKI GCWGC 7 cut(s) 298, 1161, 1385, 1663, 2270, 2687, 2809
ApoI RAATTY 7 cut(s) 904, 1187, 1221, 1834, 1920, 2398, 2792
AseI ATTAAT 1 cut(s) 735
AspA2I CCTAGG 2 cut(s) 283, 2480
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 7 cut(s) 280, 490, 520, 931, 1562, 1814, 2698
AsuHPI GGTGA 4 cut(s) 640, 1030, 2030, 2240
AvaI CYCGRG 1 cut(s) 1062
AvaII GGWCC 3 cut(s) 520, 931, 1814
AvrII CCTAGG 2 cut(s) 283, 2480
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 1 cut(s) 1671
BanI GGYRCC 1 cut(s) 1612
BanII GRGCYC 1 cut(s) 1793
BarI GAAGNNNNNNTAC 2 cut(s) 2598, 2630
BauI CACGAG 1 cut(s) 764
BbrPI CACGTG 1 cut(s) 1757
BbsI GAAGAC 3 cut(s) 195, 973, 1369
BbvCI CCTCAGC 1 cut(s) 1381
BbvI GCAGC 7 cut(s) 285, 1173, 1372, 1675, 2257, 2674, 2821
BceAI ACGGC 2 cut(s) 825, 2588
BciT130I CCWGG 2 cut(s) 1673, 2267
BciVI GTATCC 1 cut(s) 1669
BclI TGATCA 2 cut(s) 604, 630
BcoDI GTCTC 3 cut(s) 769, 1402, 1738
BcuI ACTAGT 1 cut(s) 1537
BfaI CTAG 8 cut(s) 284, 1277, 1538, 1596, 2466, 2474, 2481, 2829
BfmI CTRYAG 6 cut(s) 270, 494, 1159, 1566, 2186, 2807
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 787
BfuI GTATCC 1 cut(s) 1669
BglI GCCNNNNNGGC 1 cut(s) 2467
BisI GCNGC 8 cut(s) 227, 299, 1162, 1386, 1664, 2271, 2688, 2810
BlnI CCTAGG 2 cut(s) 283, 2480
BlsI GCNGC 8 cut(s) 228, 300, 1163, 1387, 1665, 2272, 2689, 2811
Bme1390I CCNGG 2 cut(s) 1673, 2267
Bme18I GGWCC 3 cut(s) 520, 931, 1814
BmeT110I CYCGRG 1 cut(s) 1062
BmgT120I GGNCC 7 cut(s) 280, 490, 520, 931, 1562, 1814, 2698
BmiI GGNNCC 7 cut(s) 522, 1614, 1815, 1816, 2025, 2143, 2172
BmrFI CCNGG 2 cut(s) 1673, 2267
BmsI GCATC 8 cut(s) 349, 945, 1336, 1488, 1870, 2338, 2757, 2805
BpiI GAAGAC 3 cut(s) 195, 973, 1369
BpmI CTGGAG 1 cut(s) 2130
Bpu10I CCTNAGC 1 cut(s) 1381
BpuEI CTTGAG 2 cut(s) 1089, 2510
Bsa29I ATCGAT 1 cut(s) 2038
BsaAI YACGTR 1 cut(s) 1757
BsaI GGTCTC 1 cut(s) 769
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1438, 1468
Bse1I ACTGG 4 cut(s) 126, 933, 1772, 2242
Bse3DI GCAATG 2 cut(s) 1998, 2136
BseBI CCWGG 2 cut(s) 1673, 2267
BseCI ATCGAT 1 cut(s) 2038
BseMI GCAATG 2 cut(s) 1998, 2136
BseMII CTCAG 7 cut(s) 636, 653, 1395, 1538, 1793, 2028, 2426
BseNI ACTGG 4 cut(s) 126, 933, 1772, 2242
BseRI GAGGAG 4 cut(s) 308, 1092, 2036, 2838
BseXI GCAGC 7 cut(s) 285, 1173, 1372, 1675, 2257, 2674, 2821
BseYI CCCAGC 1 cut(s) 2174
BsgI GTGCAG 4 cut(s) 829, 1535, 1779, 2505
Bsh1236I CGCG 2 cut(s) 750, 2213
BshNI GGYRCC 1 cut(s) 1612
BshVI ATCGAT 1 cut(s) 2038
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 2 cut(s) 688, 1807
BslFI GGGAC 4 cut(s) 1112, 1724, 1827, 2422
BsmAI GTCTC 3 cut(s) 769, 1402, 1738
BsmFI GGGAC 4 cut(s) 1112, 1724, 1827, 2422
Bso31I GGTCTC 1 cut(s) 769
BsoBI CYCGRG 1 cut(s) 1062
Bsp1286I GDGCHC 1 cut(s) 1793
Bsp1407I TGTACA 2 cut(s) 2537, 2614
Bsp68I TCGCGA 1 cut(s) 750
BspACI CCGC 8 cut(s) 227, 740, 934, 1080, 1645, 2213, 2273, 2812
BspCNI CTCAG 7 cut(s) 637, 652, 1394, 1537, 1794, 2027, 2425
BspDI ATCGAT 1 cut(s) 2038
BspFNI CGCG 2 cut(s) 750, 2213
BspLI GGNNCC 7 cut(s) 522, 1614, 1815, 1816, 2025, 2143, 2172
BspMAI CTGCAG 5 cut(s) 274, 1163, 1570, 2190, 2811
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 5 cut(s) 486, 798, 887, 1415, 1625
BspT107I GGYRCC 1 cut(s) 1612
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 769
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 1998, 2136
BsrGI TGTACA 2 cut(s) 2537, 2614
BsrI ACTGG 4 cut(s) 126, 933, 1772, 2242
BssNAI GTATAC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 5 cut(s) 283, 2145, 2480, 2701, 2750
Bst1107I GTATAC 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 2 cut(s) 1673, 2267
Bst4CI ACNGT 7 cut(s) 383, 1199, 1396, 1450, 1468, 1483, 2535
Bst6I CTCTTC 8 cut(s) 21, 54, 250, 1258, 1405, 1443, 1776, 2827
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1121, 2815
BstAUI TGTACA 2 cut(s) 2537, 2614
BstBAI YACGTR 1 cut(s) 1757
BstC8I GCNNGC 9 cut(s) 398, 546, 824, 1159, 1431, 1762, 2082, 2163, 2321
BstDSI CCRYGG 3 cut(s) 1742, 2314, 2570
BstEII GGTNACC 1 cut(s) 2000
BstENI CCTNNNNNAGG 2 cut(s) 2760, 2786
BstFNI CGCG 2 cut(s) 750, 2213
BstHHI GCGC 1 cut(s) 822
BstMAI GTCTC 3 cut(s) 769, 1402, 1738
BstMWI GCNNNNNNNGC 8 cut(s) 278, 1106, 1121, 1382, 2210, 2467, 2696, 2815
BstNI CCWGG 2 cut(s) 1673, 2267
BstNSI RCATGY 3 cut(s) 400, 1073, 2615
BstPI GGTNACC 1 cut(s) 2000
BstSCI CCNGG 2 cut(s) 1671, 2265
BstSFI CTRYAG 6 cut(s) 270, 494, 1159, 1566, 2186, 2807
BstUI CGCG 2 cut(s) 750, 2213
BstV1I GCAGC 7 cut(s) 285, 1173, 1372, 1675, 2257, 2674, 2821
BstV2I GAAGAC 3 cut(s) 195, 973, 1369
BstX2I RGATCY 2 cut(s) 790, 1630
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 2 cut(s) 790, 1630
BstZ17I GTATAC 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 2038
BsuI GTATCC 1 cut(s) 1669
BsuTUI ATCGAT 1 cut(s) 2038
BtgI CCRYGG 3 cut(s) 1742, 2314, 2570
BtsIMutI CAGTG 4 cut(s) 133, 1455, 1779, 2520
BtuMI TCGCGA 1 cut(s) 750
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 9 cut(s) 398, 546, 824, 1159, 1431, 1762, 2082, 2163, 2321
CaiI CAGNNNCTG 2 cut(s) 1349, 2519
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 7 cut(s) 280, 490, 520, 931, 1562, 1814, 2698
ClaI ATCGAT 1 cut(s) 2038
CseI GACGC 1 cut(s) 1153
Csp6I GTAC 5 cut(s) 1444, 1691, 1727, 2538, 2615
CviQI GTAC 5 cut(s) 1444, 1691, 1727, 2538, 2615
DraI TTTAAA 1 cut(s) 1833
EaeI YGGCCR 3 cut(s) 689, 852, 1669
Eam1104I CTCTTC 8 cut(s) 21, 54, 250, 1258, 1405, 1443, 1776, 2827
EarI CTCTTC 8 cut(s) 21, 54, 250, 1258, 1405, 1443, 1776, 2827
EciI GGCGGA 1 cut(s) 1660
Eco130I CCWWGG 5 cut(s) 283, 2145, 2480, 2701, 2750
Eco147I AGGCCT 2 cut(s) 2470, 2755
Eco24I GRGCYC 1 cut(s) 1793
Eco31I GGTCTC 1 cut(s) 769
Eco32I GATATC 3 cut(s) 563, 1249, 2834
Eco47I GGWCC 3 cut(s) 520, 931, 1814
Eco57I CTGAAG 7 cut(s) 605, 1131, 1371, 1386, 1388, 1424, 2804
Eco72I CACGTG 1 cut(s) 1757
Eco88I CYCGRG 1 cut(s) 1062
Eco91I GGTNACC 1 cut(s) 2000
EcoNI CCTNNNNNAGG 2 cut(s) 2760, 2786
EcoO109I RGGNCCY 3 cut(s) 490, 1814, 2698
EcoO65I GGTNACC 1 cut(s) 2000
EcoRI GAATTC 2 cut(s) 1920, 2398
EcoRII CCWGG 2 cut(s) 1671, 2265
EcoRV GATATC 3 cut(s) 563, 1249, 2834
EcoT14I CCWWGG 5 cut(s) 283, 2145, 2480, 2701, 2750
EcoT38I GRGCYC 1 cut(s) 1793
ErhI CCWWGG 5 cut(s) 283, 2145, 2480, 2701, 2750
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 65, 97
FaqI GGGAC 4 cut(s) 1112, 1724, 1827, 2422
FauI CCCGC 2 cut(s) 1087, 2206
FbaI TGATCA 2 cut(s) 604, 630
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 8 cut(s) 227, 299, 1162, 1386, 1664, 2271, 2688, 2810
FriOI GRGCYC 1 cut(s) 1793
Fsp4HI GCNGC 8 cut(s) 227, 299, 1162, 1386, 1664, 2271, 2688, 2810
FspBI CTAG 8 cut(s) 284, 1277, 1538, 1596, 2466, 2474, 2481, 2829
GlaI GCGC 1 cut(s) 821
GluI GCNGC 8 cut(s) 227, 299, 1162, 1386, 1664, 2271, 2688, 2810
GsaI CCCAGC 1 cut(s) 2178
GsuI CTGGAG 1 cut(s) 2130
HapII CCGG 2 cut(s) 688, 1807
HgaI GACGC 1 cut(s) 1153
HhaI GCGC 1 cut(s) 822
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 2 cut(s) 688, 1807
HphI GGTGA 4 cut(s) 640, 1030, 2030, 2240
Hpy166II GTNNAC 6 cut(s) 52, 140, 520, 1202, 1446, 2538
Hpy8I GTNNAC 6 cut(s) 52, 140, 520, 1202, 1446, 2538
HpyAV CCTTC 8 cut(s) 88, 1363, 1467, 1598, 2225, 2244, 2593, 2641
HpyCH4III ACNGT 7 cut(s) 383, 1199, 1396, 1450, 1468, 1483, 2535
HpyCH4IV ACGT 3 cut(s) 363, 1756, 2737
HpyF10VI GCNNNNNNNGC 8 cut(s) 278, 1106, 1121, 1382, 2210, 2467, 2696, 2815
HpySE526I ACGT 3 cut(s) 363, 1756, 2737
HspAI GCGC 1 cut(s) 820
KflI GGGWCCC 1 cut(s) 1814
Ksp22I TGATCA 2 cut(s) 604, 630
LmnI GCTCC 6 cut(s) 295, 798, 1105, 1393, 2023, 2851
Lsp1109I GCAGC 7 cut(s) 285, 1173, 1372, 1675, 2257, 2674, 2821
LweI GCATC 8 cut(s) 349, 945, 1336, 1488, 1870, 2338, 2757, 2805
MaeI CTAG 8 cut(s) 284, 1277, 1538, 1596, 2466, 2474, 2481, 2829
MaeII ACGT 3 cut(s) 363, 1756, 2737
MaeIII GTNAC 2 cut(s) 30, 2000
MbiI CCGCTC 1 cut(s) 229
MflI RGATCY 2 cut(s) 790, 1630
MhlI GDGCHC 1 cut(s) 1793
MlsI TGGCCA 1 cut(s) 1671
MluNI TGGCCA 1 cut(s) 1671
MlyI GAGTC 5 cut(s) 203, 721, 1694, 2404, 2426
MmeI TCCRAC 1 cut(s) 1415
Mox20I TGGCCA 1 cut(s) 1671
MscI TGGCCA 1 cut(s) 1671
MseI TTAA 9 cut(s) 6, 735, 959, 1242, 1542, 1832, 2033, 2370, 2660
MslI CAYNNNNRTG 1 cut(s) 1965
Msp20I TGGCCA 1 cut(s) 1671
MspA1I CMGCKG 2 cut(s) 1385, 2812
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 2 cut(s) 688, 1807
MspR9I CCNGG 2 cut(s) 1673, 2267
MvaI CCWGG 2 cut(s) 1673, 2267
MvnI CGCG 2 cut(s) 750, 2213
MwoI GCNNNNNNNGC 8 cut(s) 278, 1106, 1121, 1382, 2210, 2467, 2696, 2815
NlaIV GGNNCC 7 cut(s) 522, 1614, 1815, 1816, 2025, 2143, 2172
NmeAIII GCCGAG 1 cut(s) 372
NruI TCGCGA 1 cut(s) 750
NspI RCATGY 3 cut(s) 400, 1073, 2615
PaeI GCATGC 1 cut(s) 400
PceI AGGCCT 2 cut(s) 2470, 2755
PfeI GAWTC 8 cut(s) 357, 745, 899, 1213, 1619, 1980, 2072, 2327
PkrI GCNGC 8 cut(s) 228, 300, 1163, 1387, 1665, 2272, 2689, 2811
PleI GAGTC 5 cut(s) 202, 721, 1693, 2404, 2426
PmaCI CACGTG 1 cut(s) 1757
PmlI CACGTG 1 cut(s) 1757
PpsI GAGTC 5 cut(s) 202, 721, 1693, 2404, 2426
Ppu21I YACGTR 1 cut(s) 1757
PpuMI RGGWCCY 1 cut(s) 1814
PshBI ATTAAT 1 cut(s) 735
Psp5II RGGWCCY 1 cut(s) 1814
Psp6I CCWGG 2 cut(s) 1671, 2265
PspCI CACGTG 1 cut(s) 1757
PspEI GGTNACC 1 cut(s) 2000
PspFI CCCAGC 1 cut(s) 2174
PspGI CCWGG 2 cut(s) 1671, 2265
PspN4I GGNNCC 7 cut(s) 522, 1614, 1815, 1816, 2025, 2143, 2172
PspPI GGNCC 7 cut(s) 280, 490, 520, 931, 1562, 1814, 2698
PspPPI RGGWCCY 1 cut(s) 1814
PstI CTGCAG 5 cut(s) 274, 1163, 1570, 2190, 2811
PstNI CAGNNNCTG 2 cut(s) 1349, 2519
PsuI RGATCY 2 cut(s) 790, 1630
PvuII CAGCTG 1 cut(s) 1385
RruI TCGCGA 1 cut(s) 750
RsaI GTAC 5 cut(s) 1445, 1692, 1728, 2539, 2616
RsaNI GTAC 5 cut(s) 1444, 1691, 1727, 2538, 2615
RseI CAYNNNNRTG 1 cut(s) 1965
SaqAI TTAA 9 cut(s) 6, 735, 959, 1242, 1542, 1832, 2033, 2370, 2660
SatI GCNGC 8 cut(s) 227, 299, 1162, 1386, 1664, 2271, 2688, 2810
Sau96I GGNCC 7 cut(s) 280, 490, 520, 931, 1562, 1814, 2698
SchI GAGTC 5 cut(s) 203, 721, 1694, 2404, 2426
ScrFI CCNGG 2 cut(s) 1673, 2267
SduI GDGCHC 1 cut(s) 1793
SfaNI GCATC 8 cut(s) 349, 945, 1336, 1488, 1870, 2338, 2757, 2805
SfcI CTRYAG 6 cut(s) 270, 494, 1159, 1566, 2186, 2807
SinI GGWCC 3 cut(s) 520, 931, 1814
SmiMI CAYNNNNRTG 1 cut(s) 1965
SmlI CTYRAG 3 cut(s) 5, 1104, 2525
SmoI CTYRAG 3 cut(s) 5, 1104, 2525
SpeI ACTAGT 1 cut(s) 1537
SphI GCATGC 1 cut(s) 400
SseBI AGGCCT 2 cut(s) 2470, 2755
SsiI CCGC 8 cut(s) 227, 740, 934, 1080, 1645, 2213, 2273, 2812
SspI AATATT 2 cut(s) 718, 1240
SspMI CTAG 8 cut(s) 284, 1277, 1538, 1596, 2466, 2474, 2481, 2829
StuI AGGCCT 2 cut(s) 2470, 2755
StyD4I CCNGG 2 cut(s) 1671, 2265
StyI CCWWGG 5 cut(s) 283, 2145, 2480, 2701, 2750
TaaI ACNGT 7 cut(s) 383, 1199, 1396, 1450, 1468, 1483, 2535
TaiI ACGT 3 cut(s) 366, 1759, 2740
TaqI TCGA 7 cut(s) 197, 320, 474, 481, 891, 1864, 2038
TatI WGTACW 4 cut(s) 1443, 1726, 2537, 2614
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 8 cut(s) 357, 745, 899, 1213, 1619, 1980, 2072, 2327
Tru1I TTAA 9 cut(s) 6, 735, 959, 1242, 1542, 1832, 2033, 2370, 2660
Tru9I TTAA 9 cut(s) 6, 735, 959, 1242, 1542, 1832, 2033, 2370, 2660
TscAI CASTG 4 cut(s) 133, 1455, 1779, 2520
TseI GCWGC 7 cut(s) 298, 1161, 1385, 1663, 2270, 2687, 2809
TspGWI ACGGA 1 cut(s) 2195
TspRI CASTG 4 cut(s) 133, 1455, 1779, 2520
Vha464I CTTAAG 1 cut(s) 5
VpaK11BI GGWCC 3 cut(s) 520, 931, 1814
VspI ATTAAT 1 cut(s) 735
XagI CCTNNNNNAGG 2 cut(s) 2760, 2786
XapI RAATTY 7 cut(s) 904, 1187, 1221, 1834, 1920, 2398, 2792
XbaI TCTAGA 1 cut(s) 2473
XceI RCATGY 3 cut(s) 400, 1073, 2615
XcmI CCANNNNNNNNNTGG 1 cut(s) 1994
XmaJI CCTAGG 2 cut(s) 283, 2480
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 8 cut(s) 284, 1277, 1538, 1596, 2466, 2474, 2481, 2829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.