pycom05g29360

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
29799857 .. 29803124
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29360.4

Sequence Viewer

Length: 1140 bp
ATGGCAGATGCTGAGGTTGAAAGAAGACTGAAGGAAGCAACCTCAGCTGCTTTAACGGCCTCTTTAGTAGTCACTAACATAGATCAAAGGCTTGCTTCTCTTCAGTACTCAATGGCTCCTTCCTCTAGCACAACTTCACTGCCATCAAGTCAGCAATCAGCAATGACTTTTCCTAATATGCAGTTCCCTCAGGCAGCTTCAGTGGTTAAACCGTTGGGTCATCTTGGCGCTGCAGAACCAAGCTTGCATAGTTCTCCTGCTAGAGAGGAGGGAGAGGTACCTGAATCAGAGTTAGACCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAAGATACAAGAGAACCACCACCGAGTGAGCCCCCATTTGCTGCCAGACCTCCAGTACAAGCCTCTGTTCCACGGGTGCAACCGCATCCAGGCTGGTTTCCAGTGGAGGAAGAAATGAGCCCTCGGCAACTGAGCCGGATGGTACCCAAAGAACTTCCATTAGATCGAGATCCAATGCAGATTGAGAAGCGACCTCATCATTCATCTTTTTTCTCTAAGGTTGATAACTCTATTCCATCTGATAGGATTCTTCAAGACAATCAAAGATTTCCAAAAGAGGCATTTCATAGAGATGATCGGCTGAGATTCAACCATGCATCGGCTGGCTATCATTCAGTGTCAGGTGAGGAGATTCCCTTGAGTCGATCCTCTTCCATGAATAGAGATGTGGACTTTGAATCTGGACGAGCTATATCAAATGCAGAGACTCCTGCTGGAGCCTTACAGGAAATCGCAATGAAGTGTGGAGCCAAGGTGGAGTTTAGGCCAGCTTTGGTTGCTAGCACGGAACTCCAGTTTTACGTTGAGGCTTGGTTTGCAGGAGAGAAAATTGGTGAAGGAAGTGGTAAAACAAGAAGGGAAGCTCATTTCCAGGCTGCCGAGGGTTCTCTAAAAAACTTAGCCAATATATACCTTTCCCGCGTCAAGCTTGATTCTGTGCCTGTTAATGGGGAAATGAGCAAGTTTTCTAATGTTAACAACAATGGTTTTGTGGGTAATGCGAATTCTTTTGGTCGATCCAGTCATTTCCCAAAGAGGAGTCCCTGTCATCTTCAACTTCATCGGAGCCTTCTAGGCCACTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

380

Amino Acids

41.84

Weight (kDa)

6.72

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 277, 478
AccB1I GGYRCC 2 cut(s) 277, 478
AccII CGCG 1 cut(s) 978
AciI CCGC 3 cut(s) 310, 419, 976
AclWI GGATC 3 cut(s) 500, 696, 1068
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 1060
AcuI CTGAAG 3 cut(s) 50, 86, 183
AdeI CACNNNGTG 1 cut(s) 362
AfaI GTAC 4 cut(s) 107, 279, 393, 480
AfiI CCNNNNNNNGG 3 cut(s) 425, 655, 1004
AgsI TTSAA 5 cut(s) 20, 590, 646, 734, 1112
AjnI CCWGG 2 cut(s) 424, 927
AluBI AGCT 7 cut(s) 47, 197, 243, 746, 827, 920, 985
AluI AGCT 7 cut(s) 47, 197, 243, 746, 827, 920, 985
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 3 cut(s) 500, 696, 1068
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 4 cut(s) 57, 334, 821, 1132
ApeKI GCWGC 6 cut(s) 47, 194, 230, 328, 377, 932
ApoI RAATTY 1 cut(s) 1060
Asp718I GGTACC 2 cut(s) 277, 478
AspLEI GCGC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 692, 902
AsuNHI GCTAGC 1 cut(s) 836
AxyI CCTNAGG 1 cut(s) 189
BalI TGGCCA 1 cut(s) 336
BanI GGYRCC 2 cut(s) 277, 478
BanII GRGCYC 2 cut(s) 369, 458
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 2 cut(s) 12, 43
BbvI GCAGC 6 cut(s) 34, 206, 217, 340, 364, 919
BccI CCATC 3 cut(s) 151, 469, 580
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 426, 929
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 5 cut(s) 126, 261, 837, 1130, 1138
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 1131
BisI GCNGC 6 cut(s) 48, 195, 231, 329, 378, 933
BlsI GCNGC 6 cut(s) 49, 196, 232, 330, 379, 934
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 426, 929
BmiI GGNNCC 6 cut(s) 117, 279, 480, 775, 805, 1124
BmrFI CCNGG 2 cut(s) 426, 929
BmsI GCATC 2 cut(s) 430, 662
BmtI GCTAGC 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 3 cut(s) 372, 792, 833
Bpu10I CCTNAGC 2 cut(s) 12, 43
BpuEI CTTGAG 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 4 cut(s) 407, 458, 807, 936
BsaXI ACNNNNNCTCC 4 cut(s) 795, 825, 1087, 1117
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 655, 1004
Bse1I ACTGG 4 cut(s) 389, 437, 850, 1077
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 168, 798
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 2 cut(s) 426, 929
BseDI CCNNGG 4 cut(s) 407, 458, 807, 936
BseGI GGATG 2 cut(s) 421, 480
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 425, 655, 1004
BseMI GCAATG 2 cut(s) 168, 798
BseMII CTCAG 4 cut(s) 57, 203, 458, 629
BseNI ACTGG 4 cut(s) 389, 437, 850, 1077
BseRI GAGGAG 3 cut(s) 281, 698, 1108
BseXI GCAGC 6 cut(s) 34, 206, 217, 340, 364, 919
Bsh1236I CGCG 1 cut(s) 978
BshFI GGCC 4 cut(s) 59, 336, 823, 1134
BshNI GGYRCC 2 cut(s) 277, 478
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 1083
BslI CCNNNNNNNGG 3 cut(s) 425, 655, 1004
BsmAI GTCTC 1 cut(s) 755
BsmFI GGGAC 1 cut(s) 1083
BsnI GGCC 4 cut(s) 59, 336, 823, 1134
Bsp1286I GDGCHC 2 cut(s) 369, 458
Bsp143I GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
BspACI CCGC 3 cut(s) 310, 419, 976
BspANI GGCC 4 cut(s) 59, 336, 823, 1134
BspCNI CTCAG 5 cut(s) 4, 56, 202, 459, 630
BspFNI CGCG 1 cut(s) 978
BspLI GGNNCC 6 cut(s) 117, 279, 480, 775, 805, 1124
BspMAI CTGCAG 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 840
BspPI GGATC 3 cut(s) 500, 696, 1068
BspT107I GGYRCC 2 cut(s) 277, 478
BsrDI GCAATG 2 cut(s) 168, 798
BsrI ACTGG 4 cut(s) 389, 437, 850, 1077
BssECI CCNNGG 4 cut(s) 407, 458, 807, 936
BssMI GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
BssT1I CCWWGG 1 cut(s) 807
Bst2UI CCWGG 2 cut(s) 426, 929
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 105, 712
BstC8I GCNNGC 5 cut(s) 93, 245, 661, 825, 838
BstDEI CTNAG 7 cut(s) 12, 43, 189, 467, 552, 638, 955
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 421, 480
BstFNI CGCG 1 cut(s) 978
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 6 cut(s) 85, 502, 508, 634, 704, 1076
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
BstMWI GCNNNNNNNGC 5 cut(s) 44, 56, 833, 872, 1131
BstNI CCWGG 2 cut(s) 426, 929
BstSCI CCNGG 2 cut(s) 424, 927
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 978
BstV1I GCAGC 6 cut(s) 34, 206, 217, 340, 364, 919
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 4 cut(s) 59, 336, 823, 1134
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 2 cut(s) 421, 480
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 4 cut(s) 137, 207, 444, 678
Cac8I GCNNGC 5 cut(s) 93, 245, 661, 825, 838
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 230
CseI GACGC 1 cut(s) 967
Csp6I GTAC 4 cut(s) 106, 278, 392, 479
CviAII CATG 3 cut(s) 332, 650, 712
CviQI GTAC 4 cut(s) 106, 278, 392, 479
DdeI CTNAG 7 cut(s) 12, 43, 189, 467, 552, 638, 955
DpnI GATC 6 cut(s) 84, 501, 507, 633, 703, 1075
DpnII GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
DraIII CACNNNGTG 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 105, 712
EarI CTCTTC 2 cut(s) 105, 712
EciI GGCGGA 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 2 cut(s) 369, 458
Eco57I CTGAAG 3 cut(s) 50, 86, 183
Eco81I CCTNAGG 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 1060
EcoRII CCWGG 2 cut(s) 424, 927
EcoT14I CCWWGG 1 cut(s) 807
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 369, 458
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 3 cut(s) 335, 653, 715
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 1083
FatI CATG 3 cut(s) 331, 649, 711
FauI CCCGC 1 cut(s) 983
Fnu4HI GCNGC 6 cut(s) 48, 195, 231, 329, 378, 933
FokI GGATG 2 cut(s) 408, 487
FriOI GRGCYC 2 cut(s) 369, 458
Fsp4HI GCNGC 6 cut(s) 48, 195, 231, 329, 378, 933
FspBI CTAG 5 cut(s) 126, 261, 837, 1130, 1138
GlaI GCGC 1 cut(s) 229
GluI GCNGC 6 cut(s) 48, 195, 231, 329, 378, 933
GsuI CTGGAG 3 cut(s) 372, 792, 833
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 4 cut(s) 59, 336, 823, 1134
HapII CCGG 1 cut(s) 472
HgaI GACGC 1 cut(s) 967
HhaI GCGC 1 cut(s) 230
Hin1II CATG 3 cut(s) 335, 653, 715
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 2 cut(s) 241, 983
HinfI GANTC 9 cut(s) 284, 583, 642, 688, 697, 734, 763, 989, 1096
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 692, 902
Hpy166II GTNNAC 2 cut(s) 727, 1033
Hpy188I TCNGA 3 cut(s) 289, 577, 1122
Hpy188III TCNNGA 3 cut(s) 503, 590, 738
Hpy8I GTNNAC 2 cut(s) 727, 1033
HpyAV CCTTC 5 cut(s) 25, 129, 887, 906, 1136
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 9 cut(s) 181, 233, 247, 328, 415, 514, 653, 758, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 56, 833, 872, 1131
HpyF3I CTNAG 7 cut(s) 12, 43, 189, 467, 552, 638, 955
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 3 cut(s) 335, 653, 715
HspAI GCGC 1 cut(s) 228
KpnI GGTACC 2 cut(s) 281, 482
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
LmnI GCTCC 4 cut(s) 121, 773, 803, 1122
Lsp1109I GCAGC 6 cut(s) 34, 206, 217, 340, 364, 919
LweI GCATC 2 cut(s) 430, 662
MaeI CTAG 5 cut(s) 126, 261, 837, 1130, 1138
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 1 cut(s) 70
MalI GATC 6 cut(s) 84, 501, 507, 633, 703, 1075
MboI GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
MboII GAAGA 6 cut(s) 36, 92, 458, 578, 699, 1100
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 369, 458
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 2 cut(s) 885, 1060
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 3 cut(s) 706, 757, 1105
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 336
MseI TTAA 4 cut(s) 53, 207, 1002, 1032
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 2 cut(s) 426, 929
MvaI CCWGG 2 cut(s) 426, 929
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 5 cut(s) 44, 56, 833, 872, 1131
NdeII GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
NheI GCTAGC 1 cut(s) 836
NlaIII CATG 3 cut(s) 335, 653, 715
NlaIV GGNNCC 6 cut(s) 117, 279, 480, 775, 805, 1124
NmeAIII GCCGAG 2 cut(s) 439, 961
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 655
PfeI GAWTC 6 cut(s) 284, 583, 642, 688, 734, 989
PkrI GCNGC 6 cut(s) 49, 196, 232, 330, 379, 934
PleI GAGTC 3 cut(s) 705, 757, 1104
PpsI GAGTC 3 cut(s) 705, 757, 1104
Psp6I CCWGG 2 cut(s) 424, 927
PspGI CCWGG 2 cut(s) 424, 927
PspN4I GGNNCC 6 cut(s) 117, 279, 480, 775, 805, 1124
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 4 cut(s) 107, 279, 393, 480
RsaNI GTAC 4 cut(s) 106, 278, 392, 479
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 4 cut(s) 53, 207, 1002, 1032
SatI GCNGC 6 cut(s) 48, 195, 231, 329, 378, 933
Sau3AI GATC 6 cut(s) 82, 499, 505, 631, 701, 1073
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 3 cut(s) 706, 757, 1105
ScrFI CCNGG 2 cut(s) 426, 929
SduI GDGCHC 2 cut(s) 369, 458
SfaNI GCATC 2 cut(s) 430, 662
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 2 cut(s) 885, 1060
SsiI CCGC 3 cut(s) 310, 419, 976
SspMI CTAG 5 cut(s) 126, 261, 837, 1130, 1138
StyD4I CCNGG 2 cut(s) 424, 927
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 861
TaqI TCGA 3 cut(s) 502, 700, 1072
TasI AATT 2 cut(s) 885, 1060
TatI WGTACW 2 cut(s) 105, 391
TfiI GAWTC 6 cut(s) 284, 583, 642, 688, 734, 989
Tru1I TTAA 4 cut(s) 53, 207, 1002, 1032
Tru9I TTAA 4 cut(s) 53, 207, 1002, 1032
TscAI CASTG 4 cut(s) 144, 207, 444, 678
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 6 cut(s) 47, 194, 230, 328, 377, 932
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 528, 611, 728, 809, 1106
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 4 cut(s) 144, 207, 444, 678
XapI RAATTY 1 cut(s) 1060
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XspI CTAG 5 cut(s) 126, 261, 837, 1130, 1138
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.