Rroxscaffold_1G00068480

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007472
Physical Location & Seq
Reverse (-)
89636490 .. 89644969
8480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068480.1

Sequence Viewer

Length: 2871 bp
ATGCTTAAGCTTGTGTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCAAAGTCTTCTTCTTCTTCTTCTGTTCAGGACACATCGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGACTGCAGTTATGGCCCTAGGAGGGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGGAATAATGAAAAACAGCATCCATGTTTTTGGGGATTCAACGTATCGTCTGGACTATACAGTTCTTGCCTTGGCATGCTGAACCTAAGATGTCTTGGCATTGTATTTGATCTTGATGAAACGCTTATTGTTGCAAATACAATGCGTTCATTCGAGGATCGAATTGAGGGCCTACAGAGGAAAATAAACTGCGAGGTGGACCCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATACCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAGTTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGGTTGTTCCAGCCTTGTCTGACAACCATCAACCTATCATCCGGCCACTTATACGATTGCAGGAGAAAAATATTATCCTGACTCGCATTAATCCGCAGATTCGCGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTAGGAGCTACTTGACTGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTCTGCACAATGGCCGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTCGATCCAGAATCAAATTTGATAAACGCAAATAAATTACTGGACCGCATCGTTTGTGTCAAGTCTGGTTTAAGGAAGTCGCTGTTCAATGTCTTCCAAGAAAGTTTATGCCATCCTAAGATGGCGTTGGTGATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCATGTTGTTCCCGCATTTGCACCTTACTATGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTATGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGATAGTTTACTACAAAAGATTCCAGAAATTTTTTACGAAGATAATATTAAAGATATCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATACTTCTGCTTCAAATGGAAACAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAAAGAAGGCTGAAGGAAGCAACCTCAGCTGCTCCAACAGTCTCTTCAGCAGTCAATAACATCGATCTGAGGCTTGCTTCTCTTCAGTACACAGTGCCTCCTTCCAGCACAGTTTCACTACCAACAGCTCAACCATCAATGATGCCTTTTCATAATGTGCGGTTCCCTCAGTCAGCTTCACTAGTTAAACCTTTGGGTCATGTTGGCCCTGCAGATTTAGGTTTGCATGGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCCGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGACACAAGAGAGTCTGTACCAAGCGAACCTCCATTTCCTGTAAGACCCCAAGTACAAGTCTCTGTCCCACGGGTGCAATCACACACAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGAAAACTGAGCCGGATGGGACCCAAAGAACTTCCTTTAAATTCAGAACCCATGCAGATTGAGAAGCATCGACCTCATCATTCAGCTTTTTTCCCTAAAGTTGAGAGTTCTATGCCATCGGATAGAATTCTTCAAGAAAATCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTCAACCAAGCGATGTCTGGTTACCATTCATTCTCAGGTGAGGAGCCTCCCTTAAATCGATCATCTTCCAGCAACAGGGATTTTGACTTTGAATCTGGACGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAATGTGGAACCAAGGTGGAGTTCAGGCCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCTTGGTTCGCAGGAGAGAAAATTGGTGAAGGAACTGGGAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAAAAGTTAGCCAATATATACATTTCCCGTGGCAAGCCTGATTCTCTGCCCATTCATGGGGATGCAAGCAAGTTTTTGAATGTTAATAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTTCCAAAAGAGGACTCTCTTTCATCTTCAACTTCATCAGAGCCATCTAGGCCTCTGGACCCTAGGCTGGAAAGCTCTAAGAAGTCCGTGAGTTCAGTGTCTGCACTCAAGGAACTGTGTACAATGGAGGGTCTTGGTGTAGTTTTTCAACCACGGCCTCCACCACCTAATTCAATGGAGAAAGATGAAGTGCACGTACAGGTTGAAATAGATGGAGAGGTCTTGGGGAAGGGGATTGGCTTAACTTGGGATGAGGCTAAGATGGAGGCTGCTGAAAAGGCCCTCGGAAGTCTAAGATCAACACTATATGGTCAGAAACGTCAAGGTTCTCCAAGGCCTTTACAAGGGATGCCAAGCAAACGCCTGAAGCAGGAATTTCCACAAGTTCTGCAGCGGATGCCCTCTTCTGCTAGATATCCGAAAAACGCTCCTCCTGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

956

Amino Acids

107.16

Weight (kDa)

6.23

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 249 - 356 2.1e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 1621
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 759
AciI CCGC 8 cut(s) 236, 749, 943, 1089, 1525, 1654, 2282, 2821
AclWI GGATC 4 cut(s) 495, 807, 896, 1634
AcoI YGGCCR 3 cut(s) 698, 861, 1678
AcsI RAATTY 7 cut(s) 913, 1196, 1230, 1843, 1929, 2407, 2801
AcuI CTGAAG 7 cut(s) 614, 1140, 1380, 1395, 1397, 1433, 2813
AfaI GTAC 5 cut(s) 1454, 1701, 1737, 2548, 2625
AflII CTTAAG 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 1546
AjnI CCWGG 2 cut(s) 1680, 2274
AjuI GAANNNNNNNTTGG 6 cut(s) 18, 50, 1393, 1425, 2147, 2179
Alw21I GWGCWC 1 cut(s) 2622
Alw26I GTCTC 3 cut(s) 778, 1411, 1747
Alw44I GTGCAC 1 cut(s) 2618
AlwI GGATC 4 cut(s) 495, 807, 896, 1634
AlwNI CAGNNNCTG 2 cut(s) 1358, 2528
Ama87I CYCGRG 1 cut(s) 1071
ApaLI GTGCAC 1 cut(s) 2618
ApeKI GCWGC 7 cut(s) 307, 1170, 1394, 1672, 2279, 2696, 2818
ApoI RAATTY 7 cut(s) 913, 1196, 1230, 1843, 1929, 2407, 2801
AseI ATTAAT 1 cut(s) 744
AspA2I CCTAGG 2 cut(s) 292, 2489
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 8 cut(s) 289, 499, 529, 940, 1571, 1823, 2485, 2707
AsuHPI GGTGA 4 cut(s) 649, 1039, 2039, 2249
AvaI CYCGRG 1 cut(s) 1071
AvaII GGWCC 4 cut(s) 529, 940, 1823, 2485
AvrII CCTAGG 2 cut(s) 292, 2489
BaeGI GKGCMC 1 cut(s) 2622
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BalI TGGCCA 1 cut(s) 1680
BanI GGYRCC 1 cut(s) 1621
BanII GRGCYC 1 cut(s) 1802
BarI GAAGNNNNNNTAC 2 cut(s) 2607, 2639
BauI CACGAG 1 cut(s) 773
BbsI GAAGAC 2 cut(s) 195, 982
Bbv12I GWGCWC 1 cut(s) 2622
BbvCI CCTCAGC 1 cut(s) 1390
BbvI GCAGC 7 cut(s) 294, 1182, 1381, 1684, 2266, 2683, 2830
BceAI ACGGC 1 cut(s) 2597
BciT130I CCWGG 2 cut(s) 1682, 2276
BclI TGATCA 2 cut(s) 613, 639
BcoDI GTCTC 3 cut(s) 778, 1411, 1747
BcuI ACTAGT 1 cut(s) 1546
BfaI CTAG 7 cut(s) 293, 1286, 1547, 1605, 2475, 2490, 2838
BfmI CTRYAG 6 cut(s) 279, 503, 1168, 1575, 2195, 2816
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 796
BglI GCCNNNNNGGC 1 cut(s) 2476
BisI GCNGC 8 cut(s) 236, 308, 1171, 1395, 1673, 2280, 2697, 2819
BlnI CCTAGG 2 cut(s) 292, 2489
BlsI GCNGC 8 cut(s) 237, 309, 1172, 1396, 1674, 2281, 2698, 2820
Bme1390I CCNGG 2 cut(s) 1682, 2276
Bme18I GGWCC 4 cut(s) 529, 940, 1823, 2485
BmeT110I CYCGRG 1 cut(s) 1071
BmgT120I GGNCC 8 cut(s) 289, 499, 529, 940, 1571, 1823, 2485, 2707
BmiI GGNNCC 9 cut(s) 531, 1529, 1623, 1824, 1825, 2034, 2152, 2181, 2487
BmrFI CCNGG 2 cut(s) 1682, 2276
BmrI ACTGGG 1 cut(s) 2256
BmsI GCATC 8 cut(s) 358, 954, 1345, 1497, 1879, 2347, 2766, 2814
BmuI ACTGGG 1 cut(s) 2256
BpiI GAAGAC 2 cut(s) 195, 982
BpmI CTGGAG 1 cut(s) 2139
Bpu10I CCTNAGC 1 cut(s) 1390
BpuEI CTTGAG 2 cut(s) 1098, 2519
Bsa29I ATCGAT 2 cut(s) 1428, 2047
BsaAI YACGTR 1 cut(s) 2623
BsaI GGTCTC 1 cut(s) 778
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1447, 1477
Bse1I ACTGG 4 cut(s) 126, 942, 1781, 2251
Bse3DI GCAATG 1 cut(s) 2145
BseBI CCWGG 2 cut(s) 1682, 2276
BseCI ATCGAT 2 cut(s) 1428, 2047
BseMI GCAATG 1 cut(s) 2145
BseMII CTCAG 8 cut(s) 645, 662, 1404, 1424, 1547, 1802, 2037, 2435
BseNI ACTGG 4 cut(s) 126, 942, 1781, 2251
BseRI GAGGAG 4 cut(s) 317, 1101, 2045, 2847
BseSI GKGCMC 1 cut(s) 2622
BseXI GCAGC 7 cut(s) 294, 1182, 1381, 1684, 2266, 2683, 2830
BseYI CCCAGC 1 cut(s) 2183
BsgI GTGCAG 2 cut(s) 838, 2514
Bsh1236I CGCG 1 cut(s) 759
BshNI GGYRCC 1 cut(s) 1621
BshVI ATCGAT 2 cut(s) 1428, 2047
BsiHKAI GWGCWC 1 cut(s) 2622
BsiHKCI CYCGRG 1 cut(s) 1071
BsiSI CCGG 2 cut(s) 697, 1816
BslFI GGGAC 4 cut(s) 1121, 1733, 1836, 2431
BsmAI GTCTC 3 cut(s) 778, 1411, 1747
BsmFI GGGAC 4 cut(s) 1121, 1733, 1836, 2431
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 1071
Bsp1286I GDGCHC 2 cut(s) 1802, 2622
Bsp1407I TGTACA 1 cut(s) 2546
Bsp68I TCGCGA 1 cut(s) 759
BspACI CCGC 8 cut(s) 236, 749, 943, 1089, 1525, 1654, 2282, 2821
BspCNI CTCAG 8 cut(s) 646, 661, 1403, 1425, 1546, 1803, 2036, 2434
BspDI ATCGAT 2 cut(s) 1428, 2047
BspFNI CGCG 1 cut(s) 759
BspLI GGNNCC 9 cut(s) 531, 1529, 1623, 1824, 1825, 2034, 2152, 2181, 2487
BspMAI CTGCAG 5 cut(s) 283, 1172, 1579, 2199, 2820
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 4 cut(s) 495, 807, 896, 1634
BspT107I GGYRCC 1 cut(s) 1621
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 2145
BsrGI TGTACA 1 cut(s) 2546
BsrI ACTGG 4 cut(s) 126, 942, 1781, 2251
BssNAI GTATAC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 5 cut(s) 292, 400, 2154, 2489, 2759
Bst1107I GTATAC 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 1682, 2276
Bst4CI ACNGT 5 cut(s) 392, 1405, 1459, 1477, 2544
Bst6I CTCTTC 8 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785, 2836
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1130, 2824
BstAUI TGTACA 1 cut(s) 2546
BstBAI YACGTR 1 cut(s) 2623
BstC8I GCNNGC 8 cut(s) 407, 555, 833, 1168, 1440, 2172, 2330, 2362
BstDSI CCRYGG 3 cut(s) 1751, 2323, 2579
BstEII GGTNACC 1 cut(s) 2009
BstENI CCTNNNNNAGG 2 cut(s) 2769, 2795
BstFNI CGCG 1 cut(s) 759
BstHHI GCGC 1 cut(s) 831
BstMAI GTCTC 3 cut(s) 778, 1411, 1747
BstMWI GCNNNNNNNGC 8 cut(s) 287, 1115, 1130, 1391, 2219, 2476, 2705, 2824
BstNI CCWGG 2 cut(s) 1682, 2276
BstNSI RCATGY 2 cut(s) 409, 1082
BstPI GGTNACC 1 cut(s) 2009
BstSCI CCNGG 2 cut(s) 1680, 2274
BstSFI CTRYAG 6 cut(s) 279, 503, 1168, 1575, 2195, 2816
BstSLI GKGCMC 1 cut(s) 2622
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 7 cut(s) 294, 1182, 1381, 1684, 2266, 2683, 2830
BstV2I GAAGAC 2 cut(s) 195, 982
BstX2I RGATCY 2 cut(s) 799, 1639
BstXI CCANNNNNNTGG 1 cut(s) 360
BstYI RGATCY 2 cut(s) 799, 1639
BstZ17I GTATAC 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 1428, 2047
BsuTUI ATCGAT 2 cut(s) 1428, 2047
BtgI CCRYGG 3 cut(s) 1751, 2323, 2579
BtgZI GCGATG 2 cut(s) 216, 2015
BtsIMutI CAGTG 4 cut(s) 133, 1464, 1788, 2529
BtuMI TCGCGA 1 cut(s) 759
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 8 cut(s) 407, 555, 833, 1168, 1440, 2172, 2330, 2362
CaiI CAGNNNCTG 2 cut(s) 1358, 2528
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 8 cut(s) 289, 499, 529, 940, 1571, 1823, 2485, 2707
ClaI ATCGAT 2 cut(s) 1428, 2047
CseI GACGC 1 cut(s) 1162
Csp6I GTAC 5 cut(s) 1453, 1700, 1736, 2547, 2624
CviQI GTAC 5 cut(s) 1453, 1700, 1736, 2547, 2624
DraI TTTAAA 1 cut(s) 1842
EaeI YGGCCR 3 cut(s) 698, 861, 1678
Eam1104I CTCTTC 8 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785, 2836
EarI CTCTTC 8 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785, 2836
EciI GGCGGA 1 cut(s) 1669
Eco130I CCWWGG 5 cut(s) 292, 400, 2154, 2489, 2759
Eco147I AGGCCT 2 cut(s) 2479, 2764
Eco24I GRGCYC 1 cut(s) 1802
Eco31I GGTCTC 1 cut(s) 778
Eco32I GATATC 2 cut(s) 1258, 2843
Eco47I GGWCC 4 cut(s) 529, 940, 1823, 2485
Eco57I CTGAAG 7 cut(s) 614, 1140, 1380, 1395, 1397, 1433, 2813
Eco88I CYCGRG 1 cut(s) 1071
Eco91I GGTNACC 1 cut(s) 2009
EcoNI CCTNNNNNAGG 2 cut(s) 2769, 2795
EcoO109I RGGNCCY 3 cut(s) 499, 1823, 2707
EcoO65I GGTNACC 1 cut(s) 2009
EcoRI GAATTC 2 cut(s) 1929, 2407
EcoRII CCWGG 2 cut(s) 1680, 2274
EcoRV GATATC 2 cut(s) 1258, 2843
EcoT14I CCWWGG 5 cut(s) 292, 400, 2154, 2489, 2759
EcoT38I GRGCYC 1 cut(s) 1802
ErhI CCWWGG 5 cut(s) 292, 400, 2154, 2489, 2759
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 65, 97
FaqI GGGAC 4 cut(s) 1121, 1733, 1836, 2431
FauI CCCGC 1 cut(s) 1096
FbaI TGATCA 2 cut(s) 613, 639
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 8 cut(s) 236, 308, 1171, 1395, 1673, 2280, 2697, 2819
FriOI GRGCYC 1 cut(s) 1802
Fsp4HI GCNGC 8 cut(s) 236, 308, 1171, 1395, 1673, 2280, 2697, 2819
FspBI CTAG 7 cut(s) 293, 1286, 1547, 1605, 2475, 2490, 2838
GlaI GCGC 1 cut(s) 830
GluI GCNGC 8 cut(s) 236, 308, 1171, 1395, 1673, 2280, 2697, 2819
GsaI CCCAGC 1 cut(s) 2187
GsuI CTGGAG 1 cut(s) 2139
HapII CCGG 2 cut(s) 697, 1816
HgaI GACGC 1 cut(s) 1162
HhaI GCGC 1 cut(s) 831
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 2 cut(s) 697, 1816
HphI GGTGA 4 cut(s) 649, 1039, 2039, 2249
Hpy166II GTNNAC 7 cut(s) 52, 140, 529, 1211, 1455, 2547, 2620
Hpy8I GTNNAC 7 cut(s) 52, 140, 529, 1211, 1455, 2547, 2620
HpyAV CCTTC 8 cut(s) 88, 1365, 1372, 1476, 1607, 2234, 2253, 2650
HpyCH4III ACNGT 5 cut(s) 392, 1405, 1459, 1477, 2544
HpyCH4IV ACGT 3 cut(s) 372, 2622, 2746
HpyF10VI GCNNNNNNNGC 8 cut(s) 287, 1115, 1130, 1391, 2219, 2476, 2705, 2824
HpySE526I ACGT 3 cut(s) 372, 2622, 2746
HspAI GCGC 1 cut(s) 829
KflI GGGWCCC 1 cut(s) 1823
Ksp22I TGATCA 2 cut(s) 613, 639
LmnI GCTCC 6 cut(s) 304, 807, 1114, 1402, 2032, 2860
Lsp1109I GCAGC 7 cut(s) 294, 1182, 1381, 1684, 2266, 2683, 2830
LweI GCATC 8 cut(s) 358, 954, 1345, 1497, 1879, 2347, 2766, 2814
MaeI CTAG 7 cut(s) 293, 1286, 1547, 1605, 2475, 2490, 2838
MaeII ACGT 3 cut(s) 372, 2622, 2746
MaeIII GTNAC 2 cut(s) 30, 2009
MbiI CCGCTC 1 cut(s) 238
MflI RGATCY 2 cut(s) 799, 1639
MhlI GDGCHC 2 cut(s) 1802, 2622
MlsI TGGCCA 1 cut(s) 1680
MluNI TGGCCA 1 cut(s) 1680
MlyI GAGTC 5 cut(s) 203, 730, 1703, 2413, 2435
MmeI TCCRAC 1 cut(s) 1424
Mox20I TGGCCA 1 cut(s) 1680
MscI TGGCCA 1 cut(s) 1680
MseI TTAA 9 cut(s) 6, 744, 968, 1251, 1551, 1841, 2042, 2379, 2669
MslI CAYNNNNRTG 2 cut(s) 1974, 2355
Msp20I TGGCCA 1 cut(s) 1680
MspA1I CMGCKG 2 cut(s) 1394, 2821
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 2 cut(s) 697, 1816
MspR9I CCNGG 2 cut(s) 1682, 2276
MvaI CCWGG 2 cut(s) 1682, 2276
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 8 cut(s) 287, 1115, 1130, 1391, 2219, 2476, 2705, 2824
NlaIV GGNNCC 9 cut(s) 531, 1529, 1623, 1824, 1825, 2034, 2152, 2181, 2487
NruI TCGCGA 1 cut(s) 759
NspI RCATGY 2 cut(s) 409, 1082
PaeI GCATGC 1 cut(s) 409
PceI AGGCCT 2 cut(s) 2479, 2764
PfeI GAWTC 8 cut(s) 366, 754, 908, 1222, 1628, 1989, 2081, 2336
PkrI GCNGC 8 cut(s) 237, 309, 1172, 1396, 1674, 2281, 2698, 2820
PleI GAGTC 5 cut(s) 202, 730, 1702, 2413, 2435
PpsI GAGTC 5 cut(s) 202, 730, 1702, 2413, 2435
Ppu21I YACGTR 1 cut(s) 2623
PpuMI RGGWCCY 1 cut(s) 1823
PshBI ATTAAT 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 1823
Psp6I CCWGG 2 cut(s) 1680, 2274
PspEI GGTNACC 1 cut(s) 2009
PspFI CCCAGC 1 cut(s) 2183
PspGI CCWGG 2 cut(s) 1680, 2274
PspN4I GGNNCC 9 cut(s) 531, 1529, 1623, 1824, 1825, 2034, 2152, 2181, 2487
PspPI GGNCC 8 cut(s) 289, 499, 529, 940, 1571, 1823, 2485, 2707
PspPPI RGGWCCY 1 cut(s) 1823
PstI CTGCAG 5 cut(s) 283, 1172, 1579, 2199, 2820
PstNI CAGNNNCTG 2 cut(s) 1358, 2528
PsuI RGATCY 2 cut(s) 799, 1639
PvuII CAGCTG 1 cut(s) 1394
RruI TCGCGA 1 cut(s) 759
RsaI GTAC 5 cut(s) 1454, 1701, 1737, 2548, 2625
RsaNI GTAC 5 cut(s) 1453, 1700, 1736, 2547, 2624
RseI CAYNNNNRTG 2 cut(s) 1974, 2355
SaqAI TTAA 9 cut(s) 6, 744, 968, 1251, 1551, 1841, 2042, 2379, 2669
SatI GCNGC 8 cut(s) 236, 308, 1171, 1395, 1673, 2280, 2697, 2819
Sau96I GGNCC 8 cut(s) 289, 499, 529, 940, 1571, 1823, 2485, 2707
SchI GAGTC 5 cut(s) 203, 730, 1703, 2413, 2435
ScrFI CCNGG 2 cut(s) 1682, 2276
SduI GDGCHC 2 cut(s) 1802, 2622
SfaNI GCATC 8 cut(s) 358, 954, 1345, 1497, 1879, 2347, 2766, 2814
SfcI CTRYAG 6 cut(s) 279, 503, 1168, 1575, 2195, 2816
SinI GGWCC 4 cut(s) 529, 940, 1823, 2485
SmiMI CAYNNNNRTG 2 cut(s) 1974, 2355
SmlI CTYRAG 3 cut(s) 5, 1113, 2534
SmoI CTYRAG 3 cut(s) 5, 1113, 2534
SpeI ACTAGT 1 cut(s) 1546
SphI GCATGC 1 cut(s) 409
SseBI AGGCCT 2 cut(s) 2479, 2764
SsiI CCGC 8 cut(s) 236, 749, 943, 1089, 1525, 1654, 2282, 2821
SspI AATATT 2 cut(s) 727, 1249
SspMI CTAG 7 cut(s) 293, 1286, 1547, 1605, 2475, 2490, 2838
StuI AGGCCT 2 cut(s) 2479, 2764
StyD4I CCNGG 2 cut(s) 1680, 2274
StyI CCWWGG 5 cut(s) 292, 400, 2154, 2489, 2759
TaaI ACNGT 5 cut(s) 392, 1405, 1459, 1477, 2544
TaiI ACGT 3 cut(s) 375, 2625, 2749
TaqI TCGA 7 cut(s) 329, 483, 490, 900, 1428, 1873, 2047
TatI WGTACW 3 cut(s) 1452, 1735, 2546
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 8 cut(s) 366, 754, 908, 1222, 1628, 1989, 2081, 2336
Tru1I TTAA 9 cut(s) 6, 744, 968, 1251, 1551, 1841, 2042, 2379, 2669
Tru9I TTAA 9 cut(s) 6, 744, 968, 1251, 1551, 1841, 2042, 2379, 2669
TscAI CASTG 4 cut(s) 133, 1464, 1788, 2529
TseI GCWGC 7 cut(s) 307, 1170, 1394, 1672, 2279, 2696, 2818
TspGWI ACGGA 2 cut(s) 2204, 2503
TspRI CASTG 4 cut(s) 133, 1464, 1788, 2529
Vha464I CTTAAG 1 cut(s) 5
VneI GTGCAC 1 cut(s) 2618
VpaK11BI GGWCC 4 cut(s) 529, 940, 1823, 2485
VspI ATTAAT 1 cut(s) 744
XagI CCTNNNNNAGG 2 cut(s) 2769, 2795
XapI RAATTY 7 cut(s) 913, 1196, 1230, 1843, 1929, 2407, 2801
XceI RCATGY 2 cut(s) 409, 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 2003
XmaJI CCTAGG 2 cut(s) 292, 2489
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 7 cut(s) 293, 1286, 1547, 1605, 2475, 2490, 2838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.