Prupe.4G043500_v2.0.a1

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0007472
Physical Location & Seq
Forward (+)
2080501 .. 2089301
8801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G043500.1

Sequence Viewer

Length: 2877 bp
ATGTATAAGTCGGTGGTGTATAAAGGTGAAGAGTTACTTGGGGAGGTAGAAATATACCCAGAAGAGAACGAGAACAAGAACAAGAACAAGAATTTGGTTGATGAGTTGAAGGAAATCAGAATAAGCTATTTTTCGCAATCAAGTGAGAGATGTCCACCAGTGGCAGTGCTTCATACCATAAGCTCTCATGGTGTTTGCTTCAAAATGGAGTCAAAGACCTCGCAGTCTCAGGACACGCCGCTCTTTCTTTTGCACTCCTCGTGTGTCATGGAGAACAAGACTGCAGTAATGCCGCTAGGAGGGGAGGAGCTCCATTTGGTTGCCATGCGCTCCAGGAATGGTGATAAAAGGTATCCATGTTTCTGGGGATTCAGTGTTGCACCAGGACTCTACAATTCTTGCCTTGTCATGCTGAACCTTAGATGTCTTGGCATTGTGTTTGATCTTGATGAAACACTCATTGTTGCAAATACAATGCGCTCGTTTGAGGATCGAATTGAGGCCCTACAGAGGAAGATAAGCAGTGAGGTAGACCCACAACGCATTTCTGGCATGCTTGCAGAGATCAAGCGATATCAAGATGACAAGTTTATATTGAAGCAGTATGCTGAAAATGATCAAGTTGTTGAAAACGGGAGGGTGATCAAAACTCAATCTGAGGCTGTTCCAGCCTTGTCCGATAATCATCAACCTATTATTCGGCCACTTATAAGGTTACACGAGAAAAACATTATACTGACTCGCATTAATCCACAGATTCGTGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTCGGAGTTACTTGACTGCAAGAGGGCGCAAGCGCTTTGAGGTTTATGTTTGCACAATGGCTGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTGGATCCTGATTCAAATCTGATAAACTCGAACAAATTATTGGATCGCATTGTGTGTGTCAAGTCTGGTTCAAGGAAGTCGTTGTTCAATGTCTTCCAAGAAAGCTTATGCCATCCTAAGATGGCATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCATGTTGTTCCTGCATTTGCGCCATACTATGCTCCTCAAGCTGAGGCAAATAATGCCGTTCCTGTCCTGTGTGTTGCAAGAAATGTTGCCTGCAATGTCAGAGGTGGATTTTTTAGAGAATTTGATGACAGTCTTCTACAAAAGATTCCTGAAGTTTTCTATGAAGACGATATTAAAGATGTCCCTTCTCCTGATGTGAGCAATTATCTAGTTTCAGAGGATGATTCTTCTGCTTTAAATGGAAACAGGGACCCTCTTCCTTTTGATGGCATAACAGATGTTGAGGTTGAAAGAAGAATGAAGGAAGCAACCCCAGCTGCTTCAATGGTATCTTCAGTTTTCACTAGCATAGATCCAAGGCTTGCTCCTCTTCAGTACACAGTGCCTCCTTCTAGCACACTTTCACTGCCAACAACTCAGCCATCAGTGATGTCTTTTCCTAGTATACAGTTCCCTCAGGCAGCTTCACTGGTTAAACCTTTGGGTCATGTTGGCTCTGCAGAACCAAGCTTGCAAAGTTCTCCTGCTAGAGAGGAGGGTGAGGTACCTGAATCGGAATTAGACCCTGATACAAGGCGGAGGCTGCTGATTTTGCAGCATGGCCAAGATACAAGAGATCAACCACCAAGTGAGCCTCCATTTCCTGTAAGACCTCCAATGCAAGCCTCTGTTCCACGAGCGCAATCACGTCCAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGGCAACTGAGCCGGATGGTACCCAAAGATCTTCCTTTAGATCCAGAAACAGTCCAGATTGAGAAGCATCGACCTCATCACTCGTCTTTTTTCCCTAAGGTTGAGAATTCGATTCCATCTGATAGAATTCTTCAAGAAAACCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTCAACCATGCATTGTCTGGTTATCATTCATTGTCAGGTGAGGAGATTCCCTTAAGTCGATCCTCTTCCAGCAACAGAGATGTTGACTTTGAATCTGGACGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAGTGTGGAGCCAAGGTGGAGTTTAGGCCAGCTTTGGTTGCTGGTACGGAACTGCAGTTTTATGTTGAGGCTTGGTTTGCTGGAGAGAAAATTGGTGAAGGAAGTGGTAAAACGAGAAGGGAAGCTCATTACCAGGCTGCTGAGGGTTCTCTAAAAAATTTAGCCAATATATACCTTTCCCGTGTCAAGCCTGATTCTGTGTCCGTTCATGGGGATATGAACAAGTTTCCTAATGTTAACAGCAATGGTTTTGCCGGTAATTTGAATTCTTTTGGGATCCAGCCATTTCCCAAAGAGGAGTCCCTGTCTTCTTCAACTTCATCAGAGCCTTCTAGGCCACTAGATCCTAGGCTGGAAGGCTCTAAAAAGTCAATGAGTTCAGTGTCTACACTCAAAGAACTTTGTATGATGGAGGGCCTTGGTGTAGTTTTCCAACCACGACCTCCACCTTCAACTAATTCAGTCGAGAAAGATGAAGTTCATGTACAGGTTGAAATAGATGGAGAGGTTTTGGGGAAGGGAATTGGATTGACGTGGGATGAGGCTAAGATGCAGGCTGCTGAAAAGGCGCTCGGAAGTCTAACATCAACGCTATATGCTCAAAAACGTCAGGGTTCTCCAAGGTCTTTGCAAGGGATGTCCAGTAAACGTATGAAGCAGGAGTTTCCACAAGTTTTGCAACGAATGCCCTCTTCTGCTAGATATCCGAAAAATGCTCCACCAGTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

959

Amino Acids

107.38

Weight (kDa)

6.05

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AasI GACNNNNNNGTC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 799
Acc65I GGTACC 2 cut(s) 1624, 1825
AccB1I GGYRCC 2 cut(s) 1624, 1825
AccBSI CCGCTC 1 cut(s) 241
AccI GTMKAC 3 cut(s) 531, 1525, 2531
AciI CCGC 3 cut(s) 239, 293, 1657
AcoI YGGCCR 2 cut(s) 701, 1681
AcsI RAATTY 6 cut(s) 91, 1199, 1912, 1932, 2302, 2410
AcuI CTGAAG 3 cut(s) 1251, 1398, 1436
AdeI CACNNNGTG 1 cut(s) 1709
AfaI GTAC 5 cut(s) 1457, 1626, 1827, 2191, 2631
AfeI AGCGCT 1 cut(s) 839
AfiI CCNNNNNNNGG 4 cut(s) 299, 510, 1346, 2355
AflII CTTAAG 1 cut(s) 2044
AjiI CACGTC 2 cut(s) 1769, 2679
AjnI CCWGG 4 cut(s) 332, 382, 1771, 2277
AjuI GAANNNNNNNTTGG 6 cut(s) 21, 53, 77, 109, 923, 955
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 231, 781
Ama87I CYCGRG 1 cut(s) 1074
Aor51HI AGCGCT 1 cut(s) 839
AoxI GGCC 6 cut(s) 501, 701, 1681, 2171, 2480, 2560
ApeKI GCWGC 6 cut(s) 1397, 1541, 1663, 1675, 2282, 2702
ApoI RAATTY 6 cut(s) 91, 1199, 1912, 1932, 2302, 2410
AseI ATTAAT 1 cut(s) 747
Asp718I GGTACC 2 cut(s) 1624, 1825
AspA2I CCTAGG 1 cut(s) 2492
AspLEI GCGC 7 cut(s) 330, 480, 834, 840, 1102, 1762, 2716
AspS9I GGNCC 3 cut(s) 502, 1330, 2560
AsuHPI GGTGA 6 cut(s) 38, 353, 652, 1631, 2042, 2252
AvaI CYCGRG 1 cut(s) 1074
AvaII GGWCC 1 cut(s) 1330
AvrII CCTAGG 1 cut(s) 2492
AxyI CCTNAGG 2 cut(s) 1536, 1902
BaeI ACNNNNGTAYC 2 cut(s) 756, 789
BalI TGGCCA 1 cut(s) 1683
BamHI GGATCC 2 cut(s) 904, 2421
BanI GGYRCC 2 cut(s) 1624, 1825
BanII GRGCYC 2 cut(s) 312, 1805
BarI GAAGNNNNNNTAC 2 cut(s) 2613, 2645
BauI CACGAG 4 cut(s) 259, 719, 776, 1755
BbsI GAAGAC 4 cut(s) 985, 1205, 1251, 2445
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 2 cut(s) 1122, 2286
BbvI GCAGC 6 cut(s) 1384, 1553, 1650, 1687, 2269, 2689
BccI CCATC 8 cut(s) 1015, 1020, 1340, 1510, 1816, 1930, 2548, 2639
BceAI ACGGC 2 cut(s) 1121, 1823
BciT130I CCWGG 4 cut(s) 334, 384, 1773, 2279
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 2 cut(s) 616, 642
BcoDI GTCTC 2 cut(s) 231, 781
BfmI CTRYAG 4 cut(s) 282, 506, 1578, 2198
BfoI RGCGCY 2 cut(s) 841, 2717
BfrI CTTAAG 1 cut(s) 2044
BfuAI ACCTGC 1 cut(s) 799
BfuI GTATCC 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 2479
BglII AGATCT 1 cut(s) 1834
BisI GCNGC 8 cut(s) 239, 293, 1398, 1542, 1664, 1676, 2283, 2703
BlnI CCTAGG 1 cut(s) 2492
BlsI GCNGC 8 cut(s) 240, 294, 1399, 1543, 1665, 1677, 2284, 2704
Bme1390I CCNGG 4 cut(s) 334, 384, 1773, 2279
Bme18I GGWCC 1 cut(s) 1330
BmeT110I CYCGRG 1 cut(s) 1074
BmgBI CACGTC 2 cut(s) 1769, 2679
BmgT120I GGNCC 3 cut(s) 502, 1330, 2560
BmiI GGNNCC 7 cut(s) 906, 1331, 1332, 1626, 1827, 2155, 2423
BmrFI CCNGG 4 cut(s) 334, 384, 1773, 2279
BmsI GCATC 2 cut(s) 1882, 2685
BpiI GAAGAC 4 cut(s) 985, 1205, 1251, 2445
BpmI CTGGAG 3 cut(s) 316, 2142, 2247
Bpu10I CCTNAGC 2 cut(s) 1122, 2286
BpuEI CTTGAG 1 cut(s) 1101
BsaBI GATNNNNATC 2 cut(s) 684, 915
BsaI GGTCTC 1 cut(s) 781
BsaJI CCNNGG 7 cut(s) 1073, 1436, 1805, 2157, 2492, 2563, 2765
BsaXI ACNNNNNCTCC 6 cut(s) 1450, 1480, 2145, 2175, 2435, 2465
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 510, 1346, 2355
Bse118I RCCGGY 1 cut(s) 2399
Bse1I ACTGG 5 cut(s) 158, 1554, 1784, 2787, 2867
Bse21I CCTNAGG 2 cut(s) 1536, 1902
Bse3DI GCAATG 3 cut(s) 1180, 2148, 2395
Bse8I GATNNNNATC 2 cut(s) 684, 915
BseBI CCWGG 4 cut(s) 334, 384, 1773, 2279
BseDI CCNNGG 7 cut(s) 1073, 1436, 1805, 2157, 2492, 2563, 2765
BseGI GGATG 6 cut(s) 1012, 1063, 1306, 1827, 2689, 2787
BseJI GATNNNNATC 2 cut(s) 684, 915
BseLI CCNNNNNNNGG 4 cut(s) 299, 510, 1346, 2355
BseMI GCAATG 3 cut(s) 1180, 2148, 2395
BseMII CTCAG 7 cut(s) 242, 648, 1113, 1511, 1550, 1805, 2277
BseNI ACTGG 5 cut(s) 158, 1554, 1784, 2787, 2867
BseRI GAGGAG 7 cut(s) 247, 320, 1104, 1437, 1628, 2048, 2456
BseXI GCAGC 6 cut(s) 1384, 1553, 1650, 1687, 2269, 2689
BseYI CCCAGC 1 cut(s) 1393
BshFI GGCC 6 cut(s) 503, 703, 1683, 2173, 2482, 2562
BshNI GGYRCC 2 cut(s) 1624, 1825
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 1074
BsiSI CCGG 2 cut(s) 1819, 2400
BslFI GGGAC 3 cut(s) 1247, 1343, 2431
BslI CCNNNNNNNGG 4 cut(s) 299, 510, 1346, 2355
BsmAI GTCTC 2 cut(s) 231, 781
BsmFI GGGAC 3 cut(s) 1247, 1343, 2431
BsmI GAATGC 1 cut(s) 2835
BsnI GGCC 6 cut(s) 503, 703, 1683, 2173, 2482, 2562
Bso31I GGTCTC 1 cut(s) 781
BsoBI CYCGRG 1 cut(s) 1074
Bsp1286I GDGCHC 2 cut(s) 312, 1805
Bsp1407I TGTACA 1 cut(s) 2629
BspACI CCGC 3 cut(s) 239, 293, 1657
BspANI GGCC 6 cut(s) 503, 703, 1683, 2173, 2482, 2562
BspCNI CTCAG 7 cut(s) 241, 649, 1114, 1510, 1549, 1806, 2278
BspLI GGNNCC 7 cut(s) 906, 1331, 1332, 1626, 1827, 2155, 2423
BspMAI CTGCAG 3 cut(s) 286, 1582, 2202
BspMI ACCTGC 1 cut(s) 799
BspT107I GGYRCC 2 cut(s) 1624, 1825
BspTI CTTAAG 1 cut(s) 2044
BspTNI GGTCTC 1 cut(s) 781
BsrBI CCGCTC 1 cut(s) 241
BsrDI GCAATG 3 cut(s) 1180, 2148, 2395
BsrFI RCCGGY 1 cut(s) 2399
BsrGI TGTACA 1 cut(s) 2629
BsrI ACTGG 5 cut(s) 158, 1554, 1784, 2787, 2867
BssAI RCCGGY 1 cut(s) 2399
BssECI CCNNGG 7 cut(s) 1073, 1436, 1805, 2157, 2492, 2563, 2765
BssNAI GTATAC 1 cut(s) 1526
BssSI CACGAG 4 cut(s) 259, 719, 776, 1755
BssT1I CCWWGG 5 cut(s) 1436, 2157, 2492, 2563, 2765
Bst1107I GTATAC 1 cut(s) 1526
Bst2BI CACGAG 4 cut(s) 259, 719, 776, 1755
Bst2UI CCWGG 4 cut(s) 334, 384, 1773, 2279
Bst4CI ACNGT 4 cut(s) 1211, 1462, 1530, 1858
Bst6I CTCTTC 7 cut(s) 24, 57, 1341, 1455, 1788, 2062, 2842
BstAFI CTTAAG 1 cut(s) 2044
BstAPI GCANNNNNTGC 2 cut(s) 1133, 2830
BstAUI TGTACA 1 cut(s) 2629
BstC8I GCNNGC 9 cut(s) 554, 558, 836, 1171, 1443, 1592, 1743, 2175, 2700
BstDSI CCRYGG 1 cut(s) 1805
BstF5I GGATG 6 cut(s) 1012, 1063, 1306, 1827, 2689, 2787
BstH2I RGCGCY 2 cut(s) 841, 2717
BstHHI GCGC 7 cut(s) 330, 480, 834, 840, 1102, 1762, 2716
BstMAI GTCTC 2 cut(s) 231, 781
BstNI CCWGG 4 cut(s) 334, 384, 1773, 2279
BstNSI RCATGY 2 cut(s) 556, 1085
BstSCI CCNGG 4 cut(s) 332, 382, 1771, 2277
BstSFI CTRYAG 4 cut(s) 282, 506, 1578, 2198
BstV1I GCAGC 6 cut(s) 1384, 1553, 1650, 1687, 2269, 2689
BstV2I GAAGAC 4 cut(s) 985, 1205, 1251, 2445
BstX2I RGATCY 7 cut(s) 802, 904, 1432, 1834, 1846, 2421, 2488
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 7 cut(s) 802, 904, 1432, 1834, 1846, 2421, 2488
BstZ17I GTATAC 1 cut(s) 1526
Bsu36I CCTNAGG 2 cut(s) 1536, 1902
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 6 cut(s) 503, 703, 1683, 2173, 2482, 2562
BtgI CCRYGG 1 cut(s) 1805
BtrI CACGTC 2 cut(s) 1769, 2679
BtsCI GGATG 6 cut(s) 1012, 1063, 1306, 1827, 2689, 2787
BtsI GCAGTG 3 cut(s) 171, 529, 1484
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 9 cut(s) 554, 558, 836, 1171, 1443, 1592, 1743, 2175, 2700
CfoI GCGC 7 cut(s) 330, 480, 834, 840, 1102, 1762, 2716
Cfr10I RCCGGY 1 cut(s) 2399
Cfr13I GGNCC 3 cut(s) 502, 1330, 2560
Csp6I GTAC 5 cut(s) 1456, 1625, 1826, 2190, 2630
CspCI CAANNNNNGTGG 2 cut(s) 2802, 2837
CviQI GTAC 5 cut(s) 1456, 1625, 1826, 2190, 2630
DraI TTTAAA 1 cut(s) 1317
DraIII CACNNNGTG 1 cut(s) 1709
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 701, 1681
Eam1104I CTCTTC 7 cut(s) 24, 57, 1341, 1455, 1788, 2062, 2842
EarI CTCTTC 7 cut(s) 24, 57, 1341, 1455, 1788, 2062, 2842
EciI GGCGGA 1 cut(s) 1672
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 5 cut(s) 1436, 2157, 2492, 2563, 2765
Eco24I GRGCYC 2 cut(s) 312, 1805
Eco31I GGTCTC 1 cut(s) 781
Eco32I GATATC 2 cut(s) 575, 2849
Eco47I GGWCC 1 cut(s) 1330
Eco47III AGCGCT 1 cut(s) 839
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 3 cut(s) 1251, 1398, 1436
Eco81I CCTNAGG 2 cut(s) 1536, 1902
Eco88I CYCGRG 1 cut(s) 1074
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 3 cut(s) 502, 1330, 2560
EcoRI GAATTC 3 cut(s) 1912, 1932, 2410
EcoRII CCWGG 4 cut(s) 332, 382, 1771, 2277
EcoRV GATATC 2 cut(s) 575, 2849
EcoT14I CCWWGG 5 cut(s) 1436, 2157, 2492, 2563, 2765
EcoT22I ATGCAT 1 cut(s) 2005
EcoT38I GRGCYC 2 cut(s) 312, 1805
ErhI CCWWGG 5 cut(s) 1436, 2157, 2492, 2563, 2765
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 3 cut(s) 1247, 1343, 2431
FbaI TGATCA 2 cut(s) 616, 642
FblI GTMKAC 3 cut(s) 531, 1525, 2531
Fnu4HI GCNGC 8 cut(s) 239, 293, 1398, 1542, 1664, 1676, 2283, 2703
FokI GGATG 6 cut(s) 999, 1070, 1313, 1834, 2696, 2794
FriOI GRGCYC 2 cut(s) 312, 1805
Fsp4HI GCNGC 8 cut(s) 239, 293, 1398, 1542, 1664, 1676, 2283, 2703
GlaI GCGC 7 cut(s) 329, 479, 833, 839, 1101, 1761, 2715
GluI GCNGC 8 cut(s) 239, 293, 1398, 1542, 1664, 1676, 2283, 2703
GsaI CCCAGC 1 cut(s) 1397
GsuI CTGGAG 3 cut(s) 316, 2142, 2247
HaeII RGCGCY 2 cut(s) 841, 2717
HaeIII GGCC 6 cut(s) 503, 703, 1683, 2173, 2482, 2562
HapII CCGG 2 cut(s) 1819, 2400
HhaI GCGC 7 cut(s) 330, 480, 834, 840, 1102, 1762, 2716
Hin6I GCGC 7 cut(s) 328, 478, 832, 838, 1100, 1760, 2714
HinP1I GCGC 7 cut(s) 328, 478, 832, 838, 1100, 1760, 2714
HincII GTYRAC 2 cut(s) 2077, 2383
HindII GTYRAC 2 cut(s) 2077, 2383
HindIII AAGCTT 2 cut(s) 1003, 1588
HpaI GTTAAC 1 cut(s) 2383
HpaII CCGG 2 cut(s) 1819, 2400
HphI GGTGA 6 cut(s) 38, 353, 652, 1631, 2042, 2252
Hpy166II GTNNAC 8 cut(s) 155, 532, 1458, 1526, 2077, 2383, 2532, 2792
Hpy8I GTNNAC 8 cut(s) 155, 532, 1458, 1526, 2077, 2383, 2532, 2792
HpyCH4III ACNGT 4 cut(s) 1211, 1462, 1530, 1858
HpyCH4IV ACGT 4 cut(s) 1768, 2678, 2752, 2794
HpySE526I ACGT 4 cut(s) 1768, 2678, 2752, 2794
HspAI GCGC 7 cut(s) 328, 478, 832, 838, 1100, 1760, 2714
KflI GGGWCCC 1 cut(s) 1330
KpnI GGTACC 2 cut(s) 1628, 1829
Ksp22I TGATCA 2 cut(s) 616, 642
KspAI GTTAAC 1 cut(s) 2383
LmnI GCTCC 7 cut(s) 307, 315, 335, 1117, 1450, 2153, 2866
Lsp1109I GCAGC 6 cut(s) 1384, 1553, 1650, 1687, 2269, 2689
LweI GCATC 2 cut(s) 1882, 2685
MaeII ACGT 4 cut(s) 1768, 2678, 2752, 2794
MaeIII GTNAC 3 cut(s) 33, 714, 812
MbiI CCGCTC 1 cut(s) 241
MflI RGATCY 7 cut(s) 802, 904, 1432, 1834, 1846, 2421, 2488
MhlI GDGCHC 2 cut(s) 312, 1805
MlsI TGGCCA 1 cut(s) 1683
MluNI TGGCCA 1 cut(s) 1683
MlyI GAGTC 4 cut(s) 218, 381, 733, 2453
MmeI TCCRAC 1 cut(s) 2602
Mox20I TGGCCA 1 cut(s) 1683
Mph1103I ATGCAT 1 cut(s) 2005
MscI TGGCCA 1 cut(s) 1683
MseI TTAA 6 cut(s) 747, 1254, 1316, 1554, 2045, 2382
MslI CAYNNNNRTG 1 cut(s) 1977
Msp20I TGGCCA 1 cut(s) 1683
MspA1I CMGCKG 1 cut(s) 1397
MspCI CTTAAG 1 cut(s) 2044
MspI CCGG 2 cut(s) 1819, 2400
MspR9I CCNGG 4 cut(s) 334, 384, 1773, 2279
Mva1269I GAATGC 1 cut(s) 2835
MvaI CCWGG 4 cut(s) 334, 384, 1773, 2279
NlaIV GGNNCC 7 cut(s) 906, 1331, 1332, 1626, 1827, 2155, 2423
NsiI ATGCAT 1 cut(s) 2005
NspI RCATGY 2 cut(s) 556, 1085
PaeI GCATGC 1 cut(s) 556
PctI GAATGC 1 cut(s) 2835
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 8 cut(s) 240, 294, 1399, 1543, 1665, 1677, 2284, 2704
PleI GAGTC 4 cut(s) 217, 381, 733, 2452
PpsI GAGTC 4 cut(s) 217, 381, 733, 2452
PpuMI RGGWCCY 1 cut(s) 1330
PshBI ATTAAT 1 cut(s) 747
PsiI TTATAA 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 1330
Psp6I CCWGG 4 cut(s) 332, 382, 1771, 2277
PspFI CCCAGC 1 cut(s) 1393
PspGI CCWGG 4 cut(s) 332, 382, 1771, 2277
PspN4I GGNNCC 7 cut(s) 906, 1331, 1332, 1626, 1827, 2155, 2423
PspPI GGNCC 3 cut(s) 502, 1330, 2560
PspPPI RGGWCCY 1 cut(s) 1330
PstI CTGCAG 3 cut(s) 286, 1582, 2202
PsuI RGATCY 7 cut(s) 802, 904, 1432, 1834, 1846, 2421, 2488
PvuII CAGCTG 1 cut(s) 1397
RsaI GTAC 5 cut(s) 1457, 1626, 1827, 2191, 2631
RsaNI GTAC 5 cut(s) 1456, 1625, 1826, 2190, 2630
RseI CAYNNNNRTG 1 cut(s) 1977
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 6 cut(s) 747, 1254, 1316, 1554, 2045, 2382
SatI GCNGC 8 cut(s) 239, 293, 1398, 1542, 1664, 1676, 2283, 2703
Sau96I GGNCC 3 cut(s) 502, 1330, 2560
SchI GAGTC 4 cut(s) 218, 381, 733, 2453
ScrFI CCNGG 4 cut(s) 334, 384, 1773, 2279
SduI GDGCHC 2 cut(s) 312, 1805
SfaNI GCATC 2 cut(s) 1882, 2685
SfcI CTRYAG 4 cut(s) 282, 506, 1578, 2198
SinI GGWCC 1 cut(s) 1330
SmiMI CAYNNNNRTG 1 cut(s) 1977
SmlI CTYRAG 2 cut(s) 1116, 2044
SmoI CTYRAG 2 cut(s) 1116, 2044
SphI GCATGC 1 cut(s) 556
SsiI CCGC 3 cut(s) 239, 293, 1657
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 332, 382, 1771, 2277
StyI CCWWGG 5 cut(s) 1436, 2157, 2492, 2563, 2765
TaaI ACNGT 4 cut(s) 1211, 1462, 1530, 1858
TaiI ACGT 4 cut(s) 1771, 2681, 2755, 2797
TaqI TCGA 6 cut(s) 493, 929, 1876, 1916, 2050, 2610
TatI WGTACW 2 cut(s) 1455, 2629
TauI GCSGC 2 cut(s) 241, 295
Tru1I TTAA 6 cut(s) 747, 1254, 1316, 1554, 2045, 2382
Tru9I TTAA 6 cut(s) 747, 1254, 1316, 1554, 2045, 2382
TseI GCWGC 6 cut(s) 1397, 1541, 1663, 1675, 2282, 2702
TspGWI ACGGA 2 cut(s) 2207, 2338
Vha464I CTTAAG 1 cut(s) 2044
VpaK11BI GGWCC 1 cut(s) 1330
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 6 cut(s) 91, 1199, 1912, 1932, 2302, 2410
XceI RCATGY 2 cut(s) 556, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 2006
XmaJI CCTAGG 1 cut(s) 2492
XmiI GTMKAC 3 cut(s) 531, 1525, 2531
Zsp2I ATGCAT 1 cut(s) 2005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.