Rh5AG060400

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007472
Physical Location & Seq
Forward (+)
5156839 .. 5165453
8615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG060400.1

Sequence Viewer

Length: 2586 bp
ATGGCCCTAGGAGGGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGGAATAATGAAAAACAGCATCCATGTTTTTGGGGATTCAACGTATCGTCTGGACTATACAGTTCTTGCCTCGGCATGCTGAACCTAAGATGTCTTGGCATTGTATTTGATCTTGATGAAACGCTTATTGTTGCAAATACAATGCGTTCATTCGAGGATCGAATTGAGGGCCTACAGAGGAAAATAAACTGCGAGGTGGACCCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATATCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAATTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGATTGTTCCAGCCTTGTCTGACAACCATCAACCTATCATCCGGCCACTTATACGATTACAGGAGAAAAATATTATCCTGACTCGCATTAATCCGCAGATTCGCGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTAGGAGCTACTTGACGGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTCTGCACAATGGCCGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTCGATCCAGAATCAAATTTGATAAACGCAAATAAATTACTGGACCGCATCGTTTGTGTCAAGTCTGGTTTAAGGAAGTCGCTGTTCAATGTCTTCCAAGAAAGTTTATGCCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCATGTTGTTCCCGCATTTGCACCTTACTATGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTATGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGACAGTTTACTACAAAAGATTCCTGAAATTTTTTACGAAGATAATATTAAAGATATCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATACTTCTGCTTCAAATGGGAACAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAAAGAAGACTGAAGGAAGCAACCTCAGCTGCTCCAACAGTCTCTTCAGCAGTCAATAACATTGATCCGAGGCTTGCTTCTCTTCAGTACACAGTGCCTCCTTCCAGCACAGTTTCACTACCAACAGTTCAACCATCAATGATGCCTTTTCATAATGTGCAGTTCCCTCAGTCAGCTTCACTAGTTAAACCTTTGGGTCATGTTGGCCCTGCAGATTTAGGTTTGCATAGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCAGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGATACAAGAGAGTCTGTACCAAGCGAACCTCCATTTCCTGTAAGACCCCAAGTACAAGTCTCTGTCCCACGGGTGCAATCACGCGCAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGAAAACTGAGCCGGATGGGACCCAAAGAACTTCCTTTAAATTCAGAACCCATGCAGATTGAGAAGCATCGACCTCATCATTCAGCTTTTTTCCCTAAAGTTGAGAGTTCTATGCCATCTGATAGAATTCTTCAAGAAAATCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTCAACCAAGCAATATCTGGTTACCATTCATTCTCAGGTGAGGAGCCTCCCTTAAATCGATCGTCTTCCAGCAACAGGGATTTTGACTTTGAATCTGGGCGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAGTGTGGAACCAAGGTGGAGTTCAGGCCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCTTGGTTCGCGGGAGAGAAAATTGGTGAAGGAACTGGTAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAAAAGTTAGCCAATATATACATTTCCCGTGGCAAGCCTGATTCTCTGCCCATTCAAGGGGATGCAAACAAGTTTTCTAATGTTAATAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTTCCAAAAGAGGACTCTCTTTCTTCTTCAACTTCATCAGAGCCATCTAGGCCTCTAGACCCTAGGCTGGAAAGTTCTAAGAAGTCTGTGAGTTCAGTGTCTGCACTCAAGGAACTGTGTACAATGGAGGGTCTTGGTGTAGTTTTTCAACCACGGCCTCCACCACCTAATTCAATGGAGAAAGATGAAGTGCATGTACAGGTTGAAATAGATGGAGAGGTCTTGGGGAAGGGAATTGGCTTAACTTGGGATGAGGCTAAGATGGAGGCTGCTGAAAAGGCCCTTGGAAGTCTAAGATCAACACTATATGGTCAGAAACGTCAAGGTTCTCCAAGGCCTTTACAAGGGATGCCAAGCAAACGCCTGAAGCAGGAATTTCCACAAGTTCTGCAGCGGATGCCCTCTTCTGCTAGATATCCGAAAAACGCTCCTCCTGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

861

Amino Acids

96.58

Weight (kDa)

6.32

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 154 - 261 1.8e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 1336
AccII CGCG 3 cut(s) 474, 1482, 1937
AciI CCGC 7 cut(s) 464, 658, 804, 1369, 1937, 1997, 2536
AclWI GGATC 5 cut(s) 210, 522, 611, 1139, 1349
AcoI YGGCCR 3 cut(s) 413, 576, 1393
AcsI RAATTY 7 cut(s) 628, 911, 945, 1558, 1644, 2122, 2516
AcuI CTGAAG 7 cut(s) 329, 855, 1095, 1110, 1112, 1148, 2528
AfaI GTAC 5 cut(s) 1169, 1416, 1452, 2263, 2340
AhlI ACTAGT 1 cut(s) 1261
AjnI CCWGG 2 cut(s) 1395, 1989
AjuI GAANNNNNNNTTGG 6 cut(s) 1108, 1140, 1862, 1894, 2409, 2441
Alw26I GTCTC 3 cut(s) 493, 1126, 1462
AlwI GGATC 5 cut(s) 210, 522, 611, 1139, 1349
AlwNI CAGNNNCTG 2 cut(s) 1073, 2243
Ama87I CYCGRG 1 cut(s) 786
ApeKI GCWGC 7 cut(s) 22, 885, 1109, 1387, 1994, 2411, 2533
ApoI RAATTY 7 cut(s) 628, 911, 945, 1558, 1644, 2122, 2516
AseI ATTAAT 1 cut(s) 459
AspA2I CCTAGG 2 cut(s) 7, 2204
AspLEI GCGC 2 cut(s) 546, 1484
AspS9I GGNCC 7 cut(s) 4, 214, 244, 655, 1286, 1538, 2422
AsuHPI GGTGA 4 cut(s) 364, 754, 1754, 1964
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 3 cut(s) 244, 655, 1538
AvrII CCTAGG 2 cut(s) 7, 2204
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BalI TGGCCA 1 cut(s) 1395
BanI GGYRCC 1 cut(s) 1336
BanII GRGCYC 1 cut(s) 1517
BarI GAAGNNNNNNTAC 2 cut(s) 2322, 2354
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 3 cut(s) 697, 1093, 1761
BbvCI CCTCAGC 1 cut(s) 1105
BbvI GCAGC 7 cut(s) 9, 897, 1096, 1399, 1981, 2398, 2545
BceAI ACGGC 2 cut(s) 549, 2312
BciT130I CCWGG 2 cut(s) 1397, 1991
BciVI GTATCC 1 cut(s) 1393
BclI TGATCA 2 cut(s) 328, 354
BcoDI GTCTC 3 cut(s) 493, 1126, 1462
BcuI ACTAGT 1 cut(s) 1261
BfaI CTAG 8 cut(s) 8, 1001, 1262, 1320, 2190, 2198, 2205, 2553
BfmI CTRYAG 5 cut(s) 218, 883, 1290, 1910, 2531
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 1 cut(s) 1393
BglI GCCNNNNNGGC 1 cut(s) 2191
BisI GCNGC 7 cut(s) 23, 886, 1110, 1388, 1995, 2412, 2534
BlnI CCTAGG 2 cut(s) 7, 2204
BlsI GCNGC 7 cut(s) 24, 887, 1111, 1389, 1996, 2413, 2535
Bme1390I CCNGG 2 cut(s) 1397, 1991
Bme18I GGWCC 3 cut(s) 244, 655, 1538
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 7 cut(s) 4, 214, 244, 655, 1286, 1538, 2422
BmiI GGNNCC 7 cut(s) 246, 1338, 1539, 1540, 1749, 1867, 1896
BmrFI CCNGG 2 cut(s) 1397, 1991
BmsI GCATC 8 cut(s) 73, 669, 1060, 1212, 1594, 2062, 2481, 2529
BpiI GAAGAC 3 cut(s) 697, 1093, 1761
BpmI CTGGAG 1 cut(s) 1854
Bpu10I CCTNAGC 1 cut(s) 1105
BpuEI CTTGAG 2 cut(s) 813, 2234
Bsa29I ATCGAT 1 cut(s) 1762
BsaI GGTCTC 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 1162, 1192
Bse1I ACTGG 3 cut(s) 657, 1496, 1966
Bse3DI GCAATG 1 cut(s) 1860
BseBI CCWGG 2 cut(s) 1397, 1991
BseCI ATCGAT 1 cut(s) 1762
BseMI GCAATG 1 cut(s) 1860
BseMII CTCAG 7 cut(s) 360, 377, 1119, 1262, 1517, 1752, 2150
BseNI ACTGG 3 cut(s) 657, 1496, 1966
BseRI GAGGAG 4 cut(s) 32, 816, 1760, 2562
BseXI GCAGC 7 cut(s) 9, 897, 1096, 1399, 1981, 2398, 2545
BseYI CCCAGC 1 cut(s) 1898
BsgI GTGCAG 3 cut(s) 553, 1259, 2229
Bsh1236I CGCG 3 cut(s) 474, 1482, 1937
Bsh1285I CGRYCG 1 cut(s) 1766
BshNI GGYRCC 1 cut(s) 1336
BshVI ATCGAT 1 cut(s) 1762
BsiEI CGRYCG 1 cut(s) 1766
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 2 cut(s) 412, 1531
BslFI GGGAC 4 cut(s) 836, 1448, 1551, 2146
BsmAI GTCTC 3 cut(s) 493, 1126, 1462
BsmFI GGGAC 4 cut(s) 836, 1448, 1551, 2146
Bso31I GGTCTC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 1517
Bsp1407I TGTACA 2 cut(s) 2261, 2338
Bsp68I TCGCGA 1 cut(s) 474
BspACI CCGC 7 cut(s) 464, 658, 804, 1369, 1937, 1997, 2536
BspCNI CTCAG 7 cut(s) 361, 376, 1118, 1261, 1518, 1751, 2149
BspDI ATCGAT 1 cut(s) 1762
BspFNI CGCG 3 cut(s) 474, 1482, 1937
BspLI GGNNCC 7 cut(s) 246, 1338, 1539, 1540, 1749, 1867, 1896
BspMAI CTGCAG 4 cut(s) 887, 1294, 1914, 2535
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 5 cut(s) 210, 522, 611, 1139, 1349
BspT107I GGYRCC 1 cut(s) 1336
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 1860
BsrGI TGTACA 2 cut(s) 2261, 2338
BsrI ACTGG 3 cut(s) 657, 1496, 1966
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 5 cut(s) 7, 1869, 2204, 2425, 2474
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 1397, 1991
Bst4CI ACNGT 7 cut(s) 107, 923, 1120, 1174, 1192, 1207, 2259
Bst6I CTCTTC 5 cut(s) 982, 1129, 1167, 1500, 2551
BstAPI GCANNNNNTGC 2 cut(s) 845, 2539
BstAUI TGTACA 2 cut(s) 2261, 2338
BstC8I GCNNGC 9 cut(s) 122, 270, 548, 883, 1155, 1486, 1806, 1887, 2045
BstDSI CCRYGG 3 cut(s) 1466, 2038, 2294
BstEII GGTNACC 1 cut(s) 1724
BstENI CCTNNNNNAGG 2 cut(s) 2484, 2510
BstFNI CGCG 3 cut(s) 474, 1482, 1937
BstHHI GCGC 2 cut(s) 546, 1484
BstMAI GTCTC 3 cut(s) 493, 1126, 1462
BstMCI CGRYCG 1 cut(s) 1766
BstMWI GCNNNNNNNGC 7 cut(s) 830, 845, 1106, 1934, 2191, 2420, 2539
BstNI CCWGG 2 cut(s) 1397, 1991
BstNSI RCATGY 3 cut(s) 124, 797, 2339
BstPI GGTNACC 1 cut(s) 1724
BstSCI CCNGG 2 cut(s) 1395, 1989
BstSFI CTRYAG 5 cut(s) 218, 883, 1290, 1910, 2531
BstUI CGCG 3 cut(s) 474, 1482, 1937
BstV1I GCAGC 7 cut(s) 9, 897, 1096, 1399, 1981, 2398, 2545
BstV2I GAAGAC 3 cut(s) 697, 1093, 1761
BstX2I RGATCY 2 cut(s) 514, 1354
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 2 cut(s) 514, 1354
Bsu15I ATCGAT 1 cut(s) 1762
BsuI GTATCC 1 cut(s) 1393
BsuTUI ATCGAT 1 cut(s) 1762
BtgI CCRYGG 3 cut(s) 1466, 2038, 2294
BtsIMutI CAGTG 3 cut(s) 1179, 1503, 2244
BtuMI TCGCGA 1 cut(s) 474
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 9 cut(s) 122, 270, 548, 883, 1155, 1486, 1806, 1887, 2045
CaiI CAGNNNCTG 2 cut(s) 1073, 2243
CfoI GCGC 2 cut(s) 546, 1484
Cfr13I GGNCC 7 cut(s) 4, 214, 244, 655, 1286, 1538, 2422
ClaI ATCGAT 1 cut(s) 1762
CseI GACGC 1 cut(s) 877
Csp6I GTAC 5 cut(s) 1168, 1415, 1451, 2262, 2339
CviQI GTAC 5 cut(s) 1168, 1415, 1451, 2262, 2339
DraI TTTAAA 1 cut(s) 1557
EaeI YGGCCR 3 cut(s) 413, 576, 1393
Eam1104I CTCTTC 5 cut(s) 982, 1129, 1167, 1500, 2551
EarI CTCTTC 5 cut(s) 982, 1129, 1167, 1500, 2551
EciI GGCGGA 1 cut(s) 1384
Eco130I CCWWGG 5 cut(s) 7, 1869, 2204, 2425, 2474
Eco147I AGGCCT 2 cut(s) 2194, 2479
Eco24I GRGCYC 1 cut(s) 1517
Eco31I GGTCTC 1 cut(s) 493
Eco32I GATATC 3 cut(s) 287, 973, 2558
Eco47I GGWCC 3 cut(s) 244, 655, 1538
Eco57I CTGAAG 7 cut(s) 329, 855, 1095, 1110, 1112, 1148, 2528
Eco88I CYCGRG 1 cut(s) 786
Eco91I GGTNACC 1 cut(s) 1724
EcoNI CCTNNNNNAGG 2 cut(s) 2484, 2510
EcoO109I RGGNCCY 3 cut(s) 214, 1538, 2422
EcoO65I GGTNACC 1 cut(s) 1724
EcoRI GAATTC 2 cut(s) 1644, 2122
EcoRII CCWGG 2 cut(s) 1395, 1989
EcoRV GATATC 3 cut(s) 287, 973, 2558
EcoT14I CCWWGG 5 cut(s) 7, 1869, 2204, 2425, 2474
EcoT38I GRGCYC 1 cut(s) 1517
ErhI CCWWGG 5 cut(s) 7, 1869, 2204, 2425, 2474
FaqI GGGAC 4 cut(s) 836, 1448, 1551, 2146
FauI CCCGC 2 cut(s) 811, 1930
FbaI TGATCA 2 cut(s) 328, 354
Fnu4HI GCNGC 7 cut(s) 23, 886, 1110, 1388, 1995, 2412, 2534
FriOI GRGCYC 1 cut(s) 1517
Fsp4HI GCNGC 7 cut(s) 23, 886, 1110, 1388, 1995, 2412, 2534
FspBI CTAG 8 cut(s) 8, 1001, 1262, 1320, 2190, 2198, 2205, 2553
GlaI GCGC 2 cut(s) 545, 1483
GluI GCNGC 7 cut(s) 23, 886, 1110, 1388, 1995, 2412, 2534
GsaI CCCAGC 1 cut(s) 1902
GsuI CTGGAG 1 cut(s) 1854
HapII CCGG 2 cut(s) 412, 1531
HgaI GACGC 1 cut(s) 877
HhaI GCGC 2 cut(s) 546, 1484
Hin6I GCGC 2 cut(s) 544, 1482
HinP1I GCGC 2 cut(s) 544, 1482
HpaII CCGG 2 cut(s) 412, 1531
HphI GGTGA 4 cut(s) 364, 754, 1754, 1964
Hpy166II GTNNAC 4 cut(s) 244, 926, 1170, 2262
Hpy8I GTNNAC 4 cut(s) 244, 926, 1170, 2262
HpyAV CCTTC 6 cut(s) 1087, 1191, 1322, 1949, 1968, 2365
HpyCH4III ACNGT 7 cut(s) 107, 923, 1120, 1174, 1192, 1207, 2259
HpyCH4IV ACGT 2 cut(s) 87, 2461
HpyF10VI GCNNNNNNNGC 7 cut(s) 830, 845, 1106, 1934, 2191, 2420, 2539
HpySE526I ACGT 2 cut(s) 87, 2461
HspAI GCGC 2 cut(s) 544, 1482
KflI GGGWCCC 1 cut(s) 1538
Ksp22I TGATCA 2 cut(s) 328, 354
LmnI GCTCC 6 cut(s) 19, 522, 829, 1117, 1747, 2575
Lsp1109I GCAGC 7 cut(s) 9, 897, 1096, 1399, 1981, 2398, 2545
LweI GCATC 8 cut(s) 73, 669, 1060, 1212, 1594, 2062, 2481, 2529
MaeI CTAG 8 cut(s) 8, 1001, 1262, 1320, 2190, 2198, 2205, 2553
MaeII ACGT 2 cut(s) 87, 2461
MaeIII GTNAC 1 cut(s) 1724
MflI RGATCY 2 cut(s) 514, 1354
MhlI GDGCHC 1 cut(s) 1517
MlsI TGGCCA 1 cut(s) 1395
MluNI TGGCCA 1 cut(s) 1395
MlyI GAGTC 4 cut(s) 445, 1418, 2128, 2150
MmeI TCCRAC 1 cut(s) 1139
Mox20I TGGCCA 1 cut(s) 1395
MscI TGGCCA 1 cut(s) 1395
MseI TTAA 8 cut(s) 459, 683, 966, 1266, 1556, 1757, 2094, 2384
MslI CAYNNNNRTG 1 cut(s) 1689
Msp20I TGGCCA 1 cut(s) 1395
MspA1I CMGCKG 2 cut(s) 1109, 2536
MspI CCGG 2 cut(s) 412, 1531
MspR9I CCNGG 2 cut(s) 1397, 1991
MvaI CCWGG 2 cut(s) 1397, 1991
MvnI CGCG 3 cut(s) 474, 1482, 1937
MwoI GCNNNNNNNGC 7 cut(s) 830, 845, 1106, 1934, 2191, 2420, 2539
NlaIV GGNNCC 7 cut(s) 246, 1338, 1539, 1540, 1749, 1867, 1896
NmeAIII GCCGAG 1 cut(s) 96
NruI TCGCGA 1 cut(s) 474
NspI RCATGY 3 cut(s) 124, 797, 2339
PaeI GCATGC 1 cut(s) 124
PceI AGGCCT 2 cut(s) 2194, 2479
PfeI GAWTC 8 cut(s) 81, 469, 623, 937, 1343, 1704, 1796, 2051
PkrI GCNGC 7 cut(s) 24, 887, 1111, 1389, 1996, 2413, 2535
Ple19I CGATCG 1 cut(s) 1766
PleI GAGTC 4 cut(s) 445, 1417, 2128, 2150
PpsI GAGTC 4 cut(s) 445, 1417, 2128, 2150
PpuMI RGGWCCY 1 cut(s) 1538
PshBI ATTAAT 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 1538
Psp6I CCWGG 2 cut(s) 1395, 1989
PspEI GGTNACC 1 cut(s) 1724
PspFI CCCAGC 1 cut(s) 1898
PspGI CCWGG 2 cut(s) 1395, 1989
PspN4I GGNNCC 7 cut(s) 246, 1338, 1539, 1540, 1749, 1867, 1896
PspPI GGNCC 7 cut(s) 4, 214, 244, 655, 1286, 1538, 2422
PspPPI RGGWCCY 1 cut(s) 1538
PstI CTGCAG 4 cut(s) 887, 1294, 1914, 2535
PstNI CAGNNNCTG 2 cut(s) 1073, 2243
PsuI RGATCY 2 cut(s) 514, 1354
PvuI CGATCG 1 cut(s) 1766
PvuII CAGCTG 1 cut(s) 1109
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 5 cut(s) 1169, 1416, 1452, 2263, 2340
RsaNI GTAC 5 cut(s) 1168, 1415, 1451, 2262, 2339
RseI CAYNNNNRTG 1 cut(s) 1689
SaqAI TTAA 8 cut(s) 459, 683, 966, 1266, 1556, 1757, 2094, 2384
SatI GCNGC 7 cut(s) 23, 886, 1110, 1388, 1995, 2412, 2534
Sau96I GGNCC 7 cut(s) 4, 214, 244, 655, 1286, 1538, 2422
SchI GAGTC 4 cut(s) 445, 1418, 2128, 2150
ScrFI CCNGG 2 cut(s) 1397, 1991
SduI GDGCHC 1 cut(s) 1517
SfaNI GCATC 8 cut(s) 73, 669, 1060, 1212, 1594, 2062, 2481, 2529
SfcI CTRYAG 5 cut(s) 218, 883, 1290, 1910, 2531
SinI GGWCC 3 cut(s) 244, 655, 1538
SmiMI CAYNNNNRTG 1 cut(s) 1689
SmlI CTYRAG 2 cut(s) 828, 2249
SmoI CTYRAG 2 cut(s) 828, 2249
SpeI ACTAGT 1 cut(s) 1261
SphI GCATGC 1 cut(s) 124
SseBI AGGCCT 2 cut(s) 2194, 2479
SsiI CCGC 7 cut(s) 464, 658, 804, 1369, 1937, 1997, 2536
SspI AATATT 2 cut(s) 442, 964
SspMI CTAG 8 cut(s) 8, 1001, 1262, 1320, 2190, 2198, 2205, 2553
StuI AGGCCT 2 cut(s) 2194, 2479
StyD4I CCNGG 2 cut(s) 1395, 1989
StyI CCWWGG 5 cut(s) 7, 1869, 2204, 2425, 2474
TaaI ACNGT 7 cut(s) 107, 923, 1120, 1174, 1192, 1207, 2259
TaiI ACGT 2 cut(s) 90, 2464
TaqI TCGA 6 cut(s) 44, 198, 205, 615, 1588, 1762
TatI WGTACW 4 cut(s) 1167, 1450, 2261, 2338
TfiI GAWTC 8 cut(s) 81, 469, 623, 937, 1343, 1704, 1796, 2051
Tru1I TTAA 8 cut(s) 459, 683, 966, 1266, 1556, 1757, 2094, 2384
Tru9I TTAA 8 cut(s) 459, 683, 966, 1266, 1556, 1757, 2094, 2384
TscAI CASTG 3 cut(s) 1179, 1503, 2244
TseI GCWGC 7 cut(s) 22, 885, 1109, 1387, 1994, 2411, 2533
TspGWI ACGGA 1 cut(s) 1919
TspRI CASTG 3 cut(s) 1179, 1503, 2244
VpaK11BI GGWCC 3 cut(s) 244, 655, 1538
VspI ATTAAT 1 cut(s) 459
XagI CCTNNNNNAGG 2 cut(s) 2484, 2510
XapI RAATTY 7 cut(s) 628, 911, 945, 1558, 1644, 2122, 2516
XbaI TCTAGA 1 cut(s) 2197
XceI RCATGY 3 cut(s) 124, 797, 2339
XcmI CCANNNNNNNNNTGG 1 cut(s) 1718
XmaJI CCTAGG 2 cut(s) 7, 2204
XspI CTAG 8 cut(s) 8, 1001, 1262, 1320, 2190, 2198, 2205, 2553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.