RLG00000031525

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007472
Physical Location & Seq
Forward (+)
5913032 .. 5920510
7479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031525

Sequence Viewer

Length: 2799 bp
ATGCTTAAGCTTGTGTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGATTTGCTTCAAAATGGAGTCAAAGTCTTCTTCTTCTGTTCAGGACACATCGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGACTGCAGTTATGGCCCTAGGAGGGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGGAATGATGAAAAACAGCATCCATGTTTTTGGGGATTCAACGTATCGTCTGGACTATACAGTTCTTGCCTTGGCATGCTCAACCTAAGATGTCTTGGCATTGTCTTTGATCTTGATGAAACGCTTATTGTTGCAAATACAATGCGTTCATTTGAGGATCGAATCGAGGGCCTACAGAGAAAAATAAACTGTGAGGTGGACCCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATATCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAGTTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGGTTGTTCCAGCCTTGTCTGACAACCATCAACCTATCATCCGGCCACTTATACGATTGCAGGAGAAAAATATTATCCTGACTCGCATTAATCCGCAGATTCGCGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTAGGAGCTACTTGACTGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTCTGCACAATGGCCGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTCGATCCAGAATCAAATTTGATAAACGCAAATAAATTACTGGACCGCATTGTTTGTGTCAAGTCTGGGTTAAGGAAGTCGCTGTTCAATGTCTTCCAAGAAAGCTTATGCCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCACGTTGTTCCCGCATTTGCACCTTACTATGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTATGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGACAGTTTACTACAAAAGATTCCTGAAATTTTTTACGAAGATAATATTAAAGATATCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATACTTCTGCTTCAAATGGAAACAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAAAGAAGACTGAAGGAAGCTATCCCAGCTGCTCCAACAGTCTCTTCAGCAGTCAATAACATCGATCCGAGGCTTGCTTCTCTACAGTACACAGTGCCTCCTTCCAGCACAGTTTCACTACCAACAGCTCAACCATCAATGATGCCTTTTCATAATGTGCAGTTCCCTCAGTCAGCTTCACTAGTTAAACCTTTGGGTCATATTGGCCCTGCAGATTTAGGTTTGCATAGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCAGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGACACAAGAGAGTCTGTACCAAGCGAACCTCCGTTTCCTGTACGACCCCAAGTACAAGTCTCTGTCCCACGGGTGCAATCACGCGCAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGAAATCTGAGCCGGATGGGACCCAAAGAACTTCCTTTAAATTCAGAACCCATGCAGATTGAGAAGCATCGACCTCATCATTCAGCCTTTTTCCCTAAAGTTGAGAGTTCTATGCCATCTGATAGAATTCTTCAAGAAAATCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTCAACCAAGCAATGTCTGGTTACCATTCATTCTCAGGTGAGGAGCCTCCCTTAAATCGATCATCTTCCAGCAACAGGGATTTTGACTTTGAATCTGGACGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAGTGTGGAACCAAGGTGGAGTTCAGGCCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCTTGGTTCGCAGGAGAGAAAATTGGTGAAGGAACTGGGAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAAAAGTTAGCCAATATATACATTTCCCGTGGCAAGCCTGATTCTCTGCCCATTCATGGGGATGCAAGCAAGTTTTCGAATGTTAATAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTTCCAAAAGAGGACTCTCTTTCATCTTCAACTTCATCAGAGCCATCTAGGCCTCTAGACCCTAGGCTGGAAAGCTCTAAGAAGTCCGTGAGTTCAGTGTCTGCACTCAAGGAACTGTGTACAATGGAGGGTCTTGGTGTAGTTTTTCAACCACGGCCTCCACCACCTAATTCAATGGAGAAAGATGAAGTGCATGTACAGGCTGCTGAAAAGGCCCTCGGAAGTCTAAGATCAACACTATATGGTCAGAAACGTCAAGGTTCTCCAAGGCCTTTACAAGGGATGCCAAGCAAACGCCTGAAGCAGGAAATTCCACAAGTTCTGCAGCGGATGCCCTCTTCTGCTAGATATCCGAAAAACGCTCCTCCTGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

933

Amino Acids

104.56

Weight (kDa)

6.34

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 247 - 354 2e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 1615
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 51
AccII CGCG 2 cut(s) 753, 1761
AciI CCGC 7 cut(s) 230, 743, 937, 1083, 1648, 2276, 2749
AclWI GGATC 5 cut(s) 489, 801, 890, 1418, 1628
AcoI YGGCCR 3 cut(s) 692, 855, 1672
AcsI RAATTY 7 cut(s) 907, 1190, 1224, 1837, 1923, 2401, 2730
AcuI CTGAAG 6 cut(s) 608, 1134, 1374, 1389, 1391, 2741
AfaI GTAC 6 cut(s) 1448, 1695, 1719, 1731, 2542, 2619
AflII CTTAAG 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 1540
AjnI CCWGG 2 cut(s) 1674, 2268
AjuI GAANNNNNNNTTGG 6 cut(s) 18, 50, 1387, 1419, 2141, 2173
Alw21I GWGCWC 1 cut(s) 1074
Alw26I GTCTC 3 cut(s) 772, 1405, 1741
Alw44I GTGCAC 1 cut(s) 1070
AlwI GGATC 5 cut(s) 489, 801, 890, 1418, 1628
AlwNI CAGNNNCTG 2 cut(s) 1352, 2522
Ama87I CYCGRG 1 cut(s) 1065
ApaLI GTGCAC 1 cut(s) 1070
ApeKI GCWGC 7 cut(s) 301, 1164, 1388, 1666, 2273, 2624, 2746
ApoI RAATTY 7 cut(s) 907, 1190, 1224, 1837, 1923, 2401, 2730
AseI ATTAAT 1 cut(s) 738
AspA2I CCTAGG 2 cut(s) 286, 2483
AspLEI GCGC 2 cut(s) 825, 1763
AspS9I GGNCC 7 cut(s) 283, 493, 523, 934, 1565, 1817, 2635
AsuHPI GGTGA 4 cut(s) 643, 1033, 2033, 2243
AsuII TTCGAA 1 cut(s) 2366
AvaI CYCGRG 1 cut(s) 1065
AvaII GGWCC 3 cut(s) 523, 934, 1817
AvrII CCTAGG 2 cut(s) 286, 2483
BaeGI GKGCMC 1 cut(s) 1074
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 1674
BanI GGYRCC 1 cut(s) 1615
BanII GRGCYC 1 cut(s) 1796
BarI GAAGNNNNNNTAC 2 cut(s) 2601, 2633
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 3 cut(s) 195, 976, 1372
Bbv12I GWGCWC 1 cut(s) 1074
BbvI GCAGC 7 cut(s) 288, 1176, 1375, 1678, 2260, 2611, 2758
BccI CCATC 8 cut(s) 684, 1006, 1011, 1331, 1501, 1807, 1921, 2473
BceAI ACGGC 1 cut(s) 2591
BciT130I CCWGG 2 cut(s) 1676, 2270
BclI TGATCA 2 cut(s) 607, 633
BcoDI GTCTC 3 cut(s) 772, 1405, 1741
BcuI ACTAGT 1 cut(s) 1540
BfaI CTAG 8 cut(s) 287, 1280, 1541, 1599, 2469, 2477, 2484, 2766
BfmI CTRYAG 7 cut(s) 273, 497, 1162, 1442, 1569, 2189, 2744
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 790
BglI GCCNNNNNGGC 1 cut(s) 2470
BisI GCNGC 8 cut(s) 230, 302, 1165, 1389, 1667, 2274, 2625, 2747
BlnI CCTAGG 2 cut(s) 286, 2483
BlsI GCNGC 8 cut(s) 231, 303, 1166, 1390, 1668, 2275, 2626, 2748
Bme1390I CCNGG 2 cut(s) 1676, 2270
Bme18I GGWCC 3 cut(s) 523, 934, 1817
BmeT110I CYCGRG 1 cut(s) 1065
BmgT120I GGNCC 7 cut(s) 283, 493, 523, 934, 1565, 1817, 2635
BmiI GGNNCC 7 cut(s) 525, 1617, 1818, 1819, 2028, 2146, 2175
BmrFI CCNGG 2 cut(s) 1676, 2270
BmrI ACTGGG 1 cut(s) 2250
BmsI GCATC 7 cut(s) 352, 1339, 1491, 1873, 2341, 2694, 2742
BmuI ACTGGG 1 cut(s) 2250
BpiI GAAGAC 3 cut(s) 195, 976, 1372
BpmI CTGGAG 1 cut(s) 2133
Bpu14I TTCGAA 1 cut(s) 2366
BpuEI CTTGAG 2 cut(s) 1092, 2513
Bsa29I ATCGAT 2 cut(s) 1422, 2041
BsaI GGTCTC 1 cut(s) 772
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1441, 1471
Bse1I ACTGG 4 cut(s) 126, 936, 1775, 2245
Bse3DI GCAATG 2 cut(s) 2001, 2139
BseBI CCWGG 2 cut(s) 1676, 2270
BseCI ATCGAT 2 cut(s) 1422, 2041
BseMI GCAATG 2 cut(s) 2001, 2139
BseMII CTCAG 6 cut(s) 639, 656, 1541, 1796, 2031, 2429
BseNI ACTGG 4 cut(s) 126, 936, 1775, 2245
BseRI GAGGAG 4 cut(s) 311, 1095, 2039, 2775
BseSI GKGCMC 1 cut(s) 1074
BseXI GCAGC 7 cut(s) 288, 1176, 1375, 1678, 2260, 2611, 2758
BseYI CCCAGC 2 cut(s) 1384, 2177
BsgI GTGCAG 3 cut(s) 832, 1538, 2508
Bsh1236I CGCG 2 cut(s) 753, 1761
BshNI GGYRCC 1 cut(s) 1615
BshVI ATCGAT 2 cut(s) 1422, 2041
BsiHKAI GWGCWC 1 cut(s) 1074
BsiHKCI CYCGRG 1 cut(s) 1065
BsiSI CCGG 2 cut(s) 691, 1810
BslFI GGGAC 4 cut(s) 1115, 1727, 1830, 2425
BsmAI GTCTC 3 cut(s) 772, 1405, 1741
BsmFI GGGAC 4 cut(s) 1115, 1727, 1830, 2425
Bso31I GGTCTC 1 cut(s) 772
BsoBI CYCGRG 1 cut(s) 1065
Bsp119I TTCGAA 1 cut(s) 2366
Bsp1286I GDGCHC 2 cut(s) 1074, 1796
Bsp1407I TGTACA 2 cut(s) 2540, 2617
Bsp68I TCGCGA 1 cut(s) 753
BspACI CCGC 7 cut(s) 230, 743, 937, 1083, 1648, 2276, 2749
BspCNI CTCAG 6 cut(s) 640, 655, 1540, 1797, 2030, 2428
BspDI ATCGAT 2 cut(s) 1422, 2041
BspFNI CGCG 2 cut(s) 753, 1761
BspLI GGNNCC 7 cut(s) 525, 1617, 1818, 1819, 2028, 2146, 2175
BspMAI CTGCAG 5 cut(s) 277, 1166, 1573, 2193, 2748
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 5 cut(s) 489, 801, 890, 1418, 1628
BspT104I TTCGAA 1 cut(s) 2366
BspT107I GGYRCC 1 cut(s) 1615
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 2001, 2139
BsrGI TGTACA 2 cut(s) 2540, 2617
BsrI ACTGG 4 cut(s) 126, 936, 1775, 2245
BssNAI GTATAC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 5 cut(s) 286, 394, 2148, 2483, 2687
Bst1107I GTATAC 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 1676, 2270
Bst4CI ACNGT 8 cut(s) 386, 515, 1202, 1399, 1446, 1453, 1471, 2538
Bst6I CTCTTC 7 cut(s) 21, 54, 253, 1261, 1408, 1779, 2764
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1124, 2752
BstAUI TGTACA 2 cut(s) 2540, 2617
BstBI TTCGAA 1 cut(s) 2366
BstC8I GCNNGC 9 cut(s) 401, 549, 827, 1162, 1434, 1765, 2166, 2324, 2356
BstDSI CCRYGG 3 cut(s) 1745, 2317, 2573
BstEII GGTNACC 1 cut(s) 2003
BstENI CCTNNNNNAGG 2 cut(s) 2697, 2723
BstFNI CGCG 2 cut(s) 753, 1761
BstHHI GCGC 2 cut(s) 825, 1763
BstMAI GTCTC 3 cut(s) 772, 1405, 1741
BstMWI GCNNNNNNNGC 8 cut(s) 281, 1109, 1124, 1385, 2213, 2470, 2633, 2752
BstNI CCWGG 2 cut(s) 1676, 2270
BstNSI RCATGY 2 cut(s) 403, 2618
BstPI GGTNACC 1 cut(s) 2003
BstSCI CCNGG 2 cut(s) 1674, 2268
BstSFI CTRYAG 7 cut(s) 273, 497, 1162, 1442, 1569, 2189, 2744
BstSLI GKGCMC 1 cut(s) 1074
BstUI CGCG 2 cut(s) 753, 1761
BstV1I GCAGC 7 cut(s) 288, 1176, 1375, 1678, 2260, 2611, 2758
BstV2I GAAGAC 3 cut(s) 195, 976, 1372
BstX2I RGATCY 2 cut(s) 793, 1633
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 2 cut(s) 793, 1633
BstZ17I GTATAC 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 1422, 2041
BsuTUI ATCGAT 2 cut(s) 1422, 2041
BtgI CCRYGG 3 cut(s) 1745, 2317, 2573
BtgZI GCGATG 1 cut(s) 210
BtsIMutI CAGTG 4 cut(s) 133, 1458, 1782, 2523
BtuMI TCGCGA 1 cut(s) 753
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 9 cut(s) 401, 549, 827, 1162, 1434, 1765, 2166, 2324, 2356
CaiI CAGNNNCTG 2 cut(s) 1352, 2522
CfoI GCGC 2 cut(s) 825, 1763
Cfr13I GGNCC 7 cut(s) 283, 493, 523, 934, 1565, 1817, 2635
ClaI ATCGAT 2 cut(s) 1422, 2041
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 6 cut(s) 1447, 1694, 1718, 1730, 2541, 2618
CviQI GTAC 6 cut(s) 1447, 1694, 1718, 1730, 2541, 2618
DraI TTTAAA 1 cut(s) 1836
EaeI YGGCCR 3 cut(s) 692, 855, 1672
Eam1104I CTCTTC 7 cut(s) 21, 54, 253, 1261, 1408, 1779, 2764
EarI CTCTTC 7 cut(s) 21, 54, 253, 1261, 1408, 1779, 2764
EciI GGCGGA 1 cut(s) 1663
Eco130I CCWWGG 5 cut(s) 286, 394, 2148, 2483, 2687
Eco147I AGGCCT 2 cut(s) 2473, 2692
Eco24I GRGCYC 1 cut(s) 1796
Eco31I GGTCTC 1 cut(s) 772
Eco32I GATATC 3 cut(s) 566, 1252, 2771
Eco47I GGWCC 3 cut(s) 523, 934, 1817
Eco57I CTGAAG 6 cut(s) 608, 1134, 1374, 1389, 1391, 2741
Eco88I CYCGRG 1 cut(s) 1065
Eco91I GGTNACC 1 cut(s) 2003
EcoNI CCTNNNNNAGG 2 cut(s) 2697, 2723
EcoO109I RGGNCCY 3 cut(s) 493, 1817, 2635
EcoO65I GGTNACC 1 cut(s) 2003
EcoRI GAATTC 2 cut(s) 1923, 2401
EcoRII CCWGG 2 cut(s) 1674, 2268
EcoRV GATATC 3 cut(s) 566, 1252, 2771
EcoT14I CCWWGG 5 cut(s) 286, 394, 2148, 2483, 2687
EcoT38I GRGCYC 1 cut(s) 1796
ErhI CCWWGG 5 cut(s) 286, 394, 2148, 2483, 2687
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 65, 97
FaqI GGGAC 4 cut(s) 1115, 1727, 1830, 2425
FauI CCCGC 1 cut(s) 1090
FbaI TGATCA 2 cut(s) 607, 633
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 8 cut(s) 230, 302, 1165, 1389, 1667, 2274, 2625, 2747
FriOI GRGCYC 1 cut(s) 1796
Fsp4HI GCNGC 8 cut(s) 230, 302, 1165, 1389, 1667, 2274, 2625, 2747
FspBI CTAG 8 cut(s) 287, 1280, 1541, 1599, 2469, 2477, 2484, 2766
GlaI GCGC 2 cut(s) 824, 1762
GluI GCNGC 8 cut(s) 230, 302, 1165, 1389, 1667, 2274, 2625, 2747
GsaI CCCAGC 2 cut(s) 1388, 2181
GsuI CTGGAG 1 cut(s) 2133
HapII CCGG 2 cut(s) 691, 1810
HgaI GACGC 1 cut(s) 1156
HhaI GCGC 2 cut(s) 825, 1763
Hin6I GCGC 2 cut(s) 823, 1761
HinP1I GCGC 2 cut(s) 823, 1761
HindIII AAGCTT 2 cut(s) 8, 994
HpaII CCGG 2 cut(s) 691, 1810
HphI GGTGA 4 cut(s) 643, 1033, 2033, 2243
Hpy166II GTNNAC 7 cut(s) 52, 140, 523, 1072, 1205, 1449, 2541
Hpy8I GTNNAC 7 cut(s) 52, 140, 523, 1072, 1205, 1449, 2541
HpyAV CCTTC 6 cut(s) 88, 1366, 1470, 1601, 2228, 2247
HpyCH4III ACNGT 8 cut(s) 386, 515, 1202, 1399, 1446, 1453, 1471, 2538
HpyCH4IV ACGT 3 cut(s) 366, 1074, 2674
HpyF10VI GCNNNNNNNGC 8 cut(s) 281, 1109, 1124, 1385, 2213, 2470, 2633, 2752
HpySE526I ACGT 3 cut(s) 366, 1074, 2674
HspAI GCGC 2 cut(s) 823, 1761
KflI GGGWCCC 1 cut(s) 1817
Ksp22I TGATCA 2 cut(s) 607, 633
LmnI GCTCC 6 cut(s) 298, 801, 1108, 1396, 2026, 2788
Lsp1109I GCAGC 7 cut(s) 288, 1176, 1375, 1678, 2260, 2611, 2758
LweI GCATC 7 cut(s) 352, 1339, 1491, 1873, 2341, 2694, 2742
MaeI CTAG 8 cut(s) 287, 1280, 1541, 1599, 2469, 2477, 2484, 2766
MaeII ACGT 3 cut(s) 366, 1074, 2674
MaeIII GTNAC 2 cut(s) 30, 2003
MbiI CCGCTC 1 cut(s) 232
MflI RGATCY 2 cut(s) 793, 1633
MhlI GDGCHC 2 cut(s) 1074, 1796
MlsI TGGCCA 1 cut(s) 1674
MluNI TGGCCA 1 cut(s) 1674
MlyI GAGTC 5 cut(s) 203, 724, 1697, 2407, 2429
MmeI TCCRAC 1 cut(s) 1418
Mox20I TGGCCA 1 cut(s) 1674
MscI TGGCCA 1 cut(s) 1674
MseI TTAA 8 cut(s) 6, 738, 962, 1245, 1545, 1835, 2036, 2373
MslI CAYNNNNRTG 2 cut(s) 1968, 2349
Msp20I TGGCCA 1 cut(s) 1674
MspA1I CMGCKG 2 cut(s) 1388, 2749
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 2 cut(s) 691, 1810
MspR9I CCNGG 2 cut(s) 1676, 2270
MvaI CCWGG 2 cut(s) 1676, 2270
MvnI CGCG 2 cut(s) 753, 1761
MwoI GCNNNNNNNGC 8 cut(s) 281, 1109, 1124, 1385, 2213, 2470, 2633, 2752
NlaIV GGNNCC 7 cut(s) 525, 1617, 1818, 1819, 2028, 2146, 2175
NruI TCGCGA 1 cut(s) 753
NspI RCATGY 2 cut(s) 403, 2618
NspV TTCGAA 1 cut(s) 2366
PaeI GCATGC 1 cut(s) 403
PceI AGGCCT 2 cut(s) 2473, 2692
PfeI GAWTC 9 cut(s) 360, 486, 748, 902, 1216, 1622, 1983, 2075, 2330
PkrI GCNGC 8 cut(s) 231, 303, 1166, 1390, 1668, 2275, 2626, 2748
PleI GAGTC 5 cut(s) 202, 724, 1696, 2407, 2429
PpsI GAGTC 5 cut(s) 202, 724, 1696, 2407, 2429
PpuMI RGGWCCY 1 cut(s) 1817
PshBI ATTAAT 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 1817
Psp6I CCWGG 2 cut(s) 1674, 2268
PspEI GGTNACC 1 cut(s) 2003
PspFI CCCAGC 2 cut(s) 1384, 2177
PspGI CCWGG 2 cut(s) 1674, 2268
PspN4I GGNNCC 7 cut(s) 525, 1617, 1818, 1819, 2028, 2146, 2175
PspPI GGNCC 7 cut(s) 283, 493, 523, 934, 1565, 1817, 2635
PspPPI RGGWCCY 1 cut(s) 1817
PstI CTGCAG 5 cut(s) 277, 1166, 1573, 2193, 2748
PstNI CAGNNNCTG 2 cut(s) 1352, 2522
PsuI RGATCY 2 cut(s) 793, 1633
PvuII CAGCTG 1 cut(s) 1388
RruI TCGCGA 1 cut(s) 753
RsaI GTAC 6 cut(s) 1448, 1695, 1719, 1731, 2542, 2619
RsaNI GTAC 6 cut(s) 1447, 1694, 1718, 1730, 2541, 2618
RseI CAYNNNNRTG 2 cut(s) 1968, 2349
SaqAI TTAA 8 cut(s) 6, 738, 962, 1245, 1545, 1835, 2036, 2373
SatI GCNGC 8 cut(s) 230, 302, 1165, 1389, 1667, 2274, 2625, 2747
Sau96I GGNCC 7 cut(s) 283, 493, 523, 934, 1565, 1817, 2635
SchI GAGTC 5 cut(s) 203, 724, 1697, 2407, 2429
ScrFI CCNGG 2 cut(s) 1676, 2270
SduI GDGCHC 2 cut(s) 1074, 1796
SfaNI GCATC 7 cut(s) 352, 1339, 1491, 1873, 2341, 2694, 2742
SfcI CTRYAG 7 cut(s) 273, 497, 1162, 1442, 1569, 2189, 2744
SfuI TTCGAA 1 cut(s) 2366
SinI GGWCC 3 cut(s) 523, 934, 1817
SmiMI CAYNNNNRTG 2 cut(s) 1968, 2349
SmlI CTYRAG 3 cut(s) 5, 1107, 2528
SmoI CTYRAG 3 cut(s) 5, 1107, 2528
SpeI ACTAGT 1 cut(s) 1540
SphI GCATGC 1 cut(s) 403
SseBI AGGCCT 2 cut(s) 2473, 2692
SsiI CCGC 7 cut(s) 230, 743, 937, 1083, 1648, 2276, 2749
SspI AATATT 2 cut(s) 721, 1243
SspMI CTAG 8 cut(s) 287, 1280, 1541, 1599, 2469, 2477, 2484, 2766
StuI AGGCCT 2 cut(s) 2473, 2692
StyD4I CCNGG 2 cut(s) 1674, 2268
StyI CCWWGG 5 cut(s) 286, 394, 2148, 2483, 2687
TaaI ACNGT 8 cut(s) 386, 515, 1202, 1399, 1446, 1453, 1471, 2538
TaiI ACGT 3 cut(s) 369, 1077, 2677
TaqI TCGA 8 cut(s) 323, 484, 489, 894, 1422, 1867, 2041, 2366
TatI WGTACW 4 cut(s) 1446, 1729, 2540, 2617
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 9 cut(s) 360, 486, 748, 902, 1216, 1622, 1983, 2075, 2330
Tru1I TTAA 8 cut(s) 6, 738, 962, 1245, 1545, 1835, 2036, 2373
Tru9I TTAA 8 cut(s) 6, 738, 962, 1245, 1545, 1835, 2036, 2373
TscAI CASTG 4 cut(s) 133, 1458, 1782, 2523
TseI GCWGC 7 cut(s) 301, 1164, 1388, 1666, 2273, 2624, 2746
TspGWI ACGGA 3 cut(s) 1698, 2198, 2497
TspRI CASTG 4 cut(s) 133, 1458, 1782, 2523
Vha464I CTTAAG 1 cut(s) 5
VneI GTGCAC 1 cut(s) 1070
VpaK11BI GGWCC 3 cut(s) 523, 934, 1817
VspI ATTAAT 1 cut(s) 738
XagI CCTNNNNNAGG 2 cut(s) 2697, 2723
XapI RAATTY 7 cut(s) 907, 1190, 1224, 1837, 1923, 2401, 2730
XbaI TCTAGA 1 cut(s) 2476
XceI RCATGY 2 cut(s) 403, 2618
XcmI CCANNNNNNNNNTGG 1 cut(s) 1997
XmaJI CCTAGG 2 cut(s) 286, 2483
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 8 cut(s) 287, 1280, 1541, 1599, 2469, 2477, 2484, 2766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.