Rh5DG056400

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007472
Physical Location & Seq
Forward (+)
4832283 .. 4840852
8570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG056400.1

Sequence Viewer

Length: 2631 bp
ATGCTTAAGCTTGTGTATAAAGGAGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTCCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCAAAGTCTTCTTCTTCTTCTTCTGTTCAGGACACATCGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGACTGCAGTTATGGCCCTAGGAGGGGAGGAGCTGCATTTGGTTGCCATGTATTCGAGGAATAATGAAAAACAGCATCCATGTTTTTGGGGATTCAACGTATCGTCTGGACTATACAGTTCTTGCCTTGGCATGCTGAACCTAAGATGTCTTGGCATTGTATTTGATCTTGATGAAACGCTTATTGTTGCAAATACAATGCGTTCATTCGAGGATCGAATTGAGGGCCTACAGAGGAAAATAAACTGCGAGGTGGACCCACAAAGGATTTCTGGTATGCAGGCAGAGATCAAGCGATATCAAGATGACAAGTTTATACTGAAGCAATATGCTGAAAATGATCAAGTTGTTGAAAATGGGAGGGTGATCAAAACTCAGTCTGAGGTTGTTCCAGCCTTGTCTGACAACCATCAACCTATCATCCGGCCACTTATACGATTGCAGGAGAAAAATATTATCCTGACTCGCATTAATCCGCAGATTCGCGATACAAGTGTTCTCGTGAGGTTGAGACCTGCATGGGAGGATCTTAGGAGCTACTTGACTGCAAGAGGGCGCAAGCGTTTTGAAGTTTATGTCTGCACAATGGCCGAAAGGGATTATGCTTTAGAAATGTGGAGGCTTCTCGATCCAGAATCAAATTTGATAAATGCAAATAAATTACTGGACCGCATCGTTTGTGTCAAGTCTGGTTTAAGGAAGTCGCTGTTCAATGTATTCCAAGAAAGTTTATGCCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGACAGAGATCAACCTCGGGTGCACGTTGTTCCCGCATTTGCACCTTACTATGCTCCTCAAGCTGAAGCAAATAATGCTGTCCCTGTCTTATGTGTTGCAAGAAATGTTGCCTGCAGCGTCAGAGGTGGCTTTTTTAGAGAATTTGACGACAGTTTACTACAAAAGATTCCTGAAATTTTTTACGAAGATAATATTAAAGATATCTCTTCTCCTGATGTGAGCAATTTTCTAGTTTCAGAGGATGATACTTCTGCTTCAAATGGAAACAGAGATCAGCTTCCTTTTGATGGCATGGCAGATGCTGAAGTTGAAAGAAGACTGAAGGAAGCAACCTCAGCCGCTCCAACAGTCTCTTCAGCAGTCAATAACATCGATCCGAGGCTTGCTTCTCTTCAGTACACAGTGCCTCCTTCCAGCACAGTTTCACTACCAACAGCTCAACCATCAATGATGCCTTTTCATAATGTGCAGTTCCCTCAGTCAGCTTCACTAGTTAAACCTTTGGGTCATGTTGGCCCTGCAGATTTAGGTTTGCATAGTTCTCCTGCTAGAGAGGAAGGGGAGGTGCCTGAATCAGAATTAGATCCTGATACAAGGCGGAGGCTACTGATTTTGCAGCATGGCCAGGACACAAGAGAGTCTGTACCAAGCGAACCTCCGTTTCCTGTAAGACCCCAAGTACAAGTCTCTGTCCCACGGGTGCAATCACGCGCAGGCTGGTTTCCAGTGGAGGAAGAGATGAGCCCACGAAAACTGAGCCGGATGGGACCCAAAGAACTTCCTTTAAATTCAGAACCCATGCAGATTGAGAAGCATCGACCTCATCATTCAGCTTTTTTCCCTAAAGTTGAGAGTTCTATGCCATCTGATAGAATTCTTCAAGAAAATCAGAGATTGCCAAAAGAGGCATTTCATAGAGATGATCGGTTGAGATTTAACCAAGCAATGTCTGGTTACCATTCATTCTCAGGTGAGGAGCCTCCCTCAAATCGATCATCTTCCAGCAACAGGGATTTTGACTTTGAATCTGGACGAGCTATATCAAATGCAGAAACTCCTGCTGGAGTTTTACAGGAAATTGCAATGAAGTGTGGGACCAAGGTGGAGTTCAGGCCAGCTTTGGTTCCCAGCACGGAACTGCAGTTTTATGTTGAGGCTTGGTTCGCAGGAGAGAAAATTGGTGAAGGAACTGGGAGAACAAGAAGGGAAGCTCATTTCCAGGCTGCGGAGGGTTCTCTAAAAAAGTTAGCCAATATATACATTTCCCGTGGCAAGCCTGATTCTCTGCCCATTCATGGGGATGCAAGCAAGTTTTCGAATGTTAATAACAATGGTTTTATGGGTAATATGAATTCTTTTGGGACTCAGCCATTTCCAAAAGAGGACTCTCTTTCATCTTCAACTTCATCAGAGCCATCTAGGCCTCTAGACCCTAGGCTGGAAAGCTCTAAGAAGACCGTGAGTTCAGTGTCTGCACTCAAGGAACTGGTAGGACTCAAAAACTTGGTTTTTTATTCTAGTTCTTCTACTCTCTCCCTCTCTCCTATTGCTTTGATTATTGCGGTGGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

876

Amino Acids

98.08

Weight (kDa)

5.98

Isoelectric Point (pI)

60.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 249 - 356 1.8e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 1621
AccBSI CCGCTC 2 cut(s) 238, 1397
AccI GTMKAC 1 cut(s) 51
AccII CGCG 2 cut(s) 759, 1767
AciI CCGC 8 cut(s) 236, 749, 943, 1089, 1395, 1654, 2282, 2618
AclWI GGATC 5 cut(s) 495, 807, 896, 1424, 1634
AcoI YGGCCR 4 cut(s) 698, 861, 1678, 2622
AcsI RAATTY 6 cut(s) 913, 1196, 1230, 1843, 1929, 2407
AcuI CTGAAG 6 cut(s) 614, 1140, 1380, 1395, 1397, 1433
AfaI GTAC 3 cut(s) 1454, 1701, 1737
AfiI CCNNNNNNNGG 9 cut(s) 132, 297, 298, 1343, 2064, 2281, 2351, 2352, 2494
AflII CTTAAG 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 1546
AjnI CCWGG 2 cut(s) 1680, 2274
AjuI GAANNNNNNNTTGG 6 cut(s) 18, 50, 1393, 1425, 2147, 2179
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 3 cut(s) 778, 1411, 1747
Alw44I GTGCAC 1 cut(s) 1076
AlwI GGATC 5 cut(s) 495, 807, 896, 1424, 1634
AlwNI CAGNNNCTG 2 cut(s) 1358, 2528
Ama87I CYCGRG 1 cut(s) 1071
AoxI GGCC 9 cut(s) 288, 499, 698, 861, 1570, 1678, 2168, 2477, 2622
ApaLI GTGCAC 1 cut(s) 1076
ApeKI GCWGC 4 cut(s) 307, 1170, 1672, 2279
ApoI RAATTY 6 cut(s) 913, 1196, 1230, 1843, 1929, 2407
AseI ATTAAT 1 cut(s) 744
AspA2I CCTAGG 2 cut(s) 292, 2489
AspLEI GCGC 2 cut(s) 831, 1769
AspS9I GGNCC 7 cut(s) 289, 499, 529, 940, 1571, 1823, 2151
AsuHPI GGTGA 4 cut(s) 649, 1039, 2039, 2249
AsuII TTCGAA 1 cut(s) 2372
AvaI CYCGRG 1 cut(s) 1071
AvaII GGWCC 4 cut(s) 529, 940, 1823, 2151
AvrII CCTAGG 2 cut(s) 292, 2489
BaeGI GKGCMC 1 cut(s) 1080
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BalI TGGCCA 1 cut(s) 1680
BanI GGYRCC 1 cut(s) 1621
BanII GRGCYC 1 cut(s) 1802
BauI CACGAG 1 cut(s) 773
BbsI GAAGAC 3 cut(s) 195, 1378, 2516
Bbv12I GWGCWC 1 cut(s) 1080
BbvCI CCTCAGC 1 cut(s) 1390
BbvI GCAGC 4 cut(s) 294, 1182, 1684, 2266
BccI CCATC 8 cut(s) 690, 1012, 1017, 1337, 1507, 1813, 1927, 2479
BciT130I CCWGG 2 cut(s) 1682, 2276
BclI TGATCA 2 cut(s) 613, 639
BcoDI GTCTC 3 cut(s) 778, 1411, 1747
BcuI ACTAGT 1 cut(s) 1546
BfaI CTAG 8 cut(s) 293, 1286, 1547, 1605, 2475, 2483, 2490, 2574
BfmI CTRYAG 5 cut(s) 279, 503, 1168, 1575, 2195
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 796
BglI GCCNNNNNGGC 1 cut(s) 2476
BisI GCNGC 6 cut(s) 236, 308, 1171, 1395, 1673, 2280
BlnI CCTAGG 2 cut(s) 292, 2489
BlsI GCNGC 6 cut(s) 237, 309, 1172, 1396, 1674, 2281
Bme1390I CCNGG 2 cut(s) 1682, 2276
Bme18I GGWCC 4 cut(s) 529, 940, 1823, 2151
BmeT110I CYCGRG 1 cut(s) 1071
BmgT120I GGNCC 7 cut(s) 289, 499, 529, 940, 1571, 1823, 2151
BmiI GGNNCC 7 cut(s) 531, 1623, 1824, 1825, 2034, 2152, 2181
BmrFI CCNGG 2 cut(s) 1682, 2276
BmrI ACTGGG 1 cut(s) 2256
BmsI GCATC 6 cut(s) 358, 954, 1345, 1497, 1879, 2347
BmuI ACTGGG 1 cut(s) 2256
BpiI GAAGAC 3 cut(s) 195, 1378, 2516
BplI GAGNNNNNCTC 2 cut(s) 2024, 2056
BpmI CTGGAG 1 cut(s) 2139
Bpu10I CCTNAGC 1 cut(s) 1390
Bpu14I TTCGAA 1 cut(s) 2372
BpuEI CTTGAG 2 cut(s) 1098, 2519
Bsa29I ATCGAT 2 cut(s) 1428, 2047
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 8 cut(s) 292, 400, 1070, 1433, 1751, 2154, 2323, 2489
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1447, 1477
Bsc4I CCNNNNNNNGG 9 cut(s) 132, 297, 298, 1343, 2064, 2281, 2351, 2352, 2494
Bse1I ACTGG 5 cut(s) 126, 942, 1781, 2251, 2547
Bse3DI GCAATG 2 cut(s) 2007, 2145
BseBI CCWGG 2 cut(s) 1682, 2276
BseCI ATCGAT 2 cut(s) 1428, 2047
BseDI CCNNGG 8 cut(s) 292, 400, 1070, 1433, 1751, 2154, 2323, 2489
BseGI GGATG 8 cut(s) 91, 349, 693, 1009, 1060, 1303, 1824, 2362
BseLI CCNNNNNNNGG 9 cut(s) 132, 297, 298, 1343, 2064, 2281, 2351, 2352, 2494
BseMI GCAATG 2 cut(s) 2007, 2145
BseMII CTCAG 7 cut(s) 645, 662, 1404, 1547, 1802, 2037, 2435
BseNI ACTGG 5 cut(s) 126, 942, 1781, 2251, 2547
BseRI GAGGAG 3 cut(s) 317, 1101, 2045
BseSI GKGCMC 1 cut(s) 1080
BseXI GCAGC 4 cut(s) 294, 1182, 1684, 2266
BseYI CCCAGC 1 cut(s) 2183
BsgI GTGCAG 3 cut(s) 838, 1544, 2514
Bsh1236I CGCG 2 cut(s) 759, 1767
BshFI GGCC 9 cut(s) 290, 501, 700, 863, 1572, 1680, 2170, 2479, 2624
BshNI GGYRCC 1 cut(s) 1621
BshVI ATCGAT 2 cut(s) 1428, 2047
BsiHKAI GWGCWC 1 cut(s) 1080
BsiHKCI CYCGRG 1 cut(s) 1071
BsiSI CCGG 2 cut(s) 697, 1816
BslFI GGGAC 5 cut(s) 1121, 1733, 1836, 2164, 2431
BslI CCNNNNNNNGG 9 cut(s) 132, 297, 298, 1343, 2064, 2281, 2351, 2352, 2494
BsmAI GTCTC 3 cut(s) 778, 1411, 1747
BsmFI GGGAC 5 cut(s) 1121, 1733, 1836, 2164, 2431
BsnI GGCC 9 cut(s) 290, 501, 700, 863, 1572, 1680, 2170, 2479, 2624
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 1071
Bsp119I TTCGAA 1 cut(s) 2372
Bsp1286I GDGCHC 2 cut(s) 1080, 1802
Bsp68I TCGCGA 1 cut(s) 759
BspACI CCGC 8 cut(s) 236, 749, 943, 1089, 1395, 1654, 2282, 2618
BspANI GGCC 9 cut(s) 290, 501, 700, 863, 1572, 1680, 2170, 2479, 2624
BspCNI CTCAG 7 cut(s) 646, 661, 1403, 1546, 1803, 2036, 2434
BspDI ATCGAT 2 cut(s) 1428, 2047
BspFNI CGCG 2 cut(s) 759, 1767
BspLI GGNNCC 7 cut(s) 531, 1623, 1824, 1825, 2034, 2152, 2181
BspMAI CTGCAG 4 cut(s) 283, 1172, 1579, 2199
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 5 cut(s) 495, 807, 896, 1424, 1634
BspT104I TTCGAA 1 cut(s) 2372
BspT107I GGYRCC 1 cut(s) 1621
BspTI CTTAAG 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 778
BsrBI CCGCTC 2 cut(s) 238, 1397
BsrDI GCAATG 2 cut(s) 2007, 2145
BsrI ACTGG 5 cut(s) 126, 942, 1781, 2251, 2547
BssECI CCNNGG 8 cut(s) 292, 400, 1070, 1433, 1751, 2154, 2323, 2489
BssNAI GTATAC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 4 cut(s) 292, 400, 2154, 2489
Bst1107I GTATAC 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 1682, 2276
Bst4CI ACNGT 6 cut(s) 392, 1208, 1405, 1459, 1477, 2515
Bst6I CTCTTC 7 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 2372
BstC8I GCNNGC 9 cut(s) 407, 555, 833, 1168, 1440, 1771, 2172, 2330, 2362
BstDSI CCRYGG 2 cut(s) 1751, 2323
BstEII GGTNACC 1 cut(s) 2009
BstF5I GGATG 8 cut(s) 91, 349, 693, 1009, 1060, 1303, 1824, 2362
BstFNI CGCG 2 cut(s) 759, 1767
BstHHI GCGC 2 cut(s) 831, 1769
BstMAI GTCTC 3 cut(s) 778, 1411, 1747
BstMWI GCNNNNNNNGC 6 cut(s) 287, 1115, 1130, 1391, 2219, 2476
BstNI CCWGG 2 cut(s) 1682, 2276
BstNSI RCATGY 1 cut(s) 409
BstPI GGTNACC 1 cut(s) 2009
BstSCI CCNGG 2 cut(s) 1680, 2274
BstSFI CTRYAG 5 cut(s) 279, 503, 1168, 1575, 2195
BstSLI GKGCMC 1 cut(s) 1080
BstUI CGCG 2 cut(s) 759, 1767
BstV1I GCAGC 4 cut(s) 294, 1182, 1684, 2266
BstV2I GAAGAC 3 cut(s) 195, 1378, 2516
BstX2I RGATCY 2 cut(s) 799, 1639
BstXI CCANNNNNNTGG 1 cut(s) 360
BstYI RGATCY 2 cut(s) 799, 1639
BstZ17I GTATAC 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 1428, 2047
BsuRI GGCC 9 cut(s) 290, 501, 700, 863, 1572, 1680, 2170, 2479, 2624
BsuTUI ATCGAT 2 cut(s) 1428, 2047
BtgI CCRYGG 2 cut(s) 1751, 2323
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 8 cut(s) 91, 349, 693, 1009, 1060, 1303, 1824, 2362
BtsIMutI CAGTG 4 cut(s) 133, 1464, 1788, 2529
BtuMI TCGCGA 1 cut(s) 759
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 9 cut(s) 407, 555, 833, 1168, 1440, 1771, 2172, 2330, 2362
CaiI CAGNNNCTG 2 cut(s) 1358, 2528
CfoI GCGC 2 cut(s) 831, 1769
Cfr13I GGNCC 7 cut(s) 289, 499, 529, 940, 1571, 1823, 2151
ClaI ATCGAT 2 cut(s) 1428, 2047
CseI GACGC 1 cut(s) 1162
Csp6I GTAC 3 cut(s) 1453, 1700, 1736
CviQI GTAC 3 cut(s) 1453, 1700, 1736
DraI TTTAAA 1 cut(s) 1842
EaeI YGGCCR 4 cut(s) 698, 861, 1678, 2622
Eam1104I CTCTTC 7 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785
EarI CTCTTC 7 cut(s) 21, 54, 259, 1267, 1414, 1452, 1785
EciI GGCGGA 1 cut(s) 1669
Eco130I CCWWGG 4 cut(s) 292, 400, 2154, 2489
Eco147I AGGCCT 1 cut(s) 2479
Eco24I GRGCYC 1 cut(s) 1802
Eco31I GGTCTC 1 cut(s) 778
Eco32I GATATC 2 cut(s) 572, 1258
Eco47I GGWCC 4 cut(s) 529, 940, 1823, 2151
Eco57I CTGAAG 6 cut(s) 614, 1140, 1380, 1395, 1397, 1433
Eco88I CYCGRG 1 cut(s) 1071
Eco91I GGTNACC 1 cut(s) 2009
EcoO109I RGGNCCY 2 cut(s) 499, 1823
EcoO65I GGTNACC 1 cut(s) 2009
EcoRI GAATTC 2 cut(s) 1929, 2407
EcoRII CCWGG 2 cut(s) 1680, 2274
EcoRV GATATC 2 cut(s) 572, 1258
EcoT14I CCWWGG 4 cut(s) 292, 400, 2154, 2489
EcoT38I GRGCYC 1 cut(s) 1802
ErhI CCWWGG 4 cut(s) 292, 400, 2154, 2489
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 65, 97
FaqI GGGAC 5 cut(s) 1121, 1733, 1836, 2164, 2431
FauI CCCGC 1 cut(s) 1096
FbaI TGATCA 2 cut(s) 613, 639
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 6 cut(s) 236, 308, 1171, 1395, 1673, 2280
FokI GGATG 8 cut(s) 98, 336, 680, 996, 1067, 1310, 1831, 2369
FriOI GRGCYC 1 cut(s) 1802
Fsp4HI GCNGC 6 cut(s) 236, 308, 1171, 1395, 1673, 2280
FspBI CTAG 8 cut(s) 293, 1286, 1547, 1605, 2475, 2483, 2490, 2574
GlaI GCGC 2 cut(s) 830, 1768
GluI GCNGC 6 cut(s) 236, 308, 1171, 1395, 1673, 2280
GsaI CCCAGC 1 cut(s) 2187
GsuI CTGGAG 1 cut(s) 2139
HaeIII GGCC 9 cut(s) 290, 501, 700, 863, 1572, 1680, 2170, 2479, 2624
HapII CCGG 2 cut(s) 697, 1816
HgaI GACGC 1 cut(s) 1162
HhaI GCGC 2 cut(s) 831, 1769
Hin6I GCGC 2 cut(s) 829, 1767
HinP1I GCGC 2 cut(s) 829, 1767
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 2 cut(s) 697, 1816
HphI GGTGA 4 cut(s) 649, 1039, 2039, 2249
Hpy166II GTNNAC 6 cut(s) 52, 140, 529, 1078, 1211, 1455
Hpy8I GTNNAC 6 cut(s) 52, 140, 529, 1078, 1211, 1455
HpyAV CCTTC 7 cut(s) 88, 164, 1372, 1476, 1607, 2234, 2253
HpyCH4III ACNGT 6 cut(s) 392, 1208, 1405, 1459, 1477, 2515
HpyCH4IV ACGT 2 cut(s) 372, 1080
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 1115, 1130, 1391, 2219, 2476
HpySE526I ACGT 2 cut(s) 372, 1080
HspAI GCGC 2 cut(s) 829, 1767
KflI GGGWCCC 1 cut(s) 1823
Ksp22I TGATCA 2 cut(s) 613, 639
LmnI GCTCC 5 cut(s) 304, 807, 1114, 1402, 2032
Lsp1109I GCAGC 4 cut(s) 294, 1182, 1684, 2266
LweI GCATC 6 cut(s) 358, 954, 1345, 1497, 1879, 2347
MaeI CTAG 8 cut(s) 293, 1286, 1547, 1605, 2475, 2483, 2490, 2574
MaeII ACGT 2 cut(s) 372, 1080
MaeIII GTNAC 2 cut(s) 30, 2009
MbiI CCGCTC 2 cut(s) 238, 1397
MflI RGATCY 2 cut(s) 799, 1639
MhlI GDGCHC 2 cut(s) 1080, 1802
MlsI TGGCCA 1 cut(s) 1680
MluNI TGGCCA 1 cut(s) 1680
MlyI GAGTC 6 cut(s) 203, 730, 1703, 2413, 2435, 2544
MmeI TCCRAC 1 cut(s) 1424
Mox20I TGGCCA 1 cut(s) 1680
MscI TGGCCA 1 cut(s) 1680
MseI TTAA 8 cut(s) 6, 744, 968, 1251, 1551, 1841, 1992, 2379
MslI CAYNNNNRTG 2 cut(s) 1974, 2355
Msp20I TGGCCA 1 cut(s) 1680
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 2 cut(s) 697, 1816
MspR9I CCNGG 2 cut(s) 1682, 2276
MvaI CCWGG 2 cut(s) 1682, 2276
MvnI CGCG 2 cut(s) 759, 1767
MwoI GCNNNNNNNGC 6 cut(s) 287, 1115, 1130, 1391, 2219, 2476
NlaIV GGNNCC 7 cut(s) 531, 1623, 1824, 1825, 2034, 2152, 2181
NruI TCGCGA 1 cut(s) 759
NspI RCATGY 1 cut(s) 409
NspV TTCGAA 1 cut(s) 2372
PaeI GCATGC 1 cut(s) 409
PceI AGGCCT 1 cut(s) 2479
PfeI GAWTC 7 cut(s) 366, 754, 908, 1222, 1628, 2081, 2336
PkrI GCNGC 6 cut(s) 237, 309, 1172, 1396, 1674, 2281
PleI GAGTC 6 cut(s) 202, 730, 1702, 2413, 2435, 2544
PpsI GAGTC 6 cut(s) 202, 730, 1702, 2413, 2435, 2544
PpuMI RGGWCCY 1 cut(s) 1823
PshBI ATTAAT 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 1823
Psp6I CCWGG 2 cut(s) 1680, 2274
PspEI GGTNACC 1 cut(s) 2009
PspFI CCCAGC 1 cut(s) 2183
PspGI CCWGG 2 cut(s) 1680, 2274
PspN4I GGNNCC 7 cut(s) 531, 1623, 1824, 1825, 2034, 2152, 2181
PspPI GGNCC 7 cut(s) 289, 499, 529, 940, 1571, 1823, 2151
PspPPI RGGWCCY 1 cut(s) 1823
PstI CTGCAG 4 cut(s) 283, 1172, 1579, 2199
PstNI CAGNNNCTG 2 cut(s) 1358, 2528
PsuI RGATCY 2 cut(s) 799, 1639
RruI TCGCGA 1 cut(s) 759
RsaI GTAC 3 cut(s) 1454, 1701, 1737
RsaNI GTAC 3 cut(s) 1453, 1700, 1736
RseI CAYNNNNRTG 2 cut(s) 1974, 2355
SaqAI TTAA 8 cut(s) 6, 744, 968, 1251, 1551, 1841, 1992, 2379
SatI GCNGC 6 cut(s) 236, 308, 1171, 1395, 1673, 2280
Sau96I GGNCC 7 cut(s) 289, 499, 529, 940, 1571, 1823, 2151
SchI GAGTC 6 cut(s) 203, 730, 1703, 2413, 2435, 2544
ScrFI CCNGG 2 cut(s) 1682, 2276
SduI GDGCHC 2 cut(s) 1080, 1802
SfaNI GCATC 6 cut(s) 358, 954, 1345, 1497, 1879, 2347
SfcI CTRYAG 5 cut(s) 279, 503, 1168, 1575, 2195
SfuI TTCGAA 1 cut(s) 2372
SinI GGWCC 4 cut(s) 529, 940, 1823, 2151
SmiMI CAYNNNNRTG 2 cut(s) 1974, 2355
SmlI CTYRAG 3 cut(s) 5, 1113, 2534
SmoI CTYRAG 3 cut(s) 5, 1113, 2534
SpeI ACTAGT 1 cut(s) 1546
SphI GCATGC 1 cut(s) 409
SseBI AGGCCT 1 cut(s) 2479
SsiI CCGC 8 cut(s) 236, 749, 943, 1089, 1395, 1654, 2282, 2618
SspI AATATT 2 cut(s) 727, 1249
SspMI CTAG 8 cut(s) 293, 1286, 1547, 1605, 2475, 2483, 2490, 2574
StuI AGGCCT 1 cut(s) 2479
StyD4I CCNGG 2 cut(s) 1680, 2274
StyI CCWWGG 4 cut(s) 292, 400, 2154, 2489
TaaI ACNGT 6 cut(s) 392, 1208, 1405, 1459, 1477, 2515
TaiI ACGT 2 cut(s) 375, 1083
TaqI TCGA 8 cut(s) 329, 483, 490, 900, 1428, 1873, 2047, 2372
TatI WGTACW 2 cut(s) 1452, 1735
TauI GCSGC 2 cut(s) 238, 1397
TfiI GAWTC 7 cut(s) 366, 754, 908, 1222, 1628, 2081, 2336
Tru1I TTAA 8 cut(s) 6, 744, 968, 1251, 1551, 1841, 1992, 2379
Tru9I TTAA 8 cut(s) 6, 744, 968, 1251, 1551, 1841, 1992, 2379
TscAI CASTG 4 cut(s) 133, 1464, 1788, 2529
TseI GCWGC 4 cut(s) 307, 1170, 1672, 2279
TspGWI ACGGA 2 cut(s) 1704, 2204
TspRI CASTG 4 cut(s) 133, 1464, 1788, 2529
Vha464I CTTAAG 1 cut(s) 5
VneI GTGCAC 1 cut(s) 1076
VpaK11BI GGWCC 4 cut(s) 529, 940, 1823, 2151
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 6 cut(s) 913, 1196, 1230, 1843, 1929, 2407
XbaI TCTAGA 1 cut(s) 2482
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 2003
XmaJI CCTAGG 2 cut(s) 292, 2489
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 8 cut(s) 293, 1286, 1547, 1605, 2475, 2483, 2490, 2574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.