Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007472

Physical Location & Seq

Genomic Coordinates Forward (+)

59057463 .. 59059014

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0432200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTACAGAGTGACACGTAGCGCGAGGATTATGGGATGGGCTCGTGCAGAAATTGATGGCTTCTTCGTCGTTGAGATCTTCGTTGACGATAACGGCAGCGGCCGCTGTGAACAATGGCGGAGCTGGAAGGTTCGAGAGGCAGCAACTCCATCCCGCTCGGCAAACGACTTCGTCTGTTCGATTCAAGCCGGCGTCTTCCTCGACCGTGGAGGCTTCGGCCGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTCGTCGTCGACAGCAAAAGCCACGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTATTGCTATTCTTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGACTGCTCCTCGTGGTTTTGGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAAAGGAAAGTCACCGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGCATGCAAATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001101 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

209

Amino Acids

22.99

Weight (kDa)

10.21

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	76 - 121	3.5e-12	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	138 - 172	7.3e-08	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21670
fragaria_vesca	FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830 FvH4_3g04830
malus_domestica	MD05G1316500.v1.1 MD10G1297000.v1.1
prunus_persica	Prupe.4G043500_v2.0.a1
pyrus_communis	pycom05g29360 pycom10g24990
rosa_chinensis	RchiOBHm_Chr5g0007991
rosa_laevigata	RLG00000031525
rosa_multiflora	Rmu_sc0007348.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068480
rosa_rugosa	Rorug04G0432200
rosa_samantha	Rh5AG060400 Rh5BG057200 Rh5CG067300 Rh5DG056400
rosa_wichuraiana	Rw5G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	23, 222
AciI	CCGC	6 cut(s)	99, 103, 118, 154, 220, 222
AcoI	YGGCCR	2 cut(s)	100, 217
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	580
AgsI	TTSAA	2 cut(s)	185, 238
AjiI	CACGTC	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	4 cut(s)	123, 343, 523, 553
AluI	AGCT	4 cut(s)	123, 343, 523, 553
AoxI	GGCC	2 cut(s)	100, 217
ApeKI	GCWGC	3 cut(s)	96, 140, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AsiGI	ACCGGT	1 cut(s)	580
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	361, 400, 454, 570
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	2 cut(s)	42, 453
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	108, 152, 306
BccI	CCATC	4 cut(s)	30, 50, 157, 433
BceAI	ACGGC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	6 cut(s)	97, 100, 103, 141, 220, 295
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	6 cut(s)	98, 101, 104, 142, 221, 296
BmgBI	CACGTC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	325, 483
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	205, 220
BsaWI	WCCGGW	2 cut(s)	410, 580
Bse118I	RCCGGY	2 cut(s)	188, 580
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	205, 220
BseGI	GGATG	3 cut(s)	41, 149, 444
BseMI	GCAATG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	376, 441
BseX3I	CGGCCG	2 cut(s)	100, 217
BseXI	GCAGC	3 cut(s)	108, 152, 306
BsgI	GTGCAG	2 cut(s)	66, 313
Bsh1236I	CGCG	2 cut(s)	23, 222
Bsh1285I	CGRYCG	3 cut(s)	103, 205, 220
BshFI	GGCC	2 cut(s)	102, 219
BshTI	ACCGGT	1 cut(s)	580
BsiEI	CGRYCG	3 cut(s)	103, 205, 220
BsiSI	CCGG	3 cut(s)	189, 411, 581
BsnI	GGCC	2 cut(s)	102, 219
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	75, 375
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	6 cut(s)	99, 103, 118, 154, 220, 222
BspANI	GGCC	2 cut(s)	102, 219
BspFNI	CGCG	2 cut(s)	23, 222
BspLI	GGNNCC	2 cut(s)	325, 483
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	2 cut(s)	188, 580
BsrGI	TGTACA	1 cut(s)	3
BssAI	RCCGGY	2 cut(s)	188, 580
BssECI	CCNNGG	2 cut(s)	205, 220
BssMI	GATC	2 cut(s)	75, 375
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	2 cut(s)	42, 453
Bst2BI	CACGAG	2 cut(s)	42, 453
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	190, 555, 617
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	205, 220
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	41, 149, 444
BstFNI	CGCG	2 cut(s)	23, 222
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	78, 378
BstMBI	GATC	2 cut(s)	75, 375
BstMCI	CGRYCG	3 cut(s)	103, 205, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 219, 291, 550, 563
BstNSI	RCATGY	1 cut(s)	619
BstPI	GGTNACC	1 cut(s)	406
BstUI	CGCG	2 cut(s)	23, 222
BstV1I	GCAGC	3 cut(s)	108, 152, 306
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	2 cut(s)	334, 506
BstYI	RGATCY	1 cut(s)	75
BstZI	CGGCCG	2 cut(s)	100, 217
BsuRI	GGCC	2 cut(s)	102, 219
BtgI	CCRYGG	2 cut(s)	205, 220
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	41, 149, 444
Cac8I	GCNNGC	3 cut(s)	190, 555, 617
CciNI	GCGGCCGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	2 cut(s)	188, 580
Cfr42I	CCGCGG	1 cut(s)	223
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	580
CviAII	CATG	3 cut(s)	394, 616, 627
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	77, 377
DpnII	GATC	2 cut(s)	75, 375
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	100, 217
EagI	CGGCCG	2 cut(s)	100, 217
EciI	GGCGGA	1 cut(s)	133
EclXI	CGGCCG	2 cut(s)	100, 217
Eco24I	GRGCYC	1 cut(s)	43
Eco52I	CGGCCG	2 cut(s)	100, 217
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	3 cut(s)	397, 619, 630
FaiI	YATR	4 cut(s)	32, 395, 617, 628
FatI	CATG	3 cut(s)	393, 615, 626
FauI	CCCGC	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	6 cut(s)	97, 100, 103, 141, 220, 295
FokI	GGATG	3 cut(s)	48, 136, 451
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	6 cut(s)	97, 100, 103, 141, 220, 295
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	6 cut(s)	97, 100, 103, 141, 220, 295
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	102, 219
HapII	CCGG	3 cut(s)	189, 411, 581
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	397, 619, 630
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	2 cut(s)	85, 259
HindII	GTYRAC	2 cut(s)	85, 259
HinfI	GANTC	4 cut(s)	181, 225, 279, 352
HpaII	CCGG	3 cut(s)	189, 411, 581
HphI	GGTGA	4 cut(s)	361, 400, 454, 570
Hpy166II	GTNNAC	3 cut(s)	85, 110, 259
Hpy188I	TCNGA	3 cut(s)	230, 278, 380
Hpy188III	TCNNGA	2 cut(s)	134, 600
Hpy8I	GTNNAC	3 cut(s)	85, 110, 259
Hpy99I	CGWCG	5 cut(s)	71, 254, 257, 260, 278
HpyAV	CCTTC	3 cut(s)	121, 484, 529
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	16, 273
HpyCH4V	TGCA	5 cut(s)	47, 294, 397, 402, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 219, 291, 550, 563
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	16, 273
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	397, 619, 630
HspAI	GCGC	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	75, 375
LmnI	GCTCC	4 cut(s)	120, 323, 454, 550
LpnPI	CCDG	7 cut(s)	109, 202, 369, 424, 492, 585, 594
Lsp1109I	GCAGC	3 cut(s)	108, 152, 306
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	16, 273
MaeIII	GTNAC	5 cut(s)	10, 368, 406, 442, 576
MalI	GATC	2 cut(s)	77, 377
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	75, 375
MboII	GAAGA	3 cut(s)	55, 70, 187
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	3 cut(s)	51, 500, 605
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	399
MroNI	GCCGGC	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	2 cut(s)	528, 585
MslI	CAYNNNNRTG	2 cut(s)	332, 620
MspA1I	CMGCKG	3 cut(s)	99, 105, 222
MspI	CCGG	3 cut(s)	189, 411, 581
MvnI	CGCG	2 cut(s)	23, 222
MwoI	GCNNNNNNNGC	5 cut(s)	102, 219, 291, 550, 563
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	2 cut(s)	75, 375
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	3 cut(s)	397, 619, 630
NlaIV	GGNNCC	2 cut(s)	325, 483
NmeAIII	GCCGAG	2 cut(s)	137, 261
NmuCI	GTSAC	4 cut(s)	10, 406, 442, 576
NotI	GCGGCCGC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	619
PaeI	GCATGC	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	181, 225, 352
PflFI	GACNNNGTC	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	580
PkrI	GCNGC	6 cut(s)	98, 101, 104, 142, 221, 296
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	325, 483
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	332, 620
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	528, 585
SatI	GCNGC	6 cut(s)	97, 100, 103, 141, 220, 295
Sau3AI	GATC	2 cut(s)	75, 375
SchI	GAGTC	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	294
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	332, 620
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	3 cut(s)	51, 500, 605
SsiI	CCGC	6 cut(s)	99, 103, 118, 154, 220, 222
SspMI	CTAG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	19, 276
TaqI	TCGA	4 cut(s)	133, 179, 201, 258
TasI	AATT	3 cut(s)	51, 500, 605
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	102, 105, 222
TfiI	GAWTC	3 cut(s)	181, 225, 352
Tru1I	TTAA	2 cut(s)	528, 585
Tru9I	TTAA	2 cut(s)	528, 585
TseFI	GTSAC	4 cut(s)	10, 406, 442, 576
TseI	GCWGC	3 cut(s)	96, 140, 294
Tsp45I	GTSAC	4 cut(s)	10, 406, 442, 576
Tth111I	GACNNNGTC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.