FvH4_3g05160

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005969
Physical Location & Seq
Reverse (-)
2984665 .. 2989384
4720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05160.t4

Sequence Viewer

Length: 1005 bp
ATGGAAGTGGATGGAGGAAAAGTCTTGAAAGTATCTAGTGGTGCTGCTCAATCTGTTCCGCGACATTCCAGAAAACATAAAGCTTTCTATCAGTTTACTCAGCAGAGTCTCCCTGCTTGTAAACCTATTCTCACACCACCATGGGTGATTACTACATTTTTATTGATGGGTGTCATTTTCATACCTCTTGGGCTTATTACTCTACATGCCTCTGAGAATATTGTTGAAATTGTGGACCGATATGATAATGACTGTGTGCCAGAAGCATTCAGAAGCAATAAGGTGGCATATATAAAAAATAATTCGATTCCCAAAAACTGTTCTCGTTACTTGAAGGTCTACAAGCATATGAAAGCTCCAATAAATATCTACTATCAGCTTGATAACTACTATCAGAACCACAGACGGTATGTCAAAAGTAAAAATGATGAACAGCTTTTACATGGATTGGGGTACAATGACACGAGTTCTTGTAAACCTGAGGAGTCCAACAATGGTCTTCCAGTTGTGCCTTGTGGTTTGATAGCATGGAGTTTGTTTAATGATACATATACTCTTATCCGTAGAAGATCAGAGCTAAAGGTCAACAGGAAGAACATAGCATGGAAGAGTGACCGTGATCATAAGTTTGGGAAGAATGTATATCCCTTCAATTTTCAGAACGGCACCTTGATGGGTGGTGGAAAGCTAGACCCAAGGATCCCTCTAAGTGATCAAGAAGATCTTATTGTATGGATGCGGACAGCTGCGCTCCCCAGTTTCCGTAAGTTGTATGGTAGAATTGAAGAGGATTTGAATGCAGATGATGTTGTAGTAGTCAATGTAACGAACAACTACAATACTTATAGTTTTGATGGGAAGAAGACGCTCATTCTTACAACAACAGGCTGGTTAGGAGGAAAGAACAACTTCCTTGGGTTTGCCTGCACTTCTGTTGGTTCAAGTTCCATATTCATCTCTATTGTCTTTTTGCTGCTCCACATGAAAAATCCCAGGAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

335

Amino Acids

38.0

Weight (kDa)

9.42

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 68 - 332 2.6e-81 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 59, 739
AclWI GGATC 2 cut(s) 694, 707
AfaI GTAC 1 cut(s) 455
AgsI TTSAA 7 cut(s) 28, 227, 334, 652, 785, 796, 942
AhdI GACNNNNNGTC 1 cut(s) 410
AjnI CCWGG 1 cut(s) 992
AluBI AGCT 7 cut(s) 83, 356, 379, 436, 577, 688, 746
AluI AGCT 7 cut(s) 83, 356, 379, 436, 577, 688, 746
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 694, 707
ApeKI GCWGC 3 cut(s) 44, 746, 973
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 480
BamHI GGATCC 1 cut(s) 699
BanI GGYRCC 1 cut(s) 665
BauI CACGAG 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 491, 869
BbvI GCAGC 3 cut(s) 31, 733, 960
BccI CCATC 4 cut(s) 5, 160, 667, 848
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 994
BclI TGATCA 2 cut(s) 619, 712
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 36, 689
BglII AGATCT 1 cut(s) 721
BisI GCNGC 3 cut(s) 45, 747, 974
BlsI GCNGC 3 cut(s) 46, 748, 975
Bme1390I CCNGG 1 cut(s) 994
Bme18I GGWCC 1 cut(s) 235
BmeRI GACNNNNNGTC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 667, 701
BmrFI CCNGG 1 cut(s) 994
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 1 cut(s) 726
BmuI ACTGGG 1 cut(s) 750
BpiI GAAGAC 2 cut(s) 491, 869
BsaJI CCNNGG 4 cut(s) 140, 695, 913, 992
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 2 cut(s) 503, 756
Bse21I CCTNAGG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 994
BseDI CCNNGG 4 cut(s) 140, 695, 913, 992
BseGI GGATG 2 cut(s) 16, 741
BseMII CTCAG 3 cut(s) 113, 204, 471
BseNI ACTGG 2 cut(s) 503, 756
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 3 cut(s) 31, 733, 960
BsgI GTGCAG 1 cut(s) 910
Bsh1236I CGCG 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 266, 802
Bsp143I GATC 5 cut(s) 569, 619, 699, 712, 721
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 2 cut(s) 59, 739
BspCNI CTCAG 3 cut(s) 112, 205, 472
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 667, 701
BspPI GGATC 2 cut(s) 694, 707
BspT107I GGYRCC 1 cut(s) 665
BsrI ACTGG 2 cut(s) 503, 756
BssECI CCNNGG 4 cut(s) 140, 695, 913, 992
BssMI GATC 5 cut(s) 569, 619, 699, 712, 721
BssSI CACGAG 1 cut(s) 463
BssT1I CCWWGG 3 cut(s) 140, 695, 913
Bst2BI CACGAG 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 994
Bst4CI ACNGT 4 cut(s) 254, 320, 408, 617
Bst6I CTCTTC 2 cut(s) 602, 780
BstC8I GCNNGC 1 cut(s) 925
BstDEI CTNAG 4 cut(s) 99, 213, 480, 707
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 16, 741
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 572, 622, 702, 715, 724
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 5 cut(s) 569, 619, 699, 712, 721
BstNI CCWGG 1 cut(s) 994
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 992
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 31, 733, 960
BstV2I GAAGAC 2 cut(s) 491, 869
BstX2I RGATCY 2 cut(s) 699, 721
BstYI RGATCY 2 cut(s) 699, 721
Bsu36I CCTNAGG 1 cut(s) 480
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 2 cut(s) 16, 741
Cac8I GCNNGC 1 cut(s) 925
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 874
Csp6I GTAC 1 cut(s) 454
CviAII CATG 6 cut(s) 141, 206, 443, 528, 603, 982
CviJI RGCY 9 cut(s) 83, 193, 356, 379, 436, 577, 688, 746, 888
CviKI_1 RGCY 9 cut(s) 83, 193, 356, 379, 436, 577, 688, 746, 888
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 4 cut(s) 99, 213, 480, 707
DpnI GATC 5 cut(s) 571, 621, 701, 714, 723
DpnII GATC 5 cut(s) 569, 619, 699, 712, 721
DriI GACNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 602, 780
Eam1105I GACNNNNNGTC 1 cut(s) 410
EarI CTCTTC 2 cut(s) 602, 780
Eco130I CCWWGG 3 cut(s) 140, 695, 913
Eco47I GGWCC 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 992
EcoT14I CCWWGG 3 cut(s) 140, 695, 913
ErhI CCWWGG 3 cut(s) 140, 695, 913
FaeI CATG 6 cut(s) 144, 209, 446, 531, 606, 985
FalI AAGNNNNNCTT 4 cut(s) 708, 740, 893, 925
FatI CATG 6 cut(s) 140, 205, 442, 527, 602, 981
FauNDI CATATG 1 cut(s) 348
FbaI TGATCA 2 cut(s) 619, 712
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 45, 747, 974
FokI GGATG 2 cut(s) 23, 748
Fsp4HI GCNGC 3 cut(s) 45, 747, 974
FspBI CTAG 2 cut(s) 36, 689
GlaI GCGC 1 cut(s) 750
GluI GCNGC 3 cut(s) 45, 747, 974
HgaI GACGC 1 cut(s) 874
HhaI GCGC 1 cut(s) 751
Hin1II CATG 6 cut(s) 144, 209, 446, 531, 606, 985
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 4 cut(s) 106, 307, 485, 997
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 6 cut(s) 96, 122, 235, 340, 476, 586
Hpy188I TCNGA 5 cut(s) 214, 272, 396, 574, 660
Hpy188III TCNNGA 3 cut(s) 25, 69, 716
Hpy8I GTNNAC 6 cut(s) 96, 122, 235, 340, 476, 586
HpyAV CCTTC 2 cut(s) 328, 658
HpyCH4III ACNGT 4 cut(s) 254, 320, 408, 617
HpyCH4V TGCA 2 cut(s) 800, 927
HpyF3I CTNAG 4 cut(s) 99, 213, 480, 707
Hsp92II CATG 6 cut(s) 144, 209, 446, 531, 606, 985
HspAI GCGC 1 cut(s) 749
Ksp22I TGATCA 2 cut(s) 619, 712
Kzo9I GATC 5 cut(s) 569, 619, 699, 712, 721
LmnI GCTCC 3 cut(s) 361, 756, 981
Lsp1109I GCAGC 3 cut(s) 31, 733, 960
LweI GCATC 1 cut(s) 726
MaeI CTAG 2 cut(s) 36, 689
MaeIII GTNAC 3 cut(s) 326, 611, 823
MalI GATC 5 cut(s) 571, 621, 701, 714, 723
MboI GATC 5 cut(s) 569, 619, 699, 712, 721
MboII GAAGA 9 cut(s) 491, 579, 604, 619, 646, 731, 797, 871, 874
MflI RGATCY 2 cut(s) 699, 721
MluCI AATT 4 cut(s) 228, 301, 652, 780
MlyI GAGTC 2 cut(s) 115, 494
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 7 cut(s) 8, 195, 220, 475, 714, 781, 890
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 2 cut(s) 139, 671
MspA1I CMGCKG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 994
Mva1269I GAATGC 2 cut(s) 266, 802
MvaI CCWGG 1 cut(s) 994
MvnI CGCG 1 cut(s) 61
NcoI CCATGG 1 cut(s) 140
NdeI CATATG 1 cut(s) 348
NdeII GATC 5 cut(s) 569, 619, 699, 712, 721
NlaIII CATG 6 cut(s) 144, 209, 446, 531, 606, 985
NlaIV GGNNCC 2 cut(s) 667, 701
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 209
PctI GAATGC 2 cut(s) 266, 802
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 307, 997
PkrI GCNGC 3 cut(s) 46, 748, 975
PleI GAGTC 2 cut(s) 114, 493
PpsI GAGTC 2 cut(s) 114, 493
Psp6I CCWGG 1 cut(s) 992
PspGI CCWGG 1 cut(s) 992
PspN4I GGNNCC 2 cut(s) 667, 701
PspPI GGNCC 1 cut(s) 235
PsrI GAACNNNNNNTAC 2 cut(s) 423, 455
PsuI RGATCY 2 cut(s) 699, 721
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 139, 671
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 3 cut(s) 45, 747, 974
Sau3AI GATC 5 cut(s) 569, 619, 699, 712, 721
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 115, 494
ScrFI CCNGG 1 cut(s) 994
SfaNI GCATC 1 cut(s) 726
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 139, 671
Sse9I AATT 4 cut(s) 228, 301, 652, 780
SsiI CCGC 2 cut(s) 59, 739
SspI AATATT 1 cut(s) 220
SspMI CTAG 2 cut(s) 36, 689
StyD4I CCNGG 1 cut(s) 992
StyI CCWWGG 3 cut(s) 140, 695, 913
TaaI ACNGT 4 cut(s) 254, 320, 408, 617
TaqI TCGA 1 cut(s) 305
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 228, 301, 652, 780
TfiI GAWTC 2 cut(s) 307, 997
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 3 cut(s) 44, 746, 973
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 5 cut(s) 169, 365, 444, 943, 998
TspGWI ACGGA 2 cut(s) 551, 752
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 2 cut(s) 36, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.