RLG00000032131

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005969
Physical Location & Seq
Forward (+)
11258861 .. 11262002
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032131

Sequence Viewer

Length: 1065 bp
ATGGAAGTGGATGGAGGAAGAATCTTAAAAGTATCTAGTGGTGCTCAATCTATACCACGACATTCCAGCAAACATAAAGCTTTCTATCAATTTACTCAGCAGAGTCTCCCTGCTTGTAAACCTGTCCTCACACCAGCATGGGTGATTACTACATTTTTTTTTATGGGTGTCCTTTTCATACCTATTGGGCTTATTACTCTTCATGCCTCTGAGAATGTTGTTGAAATAGTGGACCGATATGATACTGAATGTGTCCCAGAAGCATTCAGAAGCAACAAGGTGGCATATATCAAAGATAACTCAATTCCCAAAAACTGTTCACGGTACTTGAAGGTCTACAAGCATATGAAAGCTCCAATAAATATCTACTATCAGCTTGATAACTACTTTCAGAACCACAGACGGTATGTCAAAAGTAAAAATGATCGACAGCTTTTACATGGATTGGGGTACAATGACACGGGCTCCTGTAAACCTGAGGAGTCCAACAATGGTCTTCCAATTGTTCCTTGTGGTTTAATAGCATGGAGTTTGTTTAATGATACATATACTCTTATTCGTGGAAGATCAGAGTTAAAGGTCAACAGGAAGAACATAGCATGGAAGAGTGACCGTGATCACAAGTTTGGGAAGAGTGTATATCCCTTCAATTTTCAGAACGGCACCTTGATGGGTGGTGGAAAGCTAGACCCAAGAATCTCTCTAAGCGATCAAGAAGATCTTATTGTATGGATGCGGACAGCTGCGCTCCCCAGTTTCCGTAAGCTGTATGGTAGAATTGAAGAGGATTTGAATGCAGATGATGTTGTGGTAGTCAATGTAACCAACAACTACAATACTTATAGTTTTGGTGGGAAAAAGAAGCTTATTCTTTCAACTACAGGCTGGTTAGGAGGAAAGAACAACTTCCTTGGGCTTGCCTGCACTTCTGTTGGTTCAAGTTCCATATTCATTTCTATTGTCTTCTTGCTGCTCCACATGAAAAATCCCAGGCACTGTAGGGAAACAACTTTTTTGTACATCTTGGAACAACAAAAGCATGTCCAGTTGAAGAGGCGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

355

Amino Acids

40.48

Weight (kDa)

9.56

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 67 - 331 3.6e-81 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 336
AciI CCGC 1 cut(s) 736
AfaI GTAC 3 cut(s) 326, 452, 1019
AgsI TTSAA 8 cut(s) 224, 331, 649, 782, 793, 876, 939, 1051
AhdI GACNNNNNGTC 1 cut(s) 407
AjnI CCWGG 1 cut(s) 989
AluBI AGCT 8 cut(s) 80, 353, 376, 433, 685, 743, 766, 865
AluI AGCT 8 cut(s) 80, 353, 376, 433, 685, 743, 766, 865
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 996
ApeKI GCWGC 2 cut(s) 743, 970
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 477
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 2 cut(s) 488, 955
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 730, 957
BccI CCATC 3 cut(s) 5, 664, 1053
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 991
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 36, 686
BfmI CTRYAG 2 cut(s) 879, 997
BglII AGATCT 1 cut(s) 718
BisI GCNGC 2 cut(s) 744, 971
BlsI GCNGC 2 cut(s) 745, 972
Bme1390I CCNGG 1 cut(s) 991
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 466, 664
BmrFI CCNGG 1 cut(s) 991
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 747
BpiI GAAGAC 2 cut(s) 488, 955
BsaJI CCNNGG 2 cut(s) 910, 989
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bse1I ACTGG 2 cut(s) 753, 1045
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 991
BseDI CCNNGG 2 cut(s) 910, 989
BseGI GGATG 2 cut(s) 16, 738
BseMII CTCAG 3 cut(s) 110, 201, 468
BseNI ACTGG 2 cut(s) 753, 1045
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 730, 957
BsgI GTGCAG 1 cut(s) 907
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 2 cut(s) 263, 799
Bsp1286I GDGCHC 2 cut(s) 46, 467
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 5 cut(s) 424, 566, 616, 709, 718
BspACI CCGC 1 cut(s) 736
BspCNI CTCAG 3 cut(s) 109, 202, 469
BspLI GGNNCC 2 cut(s) 466, 664
BspT107I GGYRCC 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 753, 1045
BssECI CCNNGG 2 cut(s) 910, 989
BssMI GATC 5 cut(s) 424, 566, 616, 709, 718
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 991
Bst4CI ACNGT 5 cut(s) 317, 324, 405, 614, 998
Bst6I CTCTTC 5 cut(s) 204, 599, 626, 777, 1046
BstAUI TGTACA 1 cut(s) 1017
BstC8I GCNNGC 2 cut(s) 918, 922
BstDEI CTNAG 4 cut(s) 96, 210, 477, 704
BstF5I GGATG 2 cut(s) 16, 738
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 5 cut(s) 427, 569, 619, 712, 721
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 5 cut(s) 424, 566, 616, 709, 718
BstNI CCWGG 1 cut(s) 991
BstNSI RCATGY 1 cut(s) 1043
BstSCI CCNGG 1 cut(s) 989
BstSFI CTRYAG 2 cut(s) 879, 997
BstV1I GCAGC 2 cut(s) 730, 957
BstV2I GAAGAC 2 cut(s) 488, 955
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
Bsu36I CCTNAGG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 16, 738
BtsIMutI CAGTG 1 cut(s) 994
Cac8I GCNNGC 2 cut(s) 918, 922
CaiI CAGNNNCTG 1 cut(s) 996
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 325, 451, 1018
CviAII CATG 7 cut(s) 138, 203, 440, 525, 600, 979, 1040
CviQI GTAC 3 cut(s) 325, 451, 1018
DdeI CTNAG 4 cut(s) 96, 210, 477, 704
DpnI GATC 5 cut(s) 426, 568, 618, 711, 720
DpnII GATC 5 cut(s) 424, 566, 616, 709, 718
DriI GACNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 5 cut(s) 204, 599, 626, 777, 1046
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 5 cut(s) 204, 599, 626, 777, 1046
Eco130I CCWWGG 1 cut(s) 910
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 989
EcoT14I CCWWGG 1 cut(s) 910
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 7 cut(s) 141, 206, 443, 528, 603, 982, 1043
FalI AAGNNNNNCTT 4 cut(s) 705, 737, 890, 922
FaqI GGGAC 1 cut(s) 239
FatI CATG 7 cut(s) 137, 202, 439, 524, 599, 978, 1039
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 744, 971
FokI GGATG 2 cut(s) 23, 745
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 2 cut(s) 744, 971
FspBI CTAG 2 cut(s) 36, 686
GlaI GCGC 1 cut(s) 747
GluI GCNGC 2 cut(s) 744, 971
HhaI GCGC 1 cut(s) 748
Hin1II CATG 7 cut(s) 141, 206, 443, 528, 603, 982, 1043
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 78, 863
HinfI GANTC 4 cut(s) 21, 103, 482, 696
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 6 cut(s) 119, 232, 320, 337, 473, 583
Hpy188I TCNGA 5 cut(s) 211, 269, 393, 571, 657
Hpy188III TCNNGA 1 cut(s) 713
Hpy8I GTNNAC 6 cut(s) 119, 232, 320, 337, 473, 583
HpyAV CCTTC 2 cut(s) 325, 655
HpyCH4III ACNGT 5 cut(s) 317, 324, 405, 614, 998
HpyCH4V TGCA 2 cut(s) 797, 924
HpyF3I CTNAG 4 cut(s) 96, 210, 477, 704
Hsp92II CATG 7 cut(s) 141, 206, 443, 528, 603, 982, 1043
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 424, 566, 616, 709, 718
LmnI GCTCC 4 cut(s) 358, 470, 753, 978
Lsp1109I GCAGC 2 cut(s) 730, 957
LweI GCATC 1 cut(s) 723
MaeI CTAG 2 cut(s) 36, 686
MaeIII GTNAC 2 cut(s) 608, 820
MalI GATC 5 cut(s) 426, 568, 618, 711, 720
MboI GATC 5 cut(s) 424, 566, 616, 709, 718
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 2 cut(s) 46, 467
MluCI AATT 5 cut(s) 89, 303, 501, 649, 777
MlyI GAGTC 2 cut(s) 112, 491
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 7 cut(s) 8, 137, 217, 472, 778, 887, 1047
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 4 cut(s) 26, 518, 537, 575
MslI CAYNNNNRTG 2 cut(s) 136, 668
MspA1I CMGCKG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 991
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 263, 799
MvaI CCWGG 1 cut(s) 991
NdeI CATATG 1 cut(s) 345
NdeII GATC 5 cut(s) 424, 566, 616, 709, 718
NlaIII CATG 7 cut(s) 141, 206, 443, 528, 603, 982, 1043
NlaIV GGNNCC 2 cut(s) 466, 664
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 1 cut(s) 1043
PctI GAATGC 2 cut(s) 263, 799
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 2 cut(s) 21, 696
PkrI GCNGC 2 cut(s) 745, 972
PleI GAGTC 2 cut(s) 111, 490
PpsI GAGTC 2 cut(s) 111, 490
Psp6I CCWGG 1 cut(s) 989
PspGI CCWGG 1 cut(s) 989
PspN4I GGNNCC 2 cut(s) 466, 664
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 3 cut(s) 326, 452, 1019
RsaNI GTAC 3 cut(s) 325, 451, 1018
RseI CAYNNNNRTG 2 cut(s) 136, 668
SaqAI TTAA 4 cut(s) 26, 518, 537, 575
SatI GCNGC 2 cut(s) 744, 971
Sau3AI GATC 5 cut(s) 424, 566, 616, 709, 718
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 112, 491
ScrFI CCNGG 1 cut(s) 991
SduI GDGCHC 2 cut(s) 46, 467
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 2 cut(s) 879, 997
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 136, 668
Sse9I AATT 5 cut(s) 89, 303, 501, 649, 777
SsiI CCGC 1 cut(s) 736
SspMI CTAG 2 cut(s) 36, 686
StyD4I CCNGG 1 cut(s) 989
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 5 cut(s) 317, 324, 405, 614, 998
TaqI TCGA 1 cut(s) 427
TaqII GACCGA 1 cut(s) 249
TasI AATT 5 cut(s) 89, 303, 501, 649, 777
TatI WGTACW 1 cut(s) 1017
TfiI GAWTC 2 cut(s) 21, 696
Tru1I TTAA 4 cut(s) 26, 518, 537, 575
Tru9I TTAA 4 cut(s) 26, 518, 537, 575
TscAI CASTG 1 cut(s) 1001
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 2 cut(s) 743, 970
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 5 cut(s) 166, 191, 362, 940, 995
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 1 cut(s) 1043
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 2 cut(s) 36, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.