Rh5AG114900

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005969
Physical Location & Seq
Forward (+)
10671392 .. 10674979
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG114900.1

Sequence Viewer

Length: 801 bp
ATGGAAGTGGATGGAGGAAGAATCTTAAAAGTATCTAGTGGTGCTCAATCTATACCACGACATTCCAGAAAACATAAGGCTTTCTATCAATTTACTCAGCAGAGTCTCCCTGCTTGTAAACCTGTCCTCACACCAGCATGGGTGATTACTACATTTTTATTGATGGGTGTCATTTTCATACCTATTGGGCTTATTACTCTTCATGCCTCTGAGAATGTTGTTGAAATAGTGGACCGATATGATACTGAATGTGTCCCAGAAGCATTCAGAAGCAATAAGGTGGCATATATCAAAGATAACTCGATTCCCAAAAACTGTTCTCGGTACTTGAAGGTCTACAAGCATATGAAAGCTCCAATAAATATCTACTATCAGCTTGATAACTACTTTCAGAACCACAGACAGTATGTCAAAAGTAAAAATGATCGACAGCTTTTACATGGATTGGGGTACAATGACACAGGCTCCTGTAAACCTGAGGAGTCCAACAATGGTCTTTCAATTGTTCCTTGTGGTTTAATAGCATGGAGTTTGTTTAATGATACATATACTCTTATTCGTGGAAGATCAGAGTTAAAGGTCAACAGGAAGAACATAGCATGGAAGAGTGACCGTGATCACAAGTTTGGGAAGGGTGTATATCCCTTCAATTTTCAGAACGGCACCTTGATGGGTGGTGGAAAGCTACACCCAAGAATCCCCGTAAGTATTACTACTGTACAGAAATCTATTGAATTTTTCCTTTCTGCTCCTATACCCTTGAATATGATACCACCACATTTGTGCAAGTATAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

266

Amino Acids

30.22

Weight (kDa)

9.57

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 67 - 214 1.6e-40 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 3 cut(s) 326, 452, 720
AgsI TTSAA 6 cut(s) 224, 331, 501, 649, 734, 763
AhdI GACNNNNNGTC 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 781
AluBI AGCT 4 cut(s) 353, 376, 433, 685
AluI AGCT 4 cut(s) 353, 376, 433, 685
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 477
BanI GGYRCC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 3 cut(s) 5, 157, 664
BceAI ACGGC 1 cut(s) 676
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 466, 664
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bse21I CCTNAGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 110, 201, 468
BseRI GAGGAG 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 3 cut(s) 424, 566, 616
BspCNI CTCAG 3 cut(s) 109, 202, 469
BspLI GGNNCC 2 cut(s) 466, 664
BspT107I GGYRCC 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 718
BssMI GATC 3 cut(s) 424, 566, 616
Bst4CI ACNGT 4 cut(s) 317, 405, 614, 718
Bst6I CTCTTC 2 cut(s) 204, 599
BstAUI TGTACA 1 cut(s) 718
BstDEI CTNAG 3 cut(s) 96, 210, 477
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 3 cut(s) 427, 569, 619
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 424, 566, 616
Bsu36I CCTNAGG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 325, 451, 719
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 5 cut(s) 138, 203, 440, 525, 600
CviJI RGCY 7 cut(s) 80, 190, 353, 376, 433, 465, 685
CviKI_1 RGCY 7 cut(s) 80, 190, 353, 376, 433, 465, 685
CviQI GTAC 3 cut(s) 325, 451, 719
DdeI CTNAG 3 cut(s) 96, 210, 477
DpnI GATC 3 cut(s) 426, 568, 618
DpnII GATC 3 cut(s) 424, 566, 616
DriI GACNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 204, 599
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 2 cut(s) 204, 599
Eco47I GGWCC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 477
FaeI CATG 5 cut(s) 141, 206, 443, 528, 603
FaqI GGGAC 1 cut(s) 239
FatI CATG 5 cut(s) 137, 202, 439, 524, 599
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 336
FokI GGATG 1 cut(s) 23
FspBI CTAG 1 cut(s) 36
Hin1II CATG 5 cut(s) 141, 206, 443, 528, 603
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 5 cut(s) 21, 103, 304, 482, 696
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 5 cut(s) 119, 232, 337, 473, 583
Hpy188I TCNGA 5 cut(s) 211, 269, 393, 571, 657
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 5 cut(s) 119, 232, 337, 473, 583
HpyAV CCTTC 3 cut(s) 325, 625, 655
HpyCH4III ACNGT 4 cut(s) 317, 405, 614, 718
HpyCH4V TGCA 1 cut(s) 786
HpyF3I CTNAG 3 cut(s) 96, 210, 477
Hsp92II CATG 5 cut(s) 141, 206, 443, 528, 603
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 424, 566, 616
LmnI GCTCC 3 cut(s) 358, 470, 754
LpnPI CCDG 9 cut(s) 79, 123, 135, 147, 270, 447, 481, 489, 571
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 608
MalI GATC 3 cut(s) 426, 568, 618
MboI GATC 3 cut(s) 424, 566, 616
MboII GAAGA 5 cut(s) 30, 191, 576, 601, 616
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 89, 501, 649, 734
MlyI GAGTC 2 cut(s) 112, 491
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 4 cut(s) 8, 137, 217, 472
MseI TTAA 5 cut(s) 26, 518, 537, 575, 799
MslI CAYNNNNRTG 3 cut(s) 136, 668, 781
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 345
NdeII GATC 3 cut(s) 424, 566, 616
NlaIII CATG 5 cut(s) 141, 206, 443, 528, 603
NlaIV GGNNCC 2 cut(s) 466, 664
NmuCI GTSAC 1 cut(s) 608
OliI CACNNNNGTG 1 cut(s) 781
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 3 cut(s) 21, 304, 696
PleI GAGTC 2 cut(s) 111, 490
PpsI GAGTC 2 cut(s) 111, 490
PspN4I GGNNCC 2 cut(s) 466, 664
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 3 cut(s) 326, 452, 720
RsaNI GTAC 3 cut(s) 325, 451, 719
RseI CAYNNNNRTG 3 cut(s) 136, 668, 781
SaqAI TTAA 5 cut(s) 26, 518, 537, 575, 799
Sau3AI GATC 3 cut(s) 424, 566, 616
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 112, 491
SduI GDGCHC 1 cut(s) 46
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 3 cut(s) 136, 668, 781
Sse9I AATT 4 cut(s) 89, 501, 649, 734
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 4 cut(s) 317, 405, 614, 718
TaqI TCGA 2 cut(s) 302, 427
TaqII GACCGA 1 cut(s) 249
TasI AATT 4 cut(s) 89, 501, 649, 734
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 3 cut(s) 21, 304, 696
Tru1I TTAA 5 cut(s) 26, 518, 537, 575, 799
Tru9I TTAA 5 cut(s) 26, 518, 537, 575, 799
TseFI GTSAC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 3 cut(s) 166, 191, 362
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.