Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000120.1

Orthogroup ID

OG0005969

Physical Location & Seq

Genomic Coordinates Forward (+)

20282 .. 23445

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000120.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atggaagtggatggaggaagaatcttaaaagtatctagtggtgctcaatctataccacgacattccagaaaacataaggctttctatcaatttactcagcagagtctccctgcttgtaaacctgtcctcacaccagcatgggtgattactacatttttattgatgggtgtcattttcatacctattgggcttattactcttcatgcctctgagaatgttgttgaaatagtggaccgatatgatactgaatgtgtcccagaagcattcagaagcaataaggtggcatatatcaaagataactcgattcccaaaaactgttctcggtacttgaaggtctacaagcatatgaaagctccaataaatatctactatcagcttgataactactttcagaaccacagacagtatgtcaaaagtaaaaatgatcgacagcttttacatggattggggtacaatgacacaggctcctgtaaacctgaggagtccaacaatggtctttcaattgttccttgtggtttaatagcatggagtttgtttaatgatacatatactcttattcgtggaagatcagagttaaaggtcaacaggaagaacatagcatggaagagtgaccgtgatcacaagtttgggaagggtgtatatcccttcaattttcagaacggcaccttgatgggtggtggaaagctacacccaagaatccctctaagcgatcaagaagatcttattgtatggatgcggacagctgcgctccccagtttccaagcttattctttcaacaacaggctggttaggaggaaagaacaacttccttgggcttgcctgcacttctgttggttcaagttccatattcatctctattgtcttcttgctgctccacatgaaaaatcccaggattctataattgctgaaatgggttaccttctcaagtttgccctgctggctgtcagactcattcggcactgtagggaaacaactttttggtacatcttggaacaacaaaagcatgtccagttgaagaggcgatggtactatatgcgtagtttggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

349

Amino Acids

40.75

Weight (kDa)

9.58

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46150 AT5G46150 AT5G46150 AT5G46150
fragaria_vesca	FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160
malus_domestica	MD05G1280600.v1.1
prunus_persica	Prupe.4G084400_v2.0.a1
pyrus_communis	pycom05g26090
rosa_chinensis	RchiOBHm_Chr5g0014591
rosa_laevigata	RLG00000032131
rosa_multiflora	Rmu_sc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061890
rosa_rugosa	Rorug05G0019700 Rorug05G0019800
rosa_samantha	Rh5AG114900 Rh5BG111800 Rh5CG123300 Rh5DG111200
rosa_wichuraiana	Rw5G009950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	1 cut(s)	736
AfaI	GTAC	4 cut(s)	326, 452, 983, 1028
AgsI	TTSAA	7 cut(s)	224, 331, 501, 649, 775, 838, 1015
AhdI	GACNNNNNGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	888
AluBI	AGCT	6 cut(s)	353, 376, 433, 685, 743, 764
AluI	AGCT	6 cut(s)	353, 376, 433, 685, 743, 764
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	743, 869
Asp700I	GAANNNNTTC	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	730, 856
BccI	CCATC	4 cut(s)	5, 157, 664, 1017
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	890
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	961
BglI	GCCNNNNNGGC	1 cut(s)	938
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	2 cut(s)	744, 870
BlsI	GCNGC	2 cut(s)	745, 871
Bme1390I	CCNGG	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	466, 664
BmrFI	CCNGG	1 cut(s)	890
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	1 cut(s)	723
BmuI	ACTGGG	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	908
BsaJI	CCNNGG	2 cut(s)	809, 888
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bse1I	ACTGG	2 cut(s)	753, 1009
Bse21I	CCTNAGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	890
BseDI	CCNNGG	2 cut(s)	809, 888
BseGI	GGATG	2 cut(s)	16, 738
BseMII	CTCAG	3 cut(s)	110, 201, 468
BseNI	ACTGG	2 cut(s)	753, 1009
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	730, 856
BsgI	GTGCAG	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	424, 566, 616, 709, 718
BspACI	CCGC	1 cut(s)	736
BspCNI	CTCAG	3 cut(s)	109, 202, 469
BspLI	GGNNCC	2 cut(s)	466, 664
BspT107I	GGYRCC	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	753, 1009
BssECI	CCNNGG	2 cut(s)	809, 888
BssMI	GATC	5 cut(s)	424, 566, 616, 709, 718
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	4 cut(s)	317, 405, 614, 962
Bst6I	CTCTTC	3 cut(s)	204, 599, 1010
BstC8I	GCNNGC	3 cut(s)	817, 821, 939
BstDEI	CTNAG	4 cut(s)	96, 210, 477, 704
BstEII	GGTNACC	1 cut(s)	914
BstF5I	GGATG	2 cut(s)	16, 738
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	5 cut(s)	427, 569, 619, 712, 721
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	424, 566, 616, 709, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	938
BstNI	CCWGG	1 cut(s)	890
BstNSI	RCATGY	1 cut(s)	1007
BstPI	GGTNACC	1 cut(s)	914
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	1 cut(s)	961
BstV1I	GCAGC	2 cut(s)	730, 856
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	1036
BtsCI	GGATG	2 cut(s)	16, 738
BtsIMutI	CAGTG	1 cut(s)	958
Cac8I	GCNNGC	3 cut(s)	817, 821, 939
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	325, 451, 982, 1027
CviAII	CATG	7 cut(s)	138, 203, 440, 525, 600, 878, 1004
CviQI	GTAC	4 cut(s)	325, 451, 982, 1027
DdeI	CTNAG	4 cut(s)	96, 210, 477, 704
DpnI	GATC	5 cut(s)	426, 568, 618, 711, 720
DpnII	GATC	5 cut(s)	424, 566, 616, 709, 718
DriI	GACNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	204, 599, 1010
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	3 cut(s)	204, 599, 1010
Eco130I	CCWWGG	1 cut(s)	809
Eco47I	GGWCC	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	914
EcoO65I	GGTNACC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	888
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	7 cut(s)	141, 206, 443, 528, 603, 881, 1007
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 789, 821
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	7 cut(s)	137, 202, 439, 524, 599, 877, 1003
FauNDI	CATATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	744, 870
FokI	GGATG	2 cut(s)	23, 745
Fsp4HI	GCNGC	2 cut(s)	744, 870
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	2 cut(s)	744, 870
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	7 cut(s)	141, 206, 443, 528, 603, 881, 1007
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	7 cut(s)	21, 103, 304, 482, 696, 893, 948
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	5 cut(s)	119, 232, 337, 473, 583
Hpy188I	TCNGA	6 cut(s)	211, 269, 393, 571, 657, 947
Hpy188III	TCNNGA	2 cut(s)	66, 713
Hpy8I	GTNNAC	5 cut(s)	119, 232, 337, 473, 583
HpyAV	CCTTC	4 cut(s)	325, 625, 655, 929
HpyCH4III	ACNGT	4 cut(s)	317, 405, 614, 962
HpyCH4V	TGCA	1 cut(s)	823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	938
HpyF3I	CTNAG	4 cut(s)	96, 210, 477, 704
Hsp92II	CATG	7 cut(s)	141, 206, 443, 528, 603, 881, 1007
HspAI	GCGC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	424, 566, 616, 709, 718
LmnI	GCTCC	4 cut(s)	358, 470, 753, 877
Lsp1109I	GCAGC	2 cut(s)	730, 856
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	608, 914
MalI	GATC	5 cut(s)	426, 568, 618, 711, 720
MboI	GATC	5 cut(s)	424, 566, 616, 709, 718
MboII	GAAGA	8 cut(s)	30, 191, 576, 601, 616, 728, 854, 1027
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	89, 501, 649, 900
MlyI	GAGTC	3 cut(s)	112, 491, 942
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	7 cut(s)	8, 137, 217, 472, 711, 786, 1011
MroXI	GAANNNNTTC	1 cut(s)	804
MseI	TTAA	4 cut(s)	26, 518, 537, 575
MslI	CAYNNNNRTG	2 cut(s)	136, 668
MspA1I	CMGCKG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	890
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	1 cut(s)	938
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	5 cut(s)	424, 566, 616, 709, 718
NlaIII	CATG	7 cut(s)	141, 206, 443, 528, 603, 881, 1007
NlaIV	GGNNCC	2 cut(s)	466, 664
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	4 cut(s)	21, 304, 696, 893
PkrI	GCNGC	2 cut(s)	745, 871
PleI	GAGTC	3 cut(s)	111, 490, 942
PpsI	GAGTC	3 cut(s)	111, 490, 942
Psp6I	CCWGG	1 cut(s)	888
PspEI	GGTNACC	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	2 cut(s)	466, 664
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	4 cut(s)	326, 452, 983, 1028
RsaNI	GTAC	4 cut(s)	325, 451, 982, 1027
RseI	CAYNNNNRTG	2 cut(s)	136, 668
SaqAI	TTAA	4 cut(s)	26, 518, 537, 575
SatI	GCNGC	2 cut(s)	744, 870
Sau3AI	GATC	5 cut(s)	424, 566, 616, 709, 718
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	3 cut(s)	112, 491, 942
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	961
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	136, 668
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	4 cut(s)	89, 501, 649, 900
SsiI	CCGC	1 cut(s)	736
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	888
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	317, 405, 614, 962
TaqI	TCGA	2 cut(s)	302, 427
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	89, 501, 649, 900
TfiI	GAWTC	4 cut(s)	21, 304, 696, 893
Tru1I	TTAA	4 cut(s)	26, 518, 537, 575
Tru9I	TTAA	4 cut(s)	26, 518, 537, 575
TscAI	CASTG	1 cut(s)	965
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	743, 869
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	166, 191, 362, 839, 894
TspRI	CASTG	1 cut(s)	965
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	1007
XmiI	GTMKAC	1 cut(s)	336
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.