Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005969

Physical Location & Seq

Genomic Coordinates Reverse (-)

1323846 .. 1325197

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTCTTCTTGGTGCAATTTGTTAGGATCATGGACAAGGCTAGGGCTAGGAACTACGTTTTTGATTTACTTCTCATAGGGTTATTCCTAGTCCTTTTTCAGATGACACAAAGACTATATCGGTATATCAAAATCCTTAAACAAGAGTACTTTCTTTTTCTTGAGAAAAAAGACATCCAATTGCAGTTGTGGCACTCAAGACTCAAACAGCTTGAGTATGAAGTCAAGATTGAAACCAAAGACCTTAATGCTGCAGAAGACAACATTCTTTCTCTAAAGAAACAATTTGAAGAGTTTTGTCTCGAGTATGATCGGGTACTTGCAGAAAACTACACTTTAAGGAACCGGTTGCAGTCATCGGATATGAGACTCATACAGCTTGAAAATGAATACGAGAGAAAGACAAAAGACGCTGTTAATGCTGCAGAAGAGGAAAGGATTGCTCGAAGTGAAGGTTTTCTTCTCGAATGTAATCGTTTAATTAAGGAAAACAAAATGTTAAGAAATCAATTGATGTCCTTGAACTGGAGATTGTCACATTTAGCTAGCAAGAGGAAATCAAGTAATTCTTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

192

Amino Acids

23.23

Weight (kDa)

9.26

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46150 AT5G46150 AT5G46150 AT5G46150
fragaria_vesca	FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160
malus_domestica	MD05G1280600.v1.1
prunus_persica	Prupe.4G084400_v2.0.a1
pyrus_communis	pycom05g26090
rosa_chinensis	RchiOBHm_Chr5g0014591
rosa_laevigata	RLG00000032131
rosa_multiflora	Rmu_sc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061890
rosa_rugosa	Rorug05G0019700 Rorug05G0019800
rosa_samantha	Rh5AG114900 Rh5BG111800 Rh5CG123300 Rh5DG111200
rosa_wichuraiana	Rw5G009950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	149, 318
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	233, 290, 383, 523
AluBI	AGCT	3 cut(s)	211, 379, 545
AluI	AGCT	3 cut(s)	211, 379, 545
Alw26I	GTCTC	2 cut(s)	305, 361
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	251, 422
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	456
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	238, 409
BcoDI	GTCTC	2 cut(s)	305, 361
BfaI	CTAG	4 cut(s)	42, 48, 89, 546
BfmI	CTRYAG	2 cut(s)	252, 423
BisI	GCNGC	2 cut(s)	252, 423
BlsI	GCNGC	2 cut(s)	253, 424
BmcAI	AGTACT	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	344
BmtI	GCTAGC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	3 cut(s)	181, 182, 233
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	238, 409
BshTI	ACCGGT	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	305, 361
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	27, 310
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	2 cut(s)	256, 427
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	345
BssMI	GATC	2 cut(s)	27, 310
Bst6I	CTCTTC	2 cut(s)	285, 423
BstC8I	GCNNGC	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	30, 313
BstMAI	GTCTC	2 cut(s)	305, 361
BstMBI	GATC	2 cut(s)	27, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 419
BstSFI	CTRYAG	2 cut(s)	252, 423
BstV1I	GCAGC	2 cut(s)	238, 409
BstV2I	GAAGAC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	345
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	148, 317
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	5 cut(s)	41, 47, 211, 379, 545
CviKI_1	RGCY	5 cut(s)	41, 47, 211, 379, 545
CviQI	GTAC	2 cut(s)	148, 317
DpnI	GATC	2 cut(s)	29, 312
DpnII	GATC	2 cut(s)	27, 310
Eam1104I	CTCTTC	2 cut(s)	285, 423
EarI	CTCTTC	2 cut(s)	285, 423
Eco88I	CYCGRG	1 cut(s)	302
FaeI	CATG	1 cut(s)	34
FaiI	YATR	8 cut(s)	32, 77, 118, 126, 219, 309, 365, 374
FalI	AAGNNNNNCTT	3 cut(s)	444, 476, 553
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	252, 423
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	252, 423
FspBI	CTAG	4 cut(s)	42, 48, 89, 546
GluI	GCNGC	2 cut(s)	252, 423
GsuI	CTGGAG	1 cut(s)	547
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	2 cut(s)	201, 369
HpaII	CCGG	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	102, 361
Hpy188III	TCNNGA	5 cut(s)	161, 198, 226, 302, 464
HpyAV	CCTTC	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	6 cut(s)	16, 184, 254, 323, 352, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 419
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	27, 310
LpnPI	CCDG	2 cut(s)	359, 511
Lsp1109I	GCAGC	2 cut(s)	238, 409
MaeI	CTAG	4 cut(s)	42, 48, 89, 546
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	2 cut(s)	29, 312
MboI	GATC	2 cut(s)	27, 310
MboII	GAAGA	4 cut(s)	269, 302, 440, 452
MfeI	CAATTG	2 cut(s)	179, 509
MluCI	AATT	6 cut(s)	17, 179, 284, 480, 509, 565
MlyI	GAGTC	2 cut(s)	195, 363
MnlI	CCTC	2 cut(s)	424, 546
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	8 cut(s)	138, 246, 338, 417, 479, 483, 500, 577
MspI	CCGG	1 cut(s)	346
MunI	CAATTG	2 cut(s)	179, 509
MwoI	GCNNNNNNNGC	2 cut(s)	190, 419
NdeII	GATC	2 cut(s)	27, 310
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	534
PacI	TTAATTAA	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	456
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	253, 424
PleI	GAGTC	2 cut(s)	195, 363
PpsI	GAGTC	2 cut(s)	195, 363
PspN4I	GGNNCC	1 cut(s)	344
PstI	CTGCAG	2 cut(s)	256, 427
RsaI	GTAC	2 cut(s)	149, 318
RsaNI	GTAC	2 cut(s)	148, 317
SaqAI	TTAA	8 cut(s)	138, 246, 338, 417, 479, 483, 500, 577
SatI	GCNGC	2 cut(s)	252, 423
Sau3AI	GATC	2 cut(s)	27, 310
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	2 cut(s)	195, 363
SetI	ASST	6 cut(s)	60, 213, 246, 381, 457, 547
SfcI	CTRYAG	2 cut(s)	252, 423
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	4 cut(s)	161, 196, 212, 302
SmoI	CTYRAG	4 cut(s)	161, 196, 212, 302
Sse9I	AATT	6 cut(s)	17, 179, 284, 480, 509, 565
SspMI	CTAG	4 cut(s)	42, 48, 89, 546
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	303, 445, 465
TasI	AATT	6 cut(s)	17, 179, 284, 480, 509, 565
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	8 cut(s)	138, 246, 338, 417, 479, 483, 500, 577
Tru9I	TTAA	8 cut(s)	138, 246, 338, 417, 479, 483, 500, 577
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	251, 422
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	234, 402
XhoI	CTCGAG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	4 cut(s)	42, 48, 89, 546
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.