Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005969

Physical Location & Seq

Genomic Coordinates Reverse (-)

27341001 .. 27344728

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGTGGATGGAAGTGCCTCAACAGTTTCTAGGGGTGCTCAATCAATTCCACGGCAAACCAGGCGACAGAAAGCTTTTTATCAATTTCAACAGCAGAGTCTACCGGCTTGTAAACCCGTCCTCACACCAGCATGGGTGATTACCACATTTTTATTGATCGGGGCCATTTTCATACCCGCGGGGCTTATTACTCTTAACGTTGTGGAAATTGTGGACCAATATGATGCGGATTGTGTACCAGAGGCATTCAAGAGTAACAAGGTGGCATATATCAAAGATAACTTAATTCCTAAAAACTGTTCTCGGTACTTGAAGGTTTACAAGGACATGAAAGCTCCAATTTATATCTACTACCAGCTTGATAACTACTATCAAAACCACCGACGGTATGTCAAAAGTAGAAGTGATCAGCAGCTTTTACATGGATTGGGGCACAATGACACAAGCTCCTGTCAACCTGAGGAGTCCAACAAGGATCTTCCCATTGTTCCTTGTGGCTTGATAGCATGGAGTTTGTTTAATGATACATATACTTTTATTCGCGGAAGATCAGAATTAAAAGTCAACAGGAAAGACATAGCTTGGAAGAGCGACCGTGATCACAAATTTGGGAAGCATGTATATCCCTTTAATTTCCAGAACGGGACCTTGATTGGTGGTGCAAAGCTAGATCCAAAAATTCCTCTAAGCGATCAAGAAGACCTTATTGTATGGATGCGGACAGCTGCGCTTCCCAGTTTCCGGAAGCTGTATGGTAGAATTGAAGAGGATTTGGATGCAGATGATGTTCTAGTAGTGAATCTAACGAACAACTACAATACTTACAGTTTTGGTGGAAAAAAGAAGCTTATCCTTTCAACATCAAGTTGGTTAGGAGGAAAGAACGACTTCCTTGGACTTGCCTACACTTTTGTTGGTTCAACTTCCATCTTCATTTCTGTTGTCTTCTTGTTGCTGCATGTGAAATATCCAAGAACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

329

Amino Acids

37.35

Weight (kDa)

9.14

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46150 AT5G46150 AT5G46150 AT5G46150
fragaria_vesca	FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160 FvH4_3g05160
malus_domestica	MD05G1280600.v1.1
prunus_persica	Prupe.4G084400_v2.0.a1
pyrus_communis	pycom05g26090
rosa_chinensis	RchiOBHm_Chr5g0014591
rosa_laevigata	RLG00000032131
rosa_multiflora	Rmu_sc0000120.1_g000006
rosa_roxburghii	Rroxscaffold_1G00061890
rosa_rugosa	Rorug05G0019700 Rorug05G0019800
rosa_samantha	Rh5AG114900 Rh5BG111800 Rh5CG123300 Rh5DG111200
rosa_wichuraiana	Rw5G009950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	2 cut(s)	182, 546
AccIII	TCCGGA	1 cut(s)	744
AciI	CCGC	5 cut(s)	180, 182, 230, 546, 721
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	486, 668
AcsI	RAATTY	2 cut(s)	608, 681
AfaI	GTAC	2 cut(s)	240, 311
AfiI	CCNNNNNNNGG	1 cut(s)	744
AgsI	TTSAA	6 cut(s)	92, 253, 316, 767, 861, 924
AhdI	GACNNNNNGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	486, 668
Aor13HI	TCCGGA	1 cut(s)	744
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	415, 728, 958
ApoI	RAATTY	2 cut(s)	608, 681
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	3 cut(s)	165, 217, 648
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	217, 648
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	708, 940
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	427, 715, 945
BccI	CCATC	2 cut(s)	5, 938
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	2 cut(s)	409, 601
BfaI	CTAG	3 cut(s)	33, 671, 794
BisI	GCNGC	3 cut(s)	416, 729, 959
BlsI	GCNGC	3 cut(s)	417, 730, 960
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	217, 648
BmeRI	GACNNNNNGTC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	165, 217, 648
BmiI	GGNNCC	2 cut(s)	166, 649
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	3 cut(s)	217, 708, 769
BmuI	ACTGGG	1 cut(s)	732
BpiI	GAAGAC	2 cut(s)	708, 940
BsaJI	CCNNGG	3 cut(s)	53, 180, 895
BsaWI	WCCGGW	1 cut(s)	744
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	738
Bse21I	CCTNAGG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	53, 180, 895
BseGI	GGATG	3 cut(s)	16, 723, 784
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	427, 715, 945
Bsh1236I	CGCG	2 cut(s)	182, 546
Bsh1285I	CGRYCG	1 cut(s)	598
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	107, 745
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	43, 438
Bsp13I	TCCGGA	1 cut(s)	744
Bsp143I	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
BspACI	CCGC	5 cut(s)	180, 182, 230, 546, 721
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	454
BspEI	TCCGGA	1 cut(s)	744
BspFNI	CGCG	2 cut(s)	182, 546
BspLI	GGNNCC	2 cut(s)	166, 649
BspPI	GGATC	2 cut(s)	486, 668
BspQI	GCTCTTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	738
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	53, 180, 895
BssMI	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
BssT1I	CCWWGG	1 cut(s)	895
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	5 cut(s)	28, 302, 390, 599, 830
Bst6I	CTCTTC	2 cut(s)	584, 762
BstDEI	CTNAG	2 cut(s)	462, 689
BstDSI	CCRYGG	2 cut(s)	53, 180
BstF5I	GGATG	3 cut(s)	16, 723, 784
BstFNI	CGCG	2 cut(s)	182, 546
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	7 cut(s)	162, 412, 481, 554, 604, 676, 697
BstMBI	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
BstMCI	CGRYCG	1 cut(s)	598
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	2 cut(s)	623, 965
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	2 cut(s)	182, 546
BstV1I	GCAGC	3 cut(s)	427, 715, 945
BstV2I	GAAGAC	2 cut(s)	708, 940
BstX2I	RGATCY	2 cut(s)	478, 673
BstYI	RGATCY	2 cut(s)	478, 673
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	53, 180
BtsCI	GGATG	3 cut(s)	16, 723, 784
CfoI	GCGC	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	165, 217, 648
Cfr42I	CCGCGG	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	239, 310
CviAII	CATG	6 cut(s)	135, 331, 425, 510, 620, 962
CviQI	GTAC	2 cut(s)	239, 310
DdeI	CTNAG	2 cut(s)	462, 689
DpnI	GATC	7 cut(s)	161, 411, 480, 553, 603, 675, 696
DpnII	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
DriI	GACNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	584, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	392
EarI	CTCTTC	2 cut(s)	584, 762
Eco130I	CCWWGG	1 cut(s)	895
Eco47I	GGWCC	2 cut(s)	217, 648
Eco81I	CCTNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	6 cut(s)	138, 334, 428, 513, 623, 965
FalI	AAGNNNNNCTT	4 cut(s)	690, 722, 875, 907
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	6 cut(s)	134, 330, 424, 509, 619, 961
FauI	CCCGC	2 cut(s)	175, 187
FbaI	TGATCA	2 cut(s)	409, 601
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	416, 729, 959
FokI	GGATG	3 cut(s)	23, 730, 791
Fsp4HI	GCNGC	3 cut(s)	416, 729, 959
FspBI	CTAG	3 cut(s)	33, 671, 794
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	3 cut(s)	416, 729, 959
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	107, 745
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	138, 334, 428, 513, 623, 965
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	2 cut(s)	458, 568
HindII	GTYRAC	2 cut(s)	458, 568
HindIII	AAGCTT	2 cut(s)	75, 848
HinfI	GANTC	3 cut(s)	100, 467, 802
HpaII	CCGG	2 cut(s)	107, 745
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	7 cut(s)	104, 116, 217, 239, 322, 458, 568
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	4 cut(s)	253, 640, 698, 745
Hpy8I	GTNNAC	7 cut(s)	104, 116, 217, 239, 322, 458, 568
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	5 cut(s)	28, 302, 390, 599, 830
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	665, 782, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	462, 689
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	138, 334, 428, 513, 623, 965
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	744
Ksp22I	TGATCA	2 cut(s)	409, 601
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
LguI	GCTCTTC	1 cut(s)	584
LmnI	GCTCC	2 cut(s)	343, 455
Lsp1109I	GCAGC	3 cut(s)	427, 715, 945
LweI	GCATC	3 cut(s)	217, 708, 769
MaeI	CTAG	3 cut(s)	33, 671, 794
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	7 cut(s)	161, 411, 480, 553, 603, 675, 696
MboI	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
MboII	GAAGA	7 cut(s)	473, 561, 601, 713, 779, 925, 940
MflI	RGATCY	2 cut(s)	478, 673
MhlI	GDGCHC	2 cut(s)	43, 438
MlyI	GAGTC	2 cut(s)	109, 476
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	31, 134, 238, 457, 696, 763, 872
MroI	TCCGGA	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	6 cut(s)	198, 287, 522, 560, 633, 985
MslI	CAYNNNNRTG	1 cut(s)	133
MspA1I	CMGCKG	2 cut(s)	182, 728
MspI	CCGG	2 cut(s)	107, 745
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	182, 546
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
NlaIII	CATG	6 cut(s)	138, 334, 428, 513, 623, 965
NlaIV	GGNNCC	2 cut(s)	166, 649
NspI	RCATGY	2 cut(s)	623, 965
PciSI	GCTCTTC	1 cut(s)	584
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	3 cut(s)	417, 730, 960
PleI	GAGTC	2 cut(s)	108, 475
PpsI	GAGTC	2 cut(s)	108, 475
PpuMI	RGGWCCY	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	166, 649
PspPI	GGNCC	3 cut(s)	165, 217, 648
PspPPI	RGGWCCY	1 cut(s)	648
PsuI	RGATCY	2 cut(s)	478, 673
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	240, 311
RsaNI	GTAC	2 cut(s)	239, 310
RseI	CAYNNNNRTG	1 cut(s)	133
SacII	CCGCGG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	584
SaqAI	TTAA	6 cut(s)	198, 287, 522, 560, 633, 985
SatI	GCNGC	3 cut(s)	416, 729, 959
Sau3AI	GATC	7 cut(s)	159, 409, 478, 551, 601, 673, 694
Sau96I	GGNCC	3 cut(s)	165, 217, 648
SchI	GAGTC	2 cut(s)	109, 476
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	43, 438
SfaNI	GCATC	3 cut(s)	217, 708, 769
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	217, 648
SmiMI	CAYNNNNRTG	1 cut(s)	133
SsiI	CCGC	5 cut(s)	180, 182, 230, 546, 721
SspMI	CTAG	3 cut(s)	33, 671, 794
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	5 cut(s)	28, 302, 390, 599, 830
TaiI	ACGT	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	6 cut(s)	198, 287, 522, 560, 633, 985
Tru9I	TTAA	6 cut(s)	198, 287, 522, 560, 633, 985
TseI	GCWGC	3 cut(s)	415, 728, 958
TspDTI	ATGAA	3 cut(s)	163, 347, 925
VpaK11BI	GGWCC	2 cut(s)	217, 648
XapI	RAATTY	2 cut(s)	608, 681
XceI	RCATGY	2 cut(s)	623, 965
XmiI	GTMKAC	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	3 cut(s)	33, 671, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.