FvH4_3g05420

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011694
Physical Location & Seq
Forward (+)
3141833 .. 3142318
486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05420.t1

Sequence Viewer

Length: 240 bp
ATGGCAACAAAACCAGCTGAAGAACCTCCTGGATCCTTGAAATACCAGACATGGGTGTTAAAAGTCTCAATTCATTGTGAAGGCTGCAAAAAGAAAGTGAAGAAAGTTCTTCAAAGCATTGAAGGGGTTTACACTATTACGATTGATTCTCGGCTGCACAAGGTCACAGTGACTGGCAACGTGGAGGCAGAGACCTTGCTCAAGAAGCTGTTGAGGTCAAACAAGGACGTCGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

9.36

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 20 - 72 3.6e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011694)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27690
fragaria_vesca FvH4_2g25240 FvH4_3g05420
malus_domestica MD03G1282300.v1.1 MD11G1304000.v1.1
prunus_persica Prupe.8G257200_v2.0.a1
pyrus_communis pycom03g22310 pycom11g26560
rosa_chinensis RchiOBHm_Chr6g0293381
rosa_laevigata RLG00000011951
rosa_multiflora Rmu_sc0006269.1_g000028
rosa_roxburghii Rroxscaffold_7G00174210
rosa_rugosa Rorug06G0235000 Rorug06G0235100
rosa_samantha Rh6AG347900 Rh6BG355500 Rh6CG361600 Rh6DG348700
rosa_wichuraiana Rw6G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AclWI GGATC 2 cut(s) 27, 40
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 40, 113, 122
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 17, 208, 235
AluI AGCT 3 cut(s) 17, 208, 235
Alw26I GTCTC 2 cut(s) 70, 185
AlwI GGATC 2 cut(s) 27, 40
AlwNI CAGNNNCTG 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 84, 154
BamHI GGATCC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 71, 141
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 70, 185
BisI GCNGC 2 cut(s) 85, 155
BlsI GCNGC 2 cut(s) 86, 156
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 71, 141
BsgI GTGCAG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 70, 185
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 27, 40
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 178
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 228
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 70, 185
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 71, 141
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 173
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 17, 84, 154, 208, 235
CviKI_1 RGCY 5 cut(s) 17, 84, 154, 208, 235
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 54
FaiI YATR 1 cut(s) 52
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 85, 155
Fsp4HI GCNGC 2 cut(s) 85, 155
GluI GCNGC 2 cut(s) 85, 155
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 54
HinfI GANTC 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 74, 116
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 180, 228
HpyCH4V TGCA 2 cut(s) 87, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 180, 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 54
Kzo9I GATC 1 cut(s) 32
LpnPI CCDG 5 cut(s) 15, 27, 42, 59, 159
Lsp1109I GCAGC 2 cut(s) 71, 141
MaeII ACGT 2 cut(s) 180, 228
MaeIII GTNAC 2 cut(s) 163, 169
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 3 cut(s) 32, 101, 112
MflI RGATCY 1 cut(s) 32
MluCI AATT 1 cut(s) 69
MnlI CCTC 3 cut(s) 36, 178, 207
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 32
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 163, 169
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 2 cut(s) 86, 156
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 85, 155
Sau3AI GATC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 30
SetI ASST 9 cut(s) 19, 28, 165, 183, 197, 210, 218, 231, 237
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 183, 231
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 2 cut(s) 163, 169
TseI GCWGC 2 cut(s) 84, 154
Tsp45I GTSAC 2 cut(s) 163, 169
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 174
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.