Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Forward (+)

3264081 .. 3265962

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTGAACCTTAAGATGACAACTAAATACGGTGCAATGGCCTCAGCTGTCTTGGCCAGTATCTTGGTTGCAGGGGTTTATTTTGTTCGCGAACGTTCTTGGAGGAGGAAGGAAGATCCCCCAAAATTCATGAGGTCTATGTCCATGGCTGTCCTCCATGGAGGGAAGCTGGCCTTGAAGAGATTGCTAGAATACCATGAAGCTCGAGCAGACAAAGATGCATTATATCAAGCTGAATGTGACTTGAAGGCTCACCTTTTTACTAAGAAACGCCCTGATTACAAGAAGCTGCGGGTGATTGTTGCAAGGCTTGAGATGAGTGGAAAAGAAGCCGAGGCAGTGGGGATATTAGAGCAAGCAAGAACAAAGGCGAGAAATGAGGAAAAATGGCATGAAGTATATGAAACTGAGATGTTACTAGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATACGATTGCTTGAGTCATTTTGAAATCTCGGATGCAAGGCGGCCACTCTACAAGGCTATCATTTACATTATGTCGTCAAACCATGCCAGGGAAAAAATTATAGACGAGTGGAAACAATTTCACGACCTAAATCAGGCATTCCACTGTGAACCTTTGGAAGACGAGAGCTTGATAGAAGCTCAACTCCATAAACTCATTACAGACTTTAACGAGTTTGAGAAGGTCGTCAAGGTACTCAAAGAAGATATAATAGAGGCGCAAGCAAAGAGAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.95

Weight (kDa)

8.73

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	292, 505
AclI	AACGTT	1 cut(s)	94
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	54, 506
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	2 cut(s)	553, 598
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	178, 247, 488
AhlI	ACTAGT	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	551
AluBI	AGCT	7 cut(s)	47, 169, 203, 233, 289, 633, 644
AluI	AGCT	7 cut(s)	47, 169, 203, 233, 289, 633, 644
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	4 cut(s)	39, 54, 171, 506
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	460, 724
AsuHPI	GGTGA	4 cut(s)	16, 245, 307, 455
AvaI	CYCGRG	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	630
BbvCI	CCTCAGC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	553
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	2 cut(s)	188, 419
BfoI	RGCGCY	1 cut(s)	461
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	290, 506
BlsI	GCNGC	2 cut(s)	291, 507
Bme1390I	CCNGG	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	208, 487
BpiI	GAAGAC	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	332, 496
BsaJI	CCNNGG	4 cut(s)	144, 157, 333, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 598
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	553
BseDI	CCNNGG	4 cut(s)	144, 157, 333, 552
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	553, 598
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	57, 399
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	41, 56, 173, 508
BsiHKCI	CYCGRG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	553, 598
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	41, 56, 173, 508
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	2 cut(s)	144, 157
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	2 cut(s)	292, 505
BspANI	GGCC	4 cut(s)	41, 56, 173, 508
BspCNI	CTCAG	2 cut(s)	56, 400
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	129
BspPI	GGATC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	144, 157, 333, 552
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	144, 157
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	32, 611
Bst6I	CTCTTC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	171, 357, 726
BstDEI	CTNAG	3 cut(s)	43, 264, 408
BstDSI	CCRYGG	2 cut(s)	144, 157
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	2 cut(s)	460, 724
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	551
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	41, 56, 173, 508
BtgI	CCRYGG	2 cut(s)	144, 157
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 607
BtuMI	TCGCGA	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	171, 357, 726
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	2 cut(s)	460, 724
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	6 cut(s)	130, 145, 158, 197, 392, 548
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	3 cut(s)	43, 264, 408
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	54, 506
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	144, 157
Eco88I	CYCGRG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	144, 157
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	144, 157
FaeI	CATG	6 cut(s)	133, 148, 161, 200, 395, 551
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	6 cut(s)	129, 144, 157, 196, 391, 547
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	290, 506
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	290, 506
FspBI	CTAG	2 cut(s)	188, 419
GlaI	GCGC	2 cut(s)	459, 723
GluI	GCNGC	2 cut(s)	290, 506
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	4 cut(s)	41, 56, 173, 508
HhaI	GCGC	2 cut(s)	460, 724
Hin1II	CATG	6 cut(s)	133, 148, 161, 200, 395, 551
Hin6I	GCGC	2 cut(s)	458, 722
HinP1I	GCGC	2 cut(s)	458, 722
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	4 cut(s)	16, 245, 307, 455
Hpy166II	GTNNAC	2 cut(s)	7, 614
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	3 cut(s)	89, 130, 587
Hpy8I	GTNNAC	2 cut(s)	7, 614
HpyAV	CCTTC	4 cut(s)	103, 241, 448, 679
HpyCH4III	ACNGT	2 cut(s)	32, 611
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	35, 71, 221, 305, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	43, 264, 408
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	6 cut(s)	133, 148, 161, 200, 395, 551
HspAI	GCGC	2 cut(s)	458, 722
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	57, 70, 155, 288, 538, 565, 584
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	208, 487
MaeI	CTAG	2 cut(s)	188, 419
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	239, 414
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	125, 190, 635, 719
MflI	RGATCY	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	125, 561, 581
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	9 cut(s)	52, 96, 99, 126, 155, 164, 328, 373, 712
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	12, 672
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	2 cut(s)	144, 157
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	6 cut(s)	133, 148, 161, 200, 395, 551
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	239
NruI	TCGCGA	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	129
PctI	GAATGC	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	291, 507
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	90
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	12, 672
SatI	GCNGC	2 cut(s)	290, 506
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	208, 487
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	4 cut(s)	11, 204, 311, 475
SmoI	CTYRAG	4 cut(s)	11, 204, 311, 475
SpeI	ACTAGT	1 cut(s)	418
Sse9I	AATT	3 cut(s)	125, 561, 581
SsiI	CCGC	2 cut(s)	292, 505
SspMI	CTAG	2 cut(s)	188, 419
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	2 cut(s)	144, 157
TaaI	ACNGT	2 cut(s)	32, 611
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	125, 561, 581
TauI	GCSGC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	12, 672
Tru9I	TTAA	2 cut(s)	12, 672
TscAI	CASTG	2 cut(s)	345, 614
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	118, 213, 408, 417
TspRI	CASTG	2 cut(s)	345, 614
Vha464I	CTTAAG	1 cut(s)	11
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	204
XspI	CTAG	2 cut(s)	188, 419
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.