Rroxscaffold_1G00062520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004483
Physical Location & Seq
Forward (+)
84615960 .. 84617504
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062520.1

Sequence Viewer

Length: 741 bp
ATGGTGAACCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTCTTTGCCAGTATCTTTGTTGCAGGGGTTTATTTTGTTCGTGAACGTTCTCGGAGAAAGGAAGAGGCGCCCCCAAAACTCATGAGGTCTGTGTCCATGGCTGTCCTCCATGGAGGGAAGCTGGCCTTGAAGAGATTGCAAGATTATCATGGAGCTCGAGCAGACAAATGTGCACTGAATTTAGCTGAATGTGAGTTGAAGACTCAACTTTTTAGTGAGAAACGCTCTGATTACAAGAAGCTGCAGTTGATTGTTGCAAAGCTTGAGATGAGTGGAAAAGAAGCCGAGACAGTCGAGATATTAGAGAAAGCAAGAATAAAGGCGAAAAAGGAACAAAAATGGCATGAAGCATATGAAACGGAGATGTTACTAGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATGTGATTGCTTGAGTCATGAAGAGATCTCAGATGCAAGGCGACCACTCTACAAGGCCATCATTTACATTATGTCATCGTCAAAGCAGCCTGCCATAGATCAGTGGGAAAAATTTATCCAGCTGAATCAAGCATTCCACTGTGAACCCAGTTTGGAGAAAGAGAGCTTGGAAGAAGCTCAACTCCATAACCTCATTTCGGACTTTAAAGAGTTTGAGAAGGTCGTCAACGTACTCAAAGATGATATAACAGAGGCGCAAGCCAAGCAGAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

28.38

Weight (kDa)

8.62

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AclI AACGTT 1 cut(s) 94
AcsI RAATTY 2 cut(s) 226, 575
AcyI GRCGYC 2 cut(s) 41, 116
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 661
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 178, 247
AhlI ACTAGT 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 8 cut(s) 169, 203, 233, 289, 310, 586, 630, 641
AluI AGCT 8 cut(s) 169, 203, 233, 289, 310, 586, 630, 641
Alw21I GWGCWC 2 cut(s) 205, 223
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 2 cut(s) 171, 519
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 289, 550
ApoI RAATTY 2 cut(s) 226, 575
AspLEI GCGC 3 cut(s) 118, 460, 721
AsuHPI GGTGA 2 cut(s) 16, 455
AvaI CYCGRG 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 205, 223
BbvI GCAGC 2 cut(s) 276, 562
BccI CCATC 1 cut(s) 530
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 329
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 1 cut(s) 419
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 2 cut(s) 119, 461
BfrI CTTAAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 489
BisI GCNGC 2 cut(s) 290, 551
BlsI GCNGC 2 cut(s) 291, 552
BmeT110I CYCGRG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpuEI CTTGAG 2 cut(s) 332, 496
BsaHI GRCGYC 2 cut(s) 41, 116
BsaJI CCNNGG 2 cut(s) 144, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse1I ACTGG 2 cut(s) 57, 612
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 144, 157
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 57, 612
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 276, 562
BshFI GGCC 2 cut(s) 173, 521
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 205, 223
BsiHKCI CYCGRG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 2 cut(s) 173, 521
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 205, 223
Bsp143I GATC 2 cut(s) 489, 562
Bsp19I CCATGG 2 cut(s) 144, 157
BspANI GGCC 2 cut(s) 173, 521
BspCNI CTCAG 1 cut(s) 506
BspHI TCATGA 2 cut(s) 129, 481
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 57, 612
BssECI CCNNGG 2 cut(s) 144, 157
BssMI GATC 2 cut(s) 489, 562
BssNI GRCGYC 2 cut(s) 41, 116
BssT1I CCWWGG 2 cut(s) 144, 157
Bst4CI ACNGT 2 cut(s) 340, 605
Bst6I CTCTTC 3 cut(s) 105, 173, 480
BstACI GRCGYC 2 cut(s) 41, 116
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 171, 555, 723
BstDEI CTNAG 1 cut(s) 493
BstDSI CCRYGG 2 cut(s) 144, 157
BstH2I RGCGCY 2 cut(s) 119, 461
BstHHI GCGC 3 cut(s) 118, 460, 721
BstKTI GATC 2 cut(s) 492, 565
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 489, 562
BstMWI GCNNNNNNNGC 2 cut(s) 53, 727
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 276, 562
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 2 cut(s) 173, 521
BtgI CCRYGG 2 cut(s) 144, 157
BtsIMutI CAGTG 3 cut(s) 221, 572, 601
Cac8I GCNNGC 3 cut(s) 171, 555, 723
CciI TCATGA 2 cut(s) 129, 481
CfoI GCGC 3 cut(s) 118, 460, 721
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 695
CviAII CATG 6 cut(s) 130, 145, 158, 197, 392, 482
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 1 cut(s) 493
DinI GGCGCC 1 cut(s) 117
DpnI GATC 2 cut(s) 491, 564
DpnII GATC 2 cut(s) 489, 562
DraI TTTAAA 1 cut(s) 670
Eam1104I CTCTTC 3 cut(s) 105, 173, 480
EarI CTCTTC 3 cut(s) 105, 173, 480
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 144, 157
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 144, 157
EcoT38I GRGCYC 1 cut(s) 205
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 144, 157
FaeI CATG 6 cut(s) 133, 148, 161, 200, 395, 485
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 6 cut(s) 129, 144, 157, 196, 391, 481
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 290, 551
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 290, 551
FspBI CTAG 1 cut(s) 419
GlaI GCGC 3 cut(s) 117, 459, 720
GluI GCNGC 2 cut(s) 290, 551
HaeII RGCGCY 2 cut(s) 119, 461
HaeIII GGCC 2 cut(s) 173, 521
HgaI GACGC 1 cut(s) 30
HhaI GCGC 3 cut(s) 118, 460, 721
Hin1I GRCGYC 2 cut(s) 41, 116
Hin1II CATG 6 cut(s) 133, 148, 161, 200, 395, 485
Hin6I GCGC 3 cut(s) 116, 458, 719
HinP1I GCGC 3 cut(s) 116, 458, 719
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 250, 478, 589
HphI GGTGA 2 cut(s) 16, 455
Hpy166II GTNNAC 5 cut(s) 7, 92, 221, 608, 691
Hpy188I TCNGA 4 cut(s) 102, 277, 496, 664
Hpy188III TCNNGA 4 cut(s) 89, 130, 343, 482
Hpy8I GTNNAC 5 cut(s) 7, 92, 221, 608, 691
HpyAV CCTTC 2 cut(s) 448, 676
HpyCH4III ACNGT 2 cut(s) 340, 605
HpyCH4IV ACGT 2 cut(s) 94, 693
HpyCH4V TGCA 7 cut(s) 35, 71, 187, 221, 292, 305, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 727
HpyF3I CTNAG 1 cut(s) 493
HpySE526I ACGT 2 cut(s) 94, 693
Hsp92I GRCGYC 2 cut(s) 41, 116
Hsp92II CATG 6 cut(s) 133, 148, 161, 200, 395, 485
HspAI GCGC 3 cut(s) 116, 458, 719
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 489, 562
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 6 cut(s) 57, 70, 155, 567, 596, 625
Lsp1109I GCAGC 2 cut(s) 276, 562
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 419
MaeII ACGT 2 cut(s) 94, 693
MaeIII GTNAC 1 cut(s) 414
MalI GATC 2 cut(s) 491, 564
MboI GATC 2 cut(s) 489, 562
MboII GAAGA 5 cut(s) 122, 190, 259, 497, 647
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 205, 223
MluCI AATT 2 cut(s) 226, 575
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 2 cut(s) 244, 487
MnlI CCTC 6 cut(s) 106, 126, 155, 164, 665, 709
MseI TTAA 2 cut(s) 12, 669
MspA1I CMGCKG 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 596
MwoI GCNNNNNNNGC 2 cut(s) 53, 727
NarI GGCGCC 1 cut(s) 116
NcoI CCATGG 2 cut(s) 144, 157
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 489, 562
NlaIII CATG 6 cut(s) 133, 148, 161, 200, 395, 485
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 204
PagI TCATGA 2 cut(s) 129, 481
PctI GAATGC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 2 cut(s) 291, 552
PleI GAGTC 2 cut(s) 244, 486
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 2 cut(s) 244, 486
Psp124BI GAGCTC 1 cut(s) 205
Psp1406I AACGTT 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 204
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SacI GAGCTC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 12, 669
SatI GCNGC 2 cut(s) 290, 551
Sau3AI GATC 2 cut(s) 489, 562
SchI GAGTC 2 cut(s) 244, 487
SduI GDGCHC 2 cut(s) 205, 223
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 290
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 4 cut(s) 11, 204, 311, 475
SmoI CTYRAG 4 cut(s) 11, 204, 311, 475
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 2 cut(s) 226, 575
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 1 cut(s) 205
StyI CCWWGG 2 cut(s) 144, 157
TaaI ACNGT 2 cut(s) 340, 605
TaiI ACGT 2 cut(s) 97, 696
TaqI TCGA 2 cut(s) 205, 342
TasI AATT 2 cut(s) 226, 575
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 2 cut(s) 12, 669
Tru9I TTAA 2 cut(s) 12, 669
TscAI CASTG 3 cut(s) 228, 572, 608
TseI GCWGC 2 cut(s) 289, 550
TspDTI ATGAA 3 cut(s) 408, 417, 498
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 3 cut(s) 228, 572, 608
Vha464I CTTAAG 1 cut(s) 11
VneI GTGCAC 1 cut(s) 219
XapI RAATTY 2 cut(s) 226, 575
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.