Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9632512 .. 9635057

Gene Structure 2546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGAACCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTTTTTGCTAGTATCTTTGTTGCAGGGATTTATTTTGTTCGTGGACGTTCTCGGAGAAAGGAAGATCCCCCAAGACTCATGAGGTCTATGTCCATGGCTGTCCTCCATGGAGGGCATCTTGCCTTGAAGAGATTGCTAGAATATCATGAAGCTCGAGCAGACAAATTTGCATTGAATCAAGTTGACTGCGACTTTAAGACTCACCTTCTTTCTAAGAAACGCCCTAATTACAAGAAGCTGACGTCGATTCTTGCAAAGCTTGAGATGAGTGGAAAAGAAGCCGAGACAGTCGAGATATTAGAGAAAACAAGAACAAAGGCTAAAAATGAACAAAAATGGCATGAAGCATATGAAACTGAGATGTTACTAGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATGCGAGTGCTTGAGTCATGAAGAGATCTCAGATGCAAGGCGACCACTCTACAAGGCCATCATTTATATTATGTTGTCAAAGCCTGCTGCCAGAGATCAGTGGGAAAAGTTTATTGAGCTGAATCAAGCATTCCACTGTGAACCCGGTTTGAAGAAAGAGAGCTTGGAAGAAGCTCAACTCCATAACCTCGTTTCGGACTTCAAAGAGTTTGAGAAGGTCGTCAACATACTCAAAGATGATATAACAGAGGCGAAGCAGAGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.26

Weight (kDa)

9.14

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	41, 290
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	175, 223, 613, 664
AhlI	ACTAGT	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	6 cut(s)	200, 286, 307, 580, 624, 635
AluI	AGCT	6 cut(s)	200, 286, 307, 580, 624, 635
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	3 cut(s)	16, 242, 452
AvaI	CYCGRG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	3 cut(s)	57, 185, 416
BfoI	RGCGCY	1 cut(s)	458
BfrI	CTTAAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	172, 484
BpuEI	CTTGAG	2 cut(s)	329, 493
BpuMI	CCSGG	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	41, 290
BsaJI	CCNNGG	2 cut(s)	141, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	141, 154
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	396, 504
BseXI	GCAGC	1 cut(s)	535
BshFI	GGCC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	112, 486, 556
Bsp19I	CCATGG	2 cut(s)	141, 154
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	397, 503
BspHI	TCATGA	3 cut(s)	126, 193, 478
BspPI	GGATC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	3 cut(s)	112, 486, 556
BssNI	GRCGYC	2 cut(s)	41, 290
BssT1I	CCWWGG	2 cut(s)	141, 154
Bst4CI	ACNGT	2 cut(s)	337, 599
Bst6I	CTCTTC	2 cut(s)	170, 477
BstACI	GRCGYC	2 cut(s)	41, 290
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	261, 405, 490
BstDSI	CCRYGG	2 cut(s)	141, 154
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	3 cut(s)	115, 489, 559
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	3 cut(s)	112, 486, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	112, 486
BstYI	RGATCY	2 cut(s)	112, 486
BsuRI	GGCC	1 cut(s)	518
BtgI	CCRYGG	2 cut(s)	141, 154
BtsIMutI	CAGTG	2 cut(s)	566, 595
Cac8I	GCNNGC	1 cut(s)	546
CciI	TCATGA	3 cut(s)	126, 193, 478
CfoI	GCGC	1 cut(s)	457
CseI	GACGC	1 cut(s)	30
CviAII	CATG	6 cut(s)	127, 142, 155, 194, 389, 479
DdeI	CTNAG	3 cut(s)	261, 405, 490
DpnI	GATC	3 cut(s)	114, 488, 558
DpnII	GATC	3 cut(s)	112, 486, 556
Eam1104I	CTCTTC	2 cut(s)	170, 477
EarI	CTCTTC	2 cut(s)	170, 477
Eco130I	CCWWGG	2 cut(s)	141, 154
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	141, 154
ErhI	CCWWGG	2 cut(s)	141, 154
FaeI	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
FatI	CATG	6 cut(s)	126, 141, 154, 193, 388, 478
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	3 cut(s)	57, 185, 416
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	2 cut(s)	41, 290
Hin1II	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	2 cut(s)	232, 685
HindII	GTYRAC	2 cut(s)	232, 685
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	123, 223, 247, 295, 475, 583
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	3 cut(s)	16, 242, 452
Hpy166II	GTNNAC	5 cut(s)	7, 92, 232, 602, 685
Hpy188I	TCNGA	3 cut(s)	102, 493, 658
Hpy188III	TCNNGA	4 cut(s)	127, 194, 340, 479
Hpy8I	GTNNAC	5 cut(s)	7, 92, 232, 602, 685
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	263, 445, 670
HpyCH4III	ACNGT	2 cut(s)	337, 599
HpyCH4IV	ACGT	2 cut(s)	94, 290
HpyCH4V	TGCA	5 cut(s)	35, 71, 218, 302, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	261, 405, 490
HpySE526I	ACGT	2 cut(s)	94, 290
Hsp92I	GRCGYC	2 cut(s)	41, 290
Hsp92II	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	112, 486, 556
LpnPI	CCDG	4 cut(s)	57, 558, 565, 619
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	2 cut(s)	172, 484
MaeI	CTAG	3 cut(s)	57, 185, 416
MaeII	ACGT	2 cut(s)	94, 290
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	3 cut(s)	114, 488, 558
MboI	GATC	3 cut(s)	112, 486, 556
MboII	GAAGA	5 cut(s)	122, 187, 494, 625, 641
MflI	RGATCY	2 cut(s)	112, 486
MluCI	AATT	2 cut(s)	212, 274
MlyI	GAGTC	3 cut(s)	117, 241, 484
MnlI	CCTC	5 cut(s)	123, 152, 161, 659, 703
MseI	TTAA	2 cut(s)	12, 243
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	590
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	2 cut(s)	141, 154
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	3 cut(s)	112, 486, 556
NlaIII	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
NmeAIII	GCCGAG	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	3 cut(s)	126, 193, 478
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	223, 295, 583
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	3 cut(s)	117, 241, 483
PpsI	GAGTC	3 cut(s)	117, 241, 483
PspXI	VCTCGAGB	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	112, 486
SaqAI	TTAA	2 cut(s)	12, 243
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	3 cut(s)	112, 486, 556
SchI	GAGTC	3 cut(s)	117, 241, 484
ScrFI	CCNGG	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	172, 484
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	4 cut(s)	11, 201, 308, 472
SmoI	CTYRAG	4 cut(s)	11, 201, 308, 472
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	2 cut(s)	212, 274
SspMI	CTAG	3 cut(s)	57, 185, 416
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	141, 154
TaaI	ACNGT	2 cut(s)	337, 599
TaiI	ACGT	2 cut(s)	97, 293
TaqI	TCGA	3 cut(s)	202, 293, 339
TasI	AATT	2 cut(s)	212, 274
TfiI	GAWTC	3 cut(s)	223, 295, 583
Tru1I	TTAA	2 cut(s)	12, 243
Tru9I	TTAA	2 cut(s)	12, 243
TscAI	CASTG	2 cut(s)	566, 602
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	5 cut(s)	210, 390, 405, 414, 495
TspRI	CASTG	2 cut(s)	566, 602
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	201
XspI	CTAG	3 cut(s)	57, 185, 416
ZraI	GACGTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.