RchiOBHm_Chr5g0014111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004483
Physical Location & Seq
Reverse (-)
9594591 .. 9595658
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29458

Sequence Viewer

Length: 597 bp
ATGGTGAACCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTCTTTGCCAGTATCTTTGTTGCAGGGGTTTATTTTGTTCGTGAACGTTCTCGGAGAAAGGAAGAGGCGCCCCCAAAACTCATGAGGTCTGTGTCCATGGCCGTCCTCCATGGAGGGAAGCTGGCCTTGAAGAGATTGCTAGATTATCATGGAGCTCGAGCAGACAAATGTGCACTGAATTTAGCTGAATGTGAGTTGAAGACTCAACTTTTTAGTGAGAAACGCCCTGATTACAAGAAGCTGCAGTTGATTGTTGCAAAGCTTGAGATGAGTGGAAAAGAAGCCGAGACAGTCGAGATATTAGAGAAAGCAAGAATAAAGGCGAAAAAGGAACAAAAATGGCATGAAGCATATGAAACTGAGATGTTACTAGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATGTGATTGCTTGAGTCATGAAGAGATCTCAGATGCAAGGCGACCACTCTACAAGGTACGGAAACCTTTTCCCTCCTATTTTCTTAGCAGCCAATCAAACAAAATATGGAATAACATGATCAGATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.91

Weight (kDa)

9.5

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AclI AACGTT 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 226
AcyI GRCGYC 2 cut(s) 41, 116
AfaI GTAC 1 cut(s) 522
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 178, 247
AhlI ACTAGT 1 cut(s) 418
AluBI AGCT 5 cut(s) 169, 203, 233, 289, 310
AluI AGCT 5 cut(s) 169, 203, 233, 289, 310
Alw21I GWGCWC 2 cut(s) 205, 223
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 2 cut(s) 147, 171
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 289, 552
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 2 cut(s) 118, 460
AsuHPI GGTGA 2 cut(s) 16, 455
AvaI CYCGRG 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 205, 223
BbvI GCAGC 2 cut(s) 276, 564
BceAI ACGGC 2 cut(s) 32, 134
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 329
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 188, 419
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 2 cut(s) 119, 461
BfrI CTTAAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 489
BisI GCNGC 2 cut(s) 290, 553
BlsI GCNGC 2 cut(s) 291, 554
BmeT110I CYCGRG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 332, 496
BsaHI GRCGYC 2 cut(s) 41, 116
BsaJI CCNNGG 2 cut(s) 144, 157
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 144, 157
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 399, 507
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 276, 564
BshFI GGCC 2 cut(s) 149, 173
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 205, 223
BsiHKCI CYCGRG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 149, 173
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 205, 223
Bsp143I GATC 2 cut(s) 489, 582
Bsp19I CCATGG 2 cut(s) 144, 157
BspANI GGCC 2 cut(s) 149, 173
BspCNI CTCAG 2 cut(s) 400, 506
BspHI TCATGA 2 cut(s) 129, 481
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 144, 157
BssMI GATC 2 cut(s) 489, 582
BssNI GRCGYC 2 cut(s) 41, 116
BssT1I CCWWGG 2 cut(s) 144, 157
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 3 cut(s) 105, 173, 480
BstACI GRCGYC 2 cut(s) 41, 116
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 408, 493, 548
BstDSI CCRYGG 2 cut(s) 144, 157
BstH2I RGCGCY 2 cut(s) 119, 461
BstHHI GCGC 2 cut(s) 118, 460
BstKTI GATC 2 cut(s) 492, 585
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 489, 582
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 276, 564
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 2 cut(s) 149, 173
BtgI CCRYGG 2 cut(s) 144, 157
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 2 cut(s) 129, 481
CfoI GCGC 2 cut(s) 118, 460
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 521
CviAII CATG 7 cut(s) 130, 145, 158, 197, 392, 482, 580
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 3 cut(s) 408, 493, 548
DinI GGCGCC 1 cut(s) 117
DpnI GATC 2 cut(s) 491, 584
DpnII GATC 2 cut(s) 489, 582
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 105, 173, 480
EarI CTCTTC 3 cut(s) 105, 173, 480
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 144, 157
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 144, 157
EcoT38I GRGCYC 1 cut(s) 205
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 144, 157
FaeI CATG 7 cut(s) 133, 148, 161, 200, 395, 485, 583
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 7 cut(s) 129, 144, 157, 196, 391, 481, 579
FauNDI CATATG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 290, 553
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 290, 553
FspBI CTAG 2 cut(s) 188, 419
GlaI GCGC 2 cut(s) 117, 459
GluI GCNGC 2 cut(s) 290, 553
HaeII RGCGCY 2 cut(s) 119, 461
HaeIII GGCC 2 cut(s) 149, 173
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 118, 460
Hin1I GRCGYC 2 cut(s) 41, 116
Hin1II CATG 7 cut(s) 133, 148, 161, 200, 395, 485, 583
Hin6I GCGC 2 cut(s) 116, 458
HinP1I GCGC 2 cut(s) 116, 458
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 250, 478
HphI GGTGA 2 cut(s) 16, 455
Hpy166II GTNNAC 3 cut(s) 7, 92, 221
Hpy188I TCNGA 3 cut(s) 102, 496, 587
Hpy188III TCNNGA 5 cut(s) 89, 130, 343, 482, 594
Hpy8I GTNNAC 3 cut(s) 7, 92, 221
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 35, 71, 221, 292, 305, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 408, 493, 548
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 2 cut(s) 41, 116
Hsp92II CATG 7 cut(s) 133, 148, 161, 200, 395, 485, 583
HspAI GCGC 2 cut(s) 116, 458
KasI GGCGCC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 2 cut(s) 489, 582
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 57, 70, 155, 288
Lsp1109I GCAGC 2 cut(s) 276, 564
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 188, 419
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 414
MalI GATC 2 cut(s) 491, 584
MboI GATC 2 cut(s) 489, 582
MboII GAAGA 4 cut(s) 122, 190, 259, 497
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 205, 223
MluCI AATT 1 cut(s) 226
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 2 cut(s) 244, 487
MnlI CCTC 5 cut(s) 106, 126, 155, 164, 547
MseI TTAA 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 53
NarI GGCGCC 1 cut(s) 116
NcoI CCATGG 2 cut(s) 144, 157
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 489, 582
NlaIII CATG 7 cut(s) 133, 148, 161, 200, 395, 485, 583
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 204
PagI TCATGA 2 cut(s) 129, 481
PkrI GCNGC 2 cut(s) 291, 554
PleI GAGTC 2 cut(s) 244, 486
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 2 cut(s) 244, 486
Psp124BI GAGCTC 1 cut(s) 205
Psp1406I AACGTT 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 204
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
SacI GAGCTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 290, 553
Sau3AI GATC 2 cut(s) 489, 582
SchI GAGTC 2 cut(s) 244, 487
SduI GDGCHC 2 cut(s) 205, 223
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 290
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 4 cut(s) 11, 204, 311, 475
SmoI CTYRAG 4 cut(s) 11, 204, 311, 475
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 1 cut(s) 226
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 2 cut(s) 188, 419
SstI GAGCTC 1 cut(s) 205
StyI CCWWGG 2 cut(s) 144, 157
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 205, 342
TasI AATT 1 cut(s) 226
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 289, 552
TspDTI ATGAA 3 cut(s) 408, 417, 498
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 1 cut(s) 228
Vha464I CTTAAG 1 cut(s) 11
VneI GTGCAC 1 cut(s) 219
XapI RAATTY 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 2 cut(s) 188, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.