Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9869275 .. 9870537

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTGAACCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTCTTTGCCAGTATCTTTGTTGCAGGGGTTTATTTTGTTCGTGGACGTTCTCGGAAAAAGGAAGAGCCCCCAAAACTCATGAGGTCTATGTCCATGGCTGTCCTCCATGGAGGGCATCTGGCCTTGAAGAGATTGCTAGAATATCATGAAGCTCGAGCAGACAAAGCACTGGATCAAGCTGAATGTGACTTGAAGGTTCACCTTCTTAGTAAGAAACGCCCTGATTACAAGAAGCTGCAGCCGATTGTTGCAAAGCTTGAGATGAGTGGAAAAGAAGTGGAGACAGTCGAGATATTAGAGAAAGCAAGAACAAAGGCTAAAAATGAACAAAAATGGCATGAAGCATATGAAACTGAGATGTTACTAGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATGCGAGTGCTTGAGTCATGAAGAGATCTCAGATGCAAGGCGACCACTCTACAAGGCCATCATTTACATTATGTTGTCAAAGCCTGCTGCCAGAGATCAGTGGGAAAAATTTATCGAGCTGAATCAAGCATTCCACTGTGAACCCAGTTTGAAGAAAGAGAGCTTGGAAGAAGCTCAACTCCATATCCTCATTTCGGACTTTAAAGAGTTTGAGAAGGTCGTCAACGTACTCAAAGATGATATAAAAGAGGCGAAAGCAAAGCAGAGAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

28.27

Weight (kDa)

9.02

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	175, 241, 610
AhlI	ACTAGT	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	7 cut(s)	200, 227, 283, 304, 577, 621, 632
AluI	AGCT	7 cut(s)	200, 227, 283, 304, 577, 621, 632
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	168, 513
ApeKI	GCWGC	3 cut(s)	283, 286, 545
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	16, 239, 449
AvaI	CYCGRG	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	270, 298, 532
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	323
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	2 cut(s)	185, 413
BfmI	CTRYAG	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	284, 287, 546
BlsI	GCNGC	3 cut(s)	285, 288, 547
BmeT110I	CYCGRG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	172, 481
BmuI	ACTGGG	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	326, 490
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	141, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	3 cut(s)	57, 222, 603
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	141, 154
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	393, 501
BseNI	ACTGG	3 cut(s)	57, 222, 603
BseXI	GCAGC	3 cut(s)	270, 298, 532
BshFI	GGCC	2 cut(s)	170, 515
BsiHKCI	CYCGRG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	170, 515
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	220, 483, 553
Bsp19I	CCATGG	2 cut(s)	141, 154
BspANI	GGCC	2 cut(s)	170, 515
BspCNI	CTCAG	2 cut(s)	394, 500
BspHI	TCATGA	3 cut(s)	126, 193, 475
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	57, 222, 603
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	3 cut(s)	220, 483, 553
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	141, 154
Bst4CI	ACNGT	2 cut(s)	334, 596
Bst6I	CTCTTC	3 cut(s)	105, 170, 474
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	254, 402, 487
BstDSI	CCRYGG	2 cut(s)	141, 154
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	3 cut(s)	223, 486, 556
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	3 cut(s)	220, 483, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 212
BstSFI	CTRYAG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	270, 298, 532
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	170, 515
BtgI	CCRYGG	2 cut(s)	141, 154
BtsIMutI	CAGTG	3 cut(s)	215, 563, 592
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	3 cut(s)	126, 193, 475
CfoI	GCGC	1 cut(s)	454
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	6 cut(s)	127, 142, 155, 194, 386, 476
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	3 cut(s)	254, 402, 487
DpnI	GATC	3 cut(s)	222, 485, 555
DpnII	GATC	3 cut(s)	220, 483, 553
DraI	TTTAAA	1 cut(s)	661
Eam1104I	CTCTTC	3 cut(s)	105, 170, 474
EarI	CTCTTC	3 cut(s)	105, 170, 474
Eco130I	CCWWGG	2 cut(s)	141, 154
Eco24I	GRGCYC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	141, 154
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	141, 154
FaeI	CATG	6 cut(s)	130, 145, 158, 197, 389, 479
FatI	CATG	6 cut(s)	126, 141, 154, 193, 385, 475
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	284, 287, 546
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	284, 287, 546
FspBI	CTAG	2 cut(s)	185, 413
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	284, 287, 546
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	170, 515
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	6 cut(s)	130, 145, 158, 197, 389, 479
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	472, 580
HphI	GGTGA	3 cut(s)	16, 239, 449
Hpy166II	GTNNAC	5 cut(s)	7, 92, 247, 599, 682
Hpy188I	TCNGA	3 cut(s)	102, 490, 655
Hpy188III	TCNNGA	4 cut(s)	127, 194, 337, 476
Hpy8I	GTNNAC	5 cut(s)	7, 92, 247, 599, 682
HpyAV	CCTTC	4 cut(s)	235, 260, 442, 667
HpyCH4III	ACNGT	2 cut(s)	334, 596
HpyCH4IV	ACGT	2 cut(s)	94, 684
HpyCH4V	TGCA	5 cut(s)	35, 71, 286, 299, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 212
HpyF3I	CTNAG	3 cut(s)	254, 402, 487
HpySE526I	ACGT	2 cut(s)	94, 684
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	130, 145, 158, 197, 389, 479
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	3 cut(s)	220, 483, 553
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	8 cut(s)	57, 70, 152, 203, 282, 555, 562, 616
Lsp1109I	GCAGC	3 cut(s)	270, 298, 532
LweI	GCATC	2 cut(s)	172, 481
MaeI	CTAG	2 cut(s)	185, 413
MaeII	ACGT	2 cut(s)	94, 684
MaeIII	GTNAC	2 cut(s)	233, 408
MalI	GATC	3 cut(s)	222, 485, 555
MboI	GATC	3 cut(s)	220, 483, 553
MboII	GAAGA	5 cut(s)	122, 187, 491, 622, 638
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	123, 152, 161, 656, 700
MseI	TTAA	2 cut(s)	12, 660
MspCI	CTTAAG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	53, 212
NcoI	CCATGG	2 cut(s)	141, 154
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	220, 483, 553
NlaIII	CATG	6 cut(s)	130, 145, 158, 197, 389, 479
NmuCI	GTSAC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	3 cut(s)	126, 193, 475
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	285, 288, 547
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PspXI	VCTCGAGB	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	12, 660
SatI	GCNGC	3 cut(s)	284, 287, 546
Sau3AI	GATC	3 cut(s)	220, 483, 553
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	172, 481
SfcI	CTRYAG	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	4 cut(s)	11, 201, 305, 469
SmoI	CTYRAG	4 cut(s)	11, 201, 305, 469
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	1 cut(s)	566
SspMI	CTAG	2 cut(s)	185, 413
StyI	CCWWGG	2 cut(s)	141, 154
TaaI	ACNGT	2 cut(s)	334, 596
TaiI	ACGT	2 cut(s)	97, 687
TaqI	TCGA	3 cut(s)	202, 336, 573
TasI	AATT	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	12, 660
Tru9I	TTAA	2 cut(s)	12, 660
TscAI	CASTG	3 cut(s)	222, 563, 599
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	283, 286, 545
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	210, 387, 402, 411, 492
TspRI	CASTG	3 cut(s)	222, 563, 599
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	201
XspI	CTAG	2 cut(s)	185, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.