Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Forward (+)

27659083 .. 27660098

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGAACTCTTCCAAACTTTCCAGAGCGAGAACTATGTATGGAGCAATGGCAATGGCAACTGCGGTCTTTGCCGGCATTTATGTTGCGCGGACTTACATATTTGGTGCTAGGAAAGAAGAGGCTCAAGGTCCTAGACTTACGAGGTCCATGTCCATCGCATTCCTCCATGGAGGGCAGCTGGCCTTGCAGAGATTGCTTGAATATCATGAAGCTCGAGCGGATAAATCAGCAGTGGAGATAGCTGAATGTGAGTTGAGGACTTACCTTGTGGAGCAACGCCCTGATTACAAGAAGCTGCAGTCGATTGTTGCAAAGCTTGAAATGAGTGGAAAAGAAGCCAAGGCAATTGAAATATTGAAGAAAGCAATAGCAAAGGCGCATAACGAAGGAAAAAACCATGAAGCATATGAAAATGAGATGCTACTGGTGGAAATGCTTATATACAAGGGTGATTTTGAGGAGGCGCTAGGCCGTGAATGCTTGCAGCATGTAGAGATTTCAGATGCAAGGCGTCCGCTGTACAAGGCTATTATTTACATCATGTTAAAGCGCAACAAGGATGAAATTATAGAATGCTGGAAAGAGTTTAACGCTCTAAAAGAACTCCAAAGTTTGCCTAGTGACAATGAAAGCTTGGAAGAAAGCCAAATTCATAAACTCAGTACAAATTATGAGGAGTTCGAGAAGGTCGTCAACATGCTCAGAAATGACATAGAGGGGCAAGCAAGGAAGAACAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

28.49

Weight (kDa)

7.69

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	1 cut(s)	91
AciI	CCGC	4 cut(s)	65, 91, 221, 518
AcsI	RAATTY	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	524, 667
AgsI	TTSAA	4 cut(s)	203, 323, 353, 361
AluBI	AGCT	6 cut(s)	181, 215, 245, 298, 319, 636
AluI	AGCT	6 cut(s)	181, 215, 245, 298, 319, 636
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	183, 472
ApeKI	GCWGC	3 cut(s)	178, 298, 487
ApoI	RAATTY	1 cut(s)	651
AspLEI	GCGC	4 cut(s)	91, 382, 469, 555
AspS9I	GGNCC	2 cut(s)	131, 147
AsuHPI	GGTGA	2 cut(s)	16, 464
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	131, 147
BbvI	GCAGC	3 cut(s)	190, 285, 499
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	459
BfaI	CTAG	4 cut(s)	111, 135, 470, 621
BfmI	CTRYAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	3 cut(s)	179, 299, 488
BlsI	GCNGC	3 cut(s)	180, 300, 489
Bme18I	GGWCC	2 cut(s)	131, 147
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	131, 147
BmsI	GCATC	2 cut(s)	411, 496
BpuEI	CTTGAG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	169, 342
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	54, 60
BseDI	CCNNGG	2 cut(s)	169, 342
BseGI	GGATG	1 cut(s)	568
BseMI	GCAATG	2 cut(s)	54, 60
BseMII	CTCAG	2 cut(s)	676, 718
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	2 cut(s)	476, 692
BseXI	GCAGC	3 cut(s)	190, 285, 499
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	185, 474
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	75
BsmI	GAATGC	3 cut(s)	161, 485, 581
BsnI	GGCC	2 cut(s)	185, 474
BsoBI	CYCGRG	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	4 cut(s)	65, 91, 221, 518
BspANI	GGCC	2 cut(s)	185, 474
BspCNI	CTCAG	2 cut(s)	675, 717
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	54, 60
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	169, 342
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	169, 342
Bst6I	CTCTTC	2 cut(s)	16, 114
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	4 cut(s)	76, 183, 485, 726
BstDEI	CTNAG	2 cut(s)	662, 704
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	4 cut(s)	91, 382, 469, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 187, 196, 480
BstNSI	RCATGY	2 cut(s)	494, 703
BstSFI	CTRYAG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	190, 285, 499
BsuRI	GGCC	2 cut(s)	185, 474
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	76, 183, 485, 726
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	4 cut(s)	91, 382, 469, 555
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	131, 147
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	523, 666
CviAII	CATG	7 cut(s)	151, 170, 209, 401, 491, 544, 700
CviQI	GTAC	2 cut(s)	523, 666
DdeI	CTNAG	2 cut(s)	662, 704
Eam1104I	CTCTTC	2 cut(s)	16, 114
EarI	CTCTTC	2 cut(s)	16, 114
Eco130I	CCWWGG	2 cut(s)	169, 342
Eco47I	GGWCC	2 cut(s)	131, 147
Eco88I	CYCGRG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	169, 342
ErhI	CCWWGG	2 cut(s)	169, 342
FaeI	CATG	7 cut(s)	154, 173, 212, 404, 494, 547, 703
FatI	CATG	7 cut(s)	150, 169, 208, 400, 490, 543, 699
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	179, 299, 488
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	179, 299, 488
FspBI	CTAG	4 cut(s)	111, 135, 470, 621
GlaI	GCGC	4 cut(s)	90, 381, 468, 554
GluI	GCNGC	3 cut(s)	179, 299, 488
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	185, 474
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	4 cut(s)	91, 382, 469, 555
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	7 cut(s)	154, 173, 212, 404, 494, 547, 703
Hin6I	GCGC	4 cut(s)	89, 380, 467, 553
HinP1I	GCGC	4 cut(s)	89, 380, 467, 553
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	2 cut(s)	317, 634
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	16, 464
Hpy166II	GTNNAC	2 cut(s)	7, 697
Hpy188I	TCNGA	2 cut(s)	505, 707
Hpy188III	TCNNGA	3 cut(s)	24, 209, 685
Hpy8I	GTNNAC	2 cut(s)	7, 697
HpyAV	CCTTC	2 cut(s)	383, 682
HpyCH4V	TGCA	5 cut(s)	190, 301, 314, 487, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 187, 196, 480
HpyF3I	CTNAG	2 cut(s)	662, 704
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	7 cut(s)	154, 173, 212, 404, 494, 547, 703
HspAI	GCGC	4 cut(s)	89, 380, 467, 553
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	44, 274
LpnPI	CCDG	6 cut(s)	37, 88, 167, 297, 413, 565
Lsp1109I	GCAGC	3 cut(s)	190, 285, 499
LweI	GCATC	2 cut(s)	411, 496
MaeI	CTAG	4 cut(s)	111, 135, 470, 621
MaeIII	GTNAC	1 cut(s)	623
MbiI	CCGCTC	1 cut(s)	221
MboII	GAAGA	5 cut(s)	3, 131, 373, 653, 745
MfeI	CAATTG	1 cut(s)	348
MluCI	AATT	4 cut(s)	348, 567, 651, 670
MnlI	CCTC	9 cut(s)	115, 138, 167, 176, 252, 454, 457, 670, 712
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	548, 591
MspA1I	CMGCKG	2 cut(s)	181, 520
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	3 cut(s)	161, 485, 581
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	4 cut(s)	71, 187, 196, 480
NaeI	GCCGGC	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	409
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	7 cut(s)	154, 173, 212, 404, 494, 547, 703
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	2 cut(s)	494, 703
PaeR7I	CTCGAG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	3 cut(s)	161, 485, 581
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	180, 300, 489
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	131, 147
PspPPI	RGGWCCY	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	524, 667
RsaNI	GTAC	2 cut(s)	523, 666
SaqAI	TTAA	2 cut(s)	548, 591
SatI	GCNGC	3 cut(s)	179, 299, 488
Sau96I	GGNCC	2 cut(s)	131, 147
SfaNI	GCATC	2 cut(s)	411, 496
SfcI	CTRYAG	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	216
SinI	GGWCC	2 cut(s)	131, 147
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	126, 216
SmoI	CTYRAG	2 cut(s)	126, 216
Sse9I	AATT	4 cut(s)	348, 567, 651, 670
SsiI	CCGC	4 cut(s)	65, 91, 221, 518
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	111, 135, 470, 621
StyI	CCWWGG	2 cut(s)	169, 342
TaqI	TCGA	3 cut(s)	217, 305, 684
TasI	AATT	4 cut(s)	348, 567, 651, 670
TatI	WGTACW	2 cut(s)	522, 665
Tru1I	TTAA	2 cut(s)	548, 591
Tru9I	TTAA	2 cut(s)	548, 591
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	3 cut(s)	178, 298, 487
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	6 cut(s)	225, 417, 426, 579, 644, 645
TspRI	CASTG	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	131, 147
XapI	RAATTY	1 cut(s)	651
XceI	RCATGY	2 cut(s)	494, 703
XhoI	CTCGAG	1 cut(s)	216
XspI	CTAG	4 cut(s)	111, 135, 470, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.