Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Reverse (-)

3902127 .. 3903950

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAATTTCTCCAAAAGTTTCAGTGTTAGAACTAAATATGGAGCGATGGCAACCGTGGTCTTTGCCAGCATTTATGTTGTAGGGGCTTACATATCTCGTGCCCGAAAAATGAGCAAAGAAGAGCATCAAGGTCCTCGACTTACAAGGTCCATGTCCATAGCAGTCCTCCATGGAGGGCAGCTTGCCTTGCAGAGATTGTTCGAATATCACGAAGCTCGAGCAGACAAATCTGCAGTGGAGATAGCTGAATGTGAGCTGAAGACTCACCTTGCAGAACAACACCCTGATTACAAGAAGCTGCAGTCGGTTATTGGGAAGCTTGAAATGAGTGGGAAAGAAGCCCAAGCAGTTGAAATATTAAAGAATGCAACAGCAAAAGCACGCAATGAAGGAAGAAACCATGAAGCATATGAATACGAGATGTTACTAGTAGAAATGCTTATATACAAGGGAGATTTTAAGGAGGCGCTCGGCCGTGAATGCTTGAGACATGCTGAGATTTCGGATGCACGGCGTCCACTGTTCAAGGCTATCGTTCACATCATAGAGGGCAACAAGAATGAAGGGACAAAATATTGGAGAGAATTTAACGATCTAAAAGAAGAATTCCATTGTACACCCTGTATGAAAGAAAGCATGGAAGAATGCCAACTCCATAAACTCAGTACAAATTTCAACGAGTTTGAGAAGGTCGTCGACATCCTCAAAAAGGACATAATAGAGGTACAAGCAAAAAGAAACAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.8

Weight (kDa)

8.65

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	4 cut(s)	7, 587, 608, 673
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	3 cut(s)	619, 670, 729
AfiI	CCNNNNNNNGG	1 cut(s)	712
AgsI	TTSAA	4 cut(s)	326, 356, 529, 679
AhlI	ACTAGT	1 cut(s)	430
AluBI	AGCT	6 cut(s)	184, 218, 248, 259, 301, 322
AluI	AGCT	6 cut(s)	184, 218, 248, 259, 301, 322
Alw26I	GTCTC	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	181, 301
ApoI	RAATTY	4 cut(s)	7, 587, 608, 673
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	134, 150
AsuHPI	GGTGA	2 cut(s)	16, 260
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	2 cut(s)	134, 150
BaeGI	GKGCMC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	193, 288
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	2 cut(s)	462, 530
BcoDI	GTCTC	1 cut(s)	484
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	2 cut(s)	234, 302
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	2 cut(s)	182, 302
BlsI	GCNGC	2 cut(s)	183, 303
Bme18I	GGWCC	2 cut(s)	134, 150
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	134, 150
BmsI	GCATC	2 cut(s)	136, 499
BpiI	GAAGAC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	57, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	57, 172
BseGI	GGATG	2 cut(s)	514, 702
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	489, 679
BseSI	GKGCMC	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	193, 288
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	3 cut(s)	373, 488, 653
BsnI	GGCC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	617
Bsp143I	GATC	1 cut(s)	595
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	490, 678
BspMAI	CTGCAG	2 cut(s)	238, 306
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	617
BssECI	CCNNGG	2 cut(s)	57, 172
BssMI	GATC	1 cut(s)	595
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	58, 525
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	517
BstAUI	TGTACA	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	70, 186, 385
BstDEI	CTNAG	2 cut(s)	498, 665
BstDSI	CCRYGG	2 cut(s)	57, 172
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	2 cut(s)	514, 702
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 483
BstNSI	RCATGY	1 cut(s)	497
BstSFI	CTRYAG	2 cut(s)	234, 302
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	193, 288
BstV2I	GAAGAC	1 cut(s)	269
BstZI	CGGCCG	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	57, 172
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	514, 702
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	31, 243, 521
Cac8I	GCNNGC	3 cut(s)	70, 186, 385
CfoI	GCGC	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	134, 150
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	618, 669, 728
CviAII	CATG	5 cut(s)	154, 173, 404, 494, 640
CviQI	GTAC	3 cut(s)	618, 669, 728
DdeI	CTNAG	2 cut(s)	498, 665
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	475
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	134, 150
Eco52I	CGGCCG	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	157, 176, 407, 497, 643
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	153, 172, 403, 493, 639
FauNDI	CATATG	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	2 cut(s)	182, 302
FokI	GGATG	2 cut(s)	521, 689
Fsp4HI	GCNGC	2 cut(s)	182, 302
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	2 cut(s)	182, 302
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	477
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	157, 176, 407, 497, 643
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	16, 260
Hpy166II	GTNNAC	4 cut(s)	521, 541, 620, 700
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	4 cut(s)	521, 541, 620, 700
Hpy99I	CGWCG	1 cut(s)	701
HpyAV	CCTTC	3 cut(s)	386, 560, 685
HpyCH4III	ACNGT	2 cut(s)	58, 525
HpyCH4V	TGCA	6 cut(s)	193, 236, 275, 304, 371, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 483
HpyF3I	CTNAG	2 cut(s)	498, 665
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	5 cut(s)	157, 176, 407, 497, 643
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	1 cut(s)	595
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	82, 300, 637
Lsp1109I	GCAGC	2 cut(s)	193, 288
LweI	GCATC	2 cut(s)	136, 499
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	5 cut(s)	134, 274, 408, 617, 656
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	4 cut(s)	7, 587, 608, 673
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	7 cut(s)	147, 170, 179, 460, 544, 716, 718
MseI	TTAA	3 cut(s)	362, 462, 591
Mva1269I	GAATGC	3 cut(s)	373, 488, 653
MwoI	GCNNNNNNNGC	2 cut(s)	190, 483
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	5 cut(s)	157, 176, 407, 497, 643
NmeAIII	GCCGAG	1 cut(s)	453
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	3 cut(s)	373, 488, 653
PkrI	GCNGC	2 cut(s)	183, 303
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	134, 150
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	219
PstI	CTGCAG	2 cut(s)	238, 306
RsaI	GTAC	3 cut(s)	619, 670, 729
RsaNI	GTAC	3 cut(s)	618, 669, 728
SalI	GTCGAC	1 cut(s)	698
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	362, 462, 591
SatI	GCNGC	2 cut(s)	182, 302
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	134, 150
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	2 cut(s)	136, 499
SfcI	CTRYAG	2 cut(s)	234, 302
Sfr274I	CTCGAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	2 cut(s)	134, 150
SlaI	CTCGAG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	219, 487
SmoI	CTYRAG	2 cut(s)	219, 487
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	4 cut(s)	7, 587, 608, 673
SspI	AATATT	2 cut(s)	360, 578
SspMI	CTAG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	58, 525
TaqI	TCGA	4 cut(s)	139, 204, 220, 699
TasI	AATT	4 cut(s)	7, 587, 608, 673
TatI	WGTACW	2 cut(s)	617, 668
Tru1I	TTAA	3 cut(s)	362, 462, 591
Tru9I	TTAA	3 cut(s)	362, 462, 591
TscAI	CASTG	3 cut(s)	31, 243, 528
TseI	GCWGC	2 cut(s)	181, 301
TspDTI	ATGAA	5 cut(s)	405, 420, 429, 579, 644
TspRI	CASTG	3 cut(s)	31, 243, 528
VpaK11BI	GGWCC	2 cut(s)	134, 150
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	4 cut(s)	7, 587, 608, 673
XceI	RCATGY	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.