Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073031 .. 1073504

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCACACCGGGCCGGTCGACCCGGACCCAACCGGAGAGCGCGCAACCACCGCAACCGTCCACTCGCCCCCGATGCCGAGGATTCCCACGCGCTGCCGAGTTCCGACTCGGACAGCTCCTCCGAATCGGACGGCGAGTCAGCGCGCCTCTCCGGCCTCGCCGCGAGCTTCCGAATCGTCTCGGAGTCGCTGCTGAGGATGGAGCAGACGGAGCTGGAGATGACCAAGGCGAGGGAGGCTCTGCGGCTCGAGGCGGAGAATCGGCGGCTCGAGTCGGAGGCCGAGTTGACTCAGATGCTGCTGCAGACTCAGCTCCAGATCGCGTCGTTGGTTTCGCGGCGGAGGAGGGATCATCATCCCAGCCGTAAACGGAAGCGAGCTGAGGAAGAAGGAGGAGAAAACGACTCGTCGTCTTCGCCTAAGAGTGAAGGAGCTTTGGCCTTGAGCTTGCTTCAGTGTAATTTGTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

6.99

Isoelectric Point (pI)

81.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
AciI	CCGC	7 cut(s)	52, 162, 244, 254, 265, 337, 340
AclWI	GGATC	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	231
AhdI	GACNNNNNGTC	2 cut(s)	136, 409
AluBI	AGCT	7 cut(s)	117, 168, 214, 313, 380, 434, 447
AluI	AGCT	7 cut(s)	117, 168, 214, 313, 380, 434, 447
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	248, 269
AoxI	GGCC	4 cut(s)	12, 154, 279, 438
ApeKI	GCWGC	4 cut(s)	94, 190, 298, 301
AspLEI	GCGC	5 cut(s)	43, 45, 94, 145, 147
AspS9I	GGNCC	2 cut(s)	12, 26
AsuC2I	CCSGG	2 cut(s)	11, 24
AvaI	CYCGRG	2 cut(s)	248, 269
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	405
BbvCI	CCTCAGC	2 cut(s)	194, 381
BbvI	GCAGC	4 cut(s)	81, 177, 285, 288
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	148, 348
BcnI	CCSGG	2 cut(s)	11, 24
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	8 cut(s)	95, 162, 191, 245, 266, 299, 302, 338
BlsI	GCNGC	8 cut(s)	96, 163, 192, 246, 267, 300, 303, 339
Bme1390I	CCNGG	2 cut(s)	11, 24
Bme18I	GGWCC	1 cut(s)	26
BmeRI	GACNNNNNGTC	2 cut(s)	136, 409
BmeT110I	CYCGRG	2 cut(s)	248, 269
BmgT120I	GGNCC	2 cut(s)	12, 26
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	11, 24
BmsI	GCATC	2 cut(s)	64, 285
BpiI	GAAGAC	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	2 cut(s)	236, 299
Bpu10I	CCTNAGC	2 cut(s)	194, 381
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	2 cut(s)	11, 24
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	78, 225
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	78, 225
BseGI	GGATG	2 cut(s)	204, 355
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	4 cut(s)	185, 305, 323, 372
BsePI	GCGCGC	2 cut(s)	41, 143
BseRI	GAGGAG	3 cut(s)	109, 358, 408
BseXI	GCAGC	4 cut(s)	81, 177, 285, 288
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	14, 156, 281, 440
BsiEI	CGRYCG	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	248, 269
BsiSI	CCGG	5 cut(s)	10, 15, 24, 34, 153
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	4 cut(s)	14, 156, 281, 440
BsoBI	CYCGRG	2 cut(s)	248, 269
Bsp143I	GATC	2 cut(s)	318, 349
BspACI	CCGC	7 cut(s)	52, 162, 244, 254, 265, 337, 340
BspANI	GGCC	4 cut(s)	14, 156, 281, 440
BspCNI	CTCAG	4 cut(s)	186, 304, 322, 373
BspFNI	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	78, 225
BssHII	GCGCGC	2 cut(s)	41, 143
BssMI	GATC	2 cut(s)	318, 349
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	43, 145, 166, 378, 449
BstDEI	CTNAG	5 cut(s)	194, 291, 309, 381, 420
BstF5I	GGATG	2 cut(s)	204, 355
BstFNI	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
BstHHI	GCGC	5 cut(s)	43, 45, 94, 145, 147
BstKTI	GATC	2 cut(s)	321, 352
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	318, 349
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 51, 74, 153, 211, 236, 310
BstSCI	CCNGG	2 cut(s)	9, 22
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
BstV1I	GCAGC	4 cut(s)	81, 177, 285, 288
BstV2I	GAAGAC	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	14, 156, 281, 440
BtsCI	GGATG	2 cut(s)	204, 355
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	5 cut(s)	43, 145, 166, 378, 449
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	5 cut(s)	43, 45, 94, 145, 147
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	12, 26
CseI	GACGC	1 cut(s)	312
DdeI	CTNAG	5 cut(s)	194, 291, 309, 381, 420
DpnI	GATC	2 cut(s)	320, 351
DpnII	GATC	2 cut(s)	318, 349
DriI	GACNNNNNGTC	2 cut(s)	136, 409
Eam1105I	GACNNNNNGTC	2 cut(s)	136, 409
EciI	GGCGGA	2 cut(s)	269, 355
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	2 cut(s)	248, 269
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	184
FaiI	YATR	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	8 cut(s)	95, 162, 191, 245, 266, 299, 302, 338
FokI	GGATG	2 cut(s)	211, 342
Fsp4HI	GCNGC	8 cut(s)	95, 162, 191, 245, 266, 299, 302, 338
GlaI	GCGC	5 cut(s)	42, 44, 93, 144, 146
GluI	GCNGC	8 cut(s)	95, 162, 191, 245, 266, 299, 302, 338
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	236, 299
HaeIII	GGCC	4 cut(s)	14, 156, 281, 440
HapII	CCGG	5 cut(s)	10, 15, 24, 34, 153
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	5 cut(s)	43, 45, 94, 145, 147
Hin6I	GCGC	5 cut(s)	41, 43, 92, 143, 145
HinP1I	GCGC	5 cut(s)	41, 43, 92, 143, 145
HincII	GTYRAC	2 cut(s)	20, 288
HindII	GTYRAC	2 cut(s)	20, 288
HpaII	CCGG	5 cut(s)	10, 15, 24, 34, 153
Hpy166II	GTNNAC	4 cut(s)	20, 62, 288, 368
Hpy188I	TCNGA	8 cut(s)	106, 112, 124, 130, 173, 184, 277, 294
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	4 cut(s)	20, 62, 288, 368
Hpy99I	CGWCG	2 cut(s)	328, 412
HpyAV	CCTTC	2 cut(s)	383, 422
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 51, 74, 153, 211, 236, 310
HpyF3I	CTNAG	5 cut(s)	194, 291, 309, 381, 420
HspAI	GCGC	5 cut(s)	41, 43, 92, 143, 145
Kzo9I	GATC	2 cut(s)	318, 349
LmnI	GCTCC	5 cut(s)	122, 202, 211, 318, 431
LpnPI	CCDG	8 cut(s)	23, 28, 37, 47, 166, 200, 329, 373
Lsp1109I	GCAGC	4 cut(s)	81, 177, 285, 288
LweI	GCATC	2 cut(s)	64, 285
MalI	GATC	2 cut(s)	320, 351
MboI	GATC	2 cut(s)	318, 349
MboII	GAAGA	2 cut(s)	398, 405
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	7 cut(s)	101, 146, 194, 281, 283, 301, 398
MmeI	TCCRAC	2 cut(s)	129, 255
MspI	CCGG	5 cut(s)	10, 15, 24, 34, 153
MspR9I	CCNGG	2 cut(s)	11, 24
MvnI	CGCG	6 cut(s)	43, 92, 145, 164, 323, 337
MwoI	GCNNNNNNNGC	7 cut(s)	11, 51, 74, 153, 211, 236, 310
NciI	CCSGG	2 cut(s)	11, 24
NdeII	GATC	2 cut(s)	318, 349
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	3 cut(s)	103, 123, 307
PaeR7I	CTCGAG	2 cut(s)	248, 269
PauI	GCGCGC	2 cut(s)	41, 143
PfeI	GAWTC	4 cut(s)	83, 125, 174, 259
PkrI	GCNGC	8 cut(s)	96, 163, 192, 246, 267, 300, 303, 339
PleI	GAGTC	7 cut(s)	101, 145, 193, 280, 283, 301, 398
PpsI	GAGTC	7 cut(s)	101, 145, 193, 280, 283, 301, 398
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	12, 26
PspXI	VCTCGAGB	2 cut(s)	248, 269
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	298
PteI	GCGCGC	2 cut(s)	41, 143
SalI	GTCGAC	1 cut(s)	18
SatI	GCNGC	8 cut(s)	95, 162, 191, 245, 266, 299, 302, 338
Sau3AI	GATC	2 cut(s)	318, 349
Sau96I	GGNCC	2 cut(s)	12, 26
SchI	GAGTC	7 cut(s)	101, 146, 194, 281, 283, 301, 398
ScrFI	CCNGG	2 cut(s)	11, 24
SetI	ASST	7 cut(s)	119, 170, 216, 315, 382, 436, 449
SfaNI	GCATC	2 cut(s)	64, 285
SfcI	CTRYAG	1 cut(s)	302
Sfr274I	CTCGAG	2 cut(s)	248, 269
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	2 cut(s)	248, 269
SmlI	CTYRAG	3 cut(s)	248, 269, 442
SmoI	CTYRAG	3 cut(s)	248, 269, 442
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	7 cut(s)	52, 162, 244, 254, 265, 337, 340
StyD4I	CCNGG	2 cut(s)	9, 22
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	19, 249, 270
TasI	AATT	1 cut(s)	460
TauI	GCSGC	4 cut(s)	164, 247, 268, 340
TfiI	GAWTC	4 cut(s)	83, 125, 174, 259
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	4 cut(s)	94, 190, 298, 301
TspGWI	ACGGA	2 cut(s)	224, 385
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	26
XhoI	CTCGAG	2 cut(s)	248, 269
XmiI	GTMKAC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.