Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Reverse (-)

10740579 .. 10741877

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTGAATCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTCTTTGCCAGTATCTTTGTTGCAGGGGTTTATTTTGTTCGTGAACGTTCTCGGAGAAAGGAAGAGCCCCTAAAACTCATGAGGTCTGTGTCCATGGCTGTCCTCCATGGAGGGAAGCTGGCCTTGAAGAGATTGTTAGATTATCATGGAGCTCGAGCAGACAAATGTGCACTGAATTTAGCTGAATGTGAGTTGAAGACTCAACTTTTTAGTGAGAAACGCCCTGATTACAAGAAGCTGCAGTTGATTGTTACAAAGCTTGAGATGAGTGGAAAAGAAGCCGAGACAGTCGAGATATTAGAGAAAGCAAGAATAAAGGCGAAAAAGGAACAAAAATGGCATGAAGCATATGAAACTGAGATGTTACTTGTGGAAATGCTTATATACAAGGGTGATTACGAGAAGGCGCTCAAATGTGATTGCTTGAGTCATGAAGAGATCTCAGATGCAAGGCGACCACTCTACAAGGCCATCATTTACATTATGTCATCGTCAAAGCAGCCTGCCATACATCAGTGGGAAAAATTTATCCAGCTGAATCAAGCATTCCACTGTGAACCCAGTTTGGAGAAAGAGAGCTTGGAAGAAGCTCAACTCCATAACCTCATTTCGGACTTTAAAGAGTTTGAGAAGGTCGTCAACGTACTCAAAGATGATATAACAGAGGCGCAAGCCAAGCAGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

28.38

Weight (kDa)

8.77

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	223, 572
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	1 cut(s)	658
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	175, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	8 cut(s)	166, 200, 230, 286, 307, 583, 627, 638
AluI	AGCT	8 cut(s)	166, 200, 230, 286, 307, 583, 627, 638
Alw21I	GWGCWC	2 cut(s)	202, 220
Alw26I	GTCTC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	168, 516
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	286, 547
ApoI	RAATTY	2 cut(s)	223, 572
AspLEI	GCGC	2 cut(s)	457, 718
AsuHPI	GGTGA	2 cut(s)	16, 452
AvaI	CYCGRG	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	117, 202
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	202, 220
BbvI	GCAGC	2 cut(s)	273, 559
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	458
BfrI	CTTAAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	2 cut(s)	287, 548
BlsI	GCNGC	2 cut(s)	288, 549
BmeT110I	CYCGRG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	329, 493
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	141, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	57, 609
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	141, 154
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	396, 504
BseNI	ACTGG	2 cut(s)	57, 609
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	273, 559
BshFI	GGCC	2 cut(s)	170, 518
BsiHKAI	GWGCWC	2 cut(s)	202, 220
BsiHKCI	CYCGRG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	170, 518
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	117, 202, 220
Bsp143I	GATC	1 cut(s)	486
Bsp19I	CCATGG	2 cut(s)	141, 154
BspANI	GGCC	2 cut(s)	170, 518
BspCNI	CTCAG	2 cut(s)	397, 503
BspHI	TCATGA	2 cut(s)	126, 478
BspMAI	CTGCAG	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	57, 609
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	1 cut(s)	486
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	141, 154
Bst4CI	ACNGT	2 cut(s)	337, 602
Bst6I	CTCTTC	3 cut(s)	105, 170, 477
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	168, 552, 720
BstDEI	CTNAG	2 cut(s)	405, 490
BstDSI	CCRYGG	2 cut(s)	141, 154
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	2 cut(s)	457, 718
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 724
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	273, 559
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	170, 518
BtgI	CCRYGG	2 cut(s)	141, 154
BtsIMutI	CAGTG	3 cut(s)	218, 569, 598
Cac8I	GCNNGC	3 cut(s)	168, 552, 720
CciI	TCATGA	2 cut(s)	126, 478
CfoI	GCGC	2 cut(s)	457, 718
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	6 cut(s)	127, 142, 155, 194, 389, 479
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	2 cut(s)	405, 490
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
DraI	TTTAAA	1 cut(s)	667
Eam1104I	CTCTTC	3 cut(s)	105, 170, 477
EarI	CTCTTC	3 cut(s)	105, 170, 477
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	141, 154
Eco24I	GRGCYC	2 cut(s)	117, 202
Eco53kI	GAGCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	141, 154
EcoT38I	GRGCYC	2 cut(s)	117, 202
ErhI	CCWWGG	2 cut(s)	141, 154
FaeI	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	6 cut(s)	126, 141, 154, 193, 388, 478
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	287, 548
FriOI	GRGCYC	2 cut(s)	117, 202
Fsp4HI	GCNGC	2 cut(s)	287, 548
GlaI	GCGC	2 cut(s)	456, 717
GluI	GCNGC	2 cut(s)	287, 548
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	170, 518
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	457, 718
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
Hin6I	GCGC	2 cut(s)	455, 716
HinP1I	GCGC	2 cut(s)	455, 716
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	7, 247, 475, 586
HphI	GGTGA	2 cut(s)	16, 452
Hpy166II	GTNNAC	4 cut(s)	92, 218, 605, 688
Hpy188I	TCNGA	3 cut(s)	102, 493, 661
Hpy188III	TCNNGA	4 cut(s)	89, 127, 340, 479
Hpy8I	GTNNAC	4 cut(s)	92, 218, 605, 688
HpyAV	CCTTC	2 cut(s)	445, 673
HpyCH4III	ACNGT	2 cut(s)	337, 602
HpyCH4IV	ACGT	2 cut(s)	94, 690
HpyCH4V	TGCA	5 cut(s)	35, 71, 218, 289, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 724
HpyF3I	CTNAG	2 cut(s)	405, 490
HpySE526I	ACGT	2 cut(s)	94, 690
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
HspAI	GCGC	2 cut(s)	455, 716
Kzo9I	GATC	1 cut(s)	486
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	57, 70, 152, 285, 564, 593, 622
Lsp1109I	GCAGC	2 cut(s)	273, 559
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	2 cut(s)	94, 690
MaeIII	GTNAC	2 cut(s)	298, 411
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	5 cut(s)	122, 187, 256, 494, 644
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	3 cut(s)	117, 202, 220
MluCI	AATT	2 cut(s)	223, 572
MlyI	GAGTC	2 cut(s)	241, 484
MnlI	CCTC	5 cut(s)	123, 152, 161, 662, 706
MseI	TTAA	2 cut(s)	12, 666
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	53, 724
NcoI	CCATGG	2 cut(s)	141, 154
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	6 cut(s)	130, 145, 158, 197, 392, 482
NmeAIII	GCCGAG	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	2 cut(s)	126, 478
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	7, 586
PkrI	GCNGC	2 cut(s)	288, 549
PleI	GAGTC	2 cut(s)	241, 483
PpsI	GAGTC	2 cut(s)	241, 483
Psp124BI	GAGCTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	12, 666
SatI	GCNGC	2 cut(s)	287, 548
Sau3AI	GATC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	241, 484
SduI	GDGCHC	3 cut(s)	117, 202, 220
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	4 cut(s)	11, 201, 308, 472
SmoI	CTYRAG	4 cut(s)	11, 201, 308, 472
Sse9I	AATT	2 cut(s)	223, 572
SstI	GAGCTC	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	141, 154
TaaI	ACNGT	2 cut(s)	337, 602
TaiI	ACGT	2 cut(s)	97, 693
TaqI	TCGA	2 cut(s)	202, 339
TasI	AATT	2 cut(s)	223, 572
TfiI	GAWTC	2 cut(s)	7, 586
Tru1I	TTAA	2 cut(s)	12, 666
Tru9I	TTAA	2 cut(s)	12, 666
TscAI	CASTG	3 cut(s)	225, 569, 605
TseI	GCWGC	2 cut(s)	286, 547
TspDTI	ATGAA	3 cut(s)	405, 414, 495
TspRI	CASTG	3 cut(s)	225, 569, 605
Vha464I	CTTAAG	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	216
XapI	RAATTY	2 cut(s)	223, 572
XhoI	CTCGAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.