Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009665

Physical Location & Seq

Genomic Coordinates Forward (+)

4682896 .. 4686237

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07930.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGAAAACGGGTACTTCTAATGGCATAGCATGGGTTGAGAACATTTTCCAGAAGTTTGAAGATATGTACAATGACGTGGATGAACTAATGAAGCAGGCTGAAAGCCAGTTGGTGACAGCGGGTGCCACTGTTAAAAACTTTTTCTCAGAGTTAGACTTGATAGGAGATGCACTCCCTCAATTTTCAGAGGATAAAAAGCCAGGGGCTGCTCCTGATACATCTGTGGTACAGAAGATTGATGATGCAGTCGGTTTCAAGTCACTGGTGGGCAGTGATGGAGGCCACGGTGATAAAGTCCATGTAGACTCTGTGGAATTGGTTAAGAGCATTTCTTCATCATTGGAACAAATTGATGATTATATTGAGAAGAAGTTTCAGCTTCAGACACCTGACAAGATAGTTTCAAGCAATGCTAATCAAGAAATTGGATCGGATATTGGAACCAAATTGTTGATTCCAGCCTCAGATGATGTAGGAGGCTGTAAATCTTTCATGGAGAGAGAGGAAAGAAGTACAAACCTTGTTGATATGTCTTCAACATTTTCAAATGACAAGAAAGACTCGAGCAATGCAAATCAAGAAATTGGATTGGATAGTGGAGCCAAGTTGTTAATTCCAGCCTCAGATCAGTTAGATGATATAGGAGGGTTTAAGTTTTCCATGGAAACAGAGGAGGGAAGTAGAAACCTTGTTGATATGTCTTCAAAAATTTCAGATGAGACACGACCCTCTAACGCTCTTGAAGTGGACAATCCCTGTAAGAAAAGCACTGCAGCCAATTTGCCCACATCTGCAACAGAGCCTGATAAGCTTGAACTGTACGATGGTTCTAGTTGTGAAGAAGCAGAGACAACCATGCATATTCCCAGAAGTGAGCGAGATAATGATGTCACCGACTCAAGCTTACAAATTTTGGGACCATTGGAAAAGGTGGAGCTTGGTGAAAGTTGCATTTTAGTAGATTGTACTGAAGTTGAATGCAGTTCTGGTGAAGCTGCTAATCGCAGGTCTTACAAGAAAAAATTGAAGGACGCTTTTGCTTCAAAAATGAGACTATTGAAGAAGCACAATAATGAACAGGAGAGGAACAGGTTCTCAACACTTGCACTCCCTGAGAAATCAAATTCGCCTGATTATGAATTTTGTGAATCTGACTGGGAAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

42.81

Weight (kDa)

4.49

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07930 FvH4_3g07930 FvH4_3g07930 FvH4_3g07930
malus_domestica	MD10G1281200.v1.1
pyrus_communis	pycom10g23480
rosa_chinensis	RchiOBHm_Chr5g0010561
rosa_laevigata	RLG00000031762
rosa_multiflora	Rmu_co8115700.1_g000001 Rmu_sc0001429.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065770
rosa_rugosa	Rorug04G0451000 Rorug04G0451100 Rorug04G0451200 Rorug04G0451200 Rorug04G0451200
rosa_samantha	Rh5AG082700 Rh5BG077900 Rh5CG090500 Rh5DG077900
rosa_wichuraiana	Rw0G000710 Rw0G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	999
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	4 cut(s)	711, 912, 1126, 1142
AcuI	CTGAAG	2 cut(s)	368, 993
AfaI	GTAC	6 cut(s)	16, 71, 231, 517, 824, 970
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	382, 814, 906, 940, 998
AluI	AGCT	5 cut(s)	382, 814, 906, 940, 998
Alw26I	GTCTC	3 cut(s)	716, 845, 1048
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	2 cut(s)	209, 806
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	209, 776, 998
ApoI	RAATTY	4 cut(s)	711, 912, 1126, 1142
Asp700I	GAANNNNTTC	2 cut(s)	47, 1094
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	5 cut(s)	127, 302, 886, 956, 1004
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	920
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	528, 696
BbvI	GCAGC	3 cut(s)	196, 788, 985
BccI	CCATC	2 cut(s)	272, 821
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	716, 845, 1048
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	999
BisI	GCNGC	3 cut(s)	210, 777, 999
BlsI	GCNGC	3 cut(s)	211, 778, 1000
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	565
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	4 cut(s)	127, 445, 604, 921
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	1168
BmsI	GCATC	2 cut(s)	160, 235
BmuI	ACTGGG	1 cut(s)	1168
BpiI	GAAGAC	2 cut(s)	528, 696
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	886
BsaJI	CCNNGG	3 cut(s)	203, 286, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	1095, 1125
Bse1I	ACTGG	3 cut(s)	109, 270, 1163
Bse3DI	GCAATG	2 cut(s)	418, 577
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	203, 286, 663
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	418, 577
BseMII	CTCAG	4 cut(s)	162, 480, 639, 1107
BseNI	ACTGG	3 cut(s)	109, 270, 1163
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	3 cut(s)	196, 788, 985
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	933
BsmAI	GTCTC	3 cut(s)	716, 845, 1048
BsmFI	GGGAC	1 cut(s)	933
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	431, 628
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	4 cut(s)	161, 479, 638, 1108
BspLI	GGNNCC	4 cut(s)	127, 445, 604, 921
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	999
BspPI	GGATC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	418, 577
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	109, 270, 1163
BssECI	CCNNGG	3 cut(s)	203, 286, 663
BssMI	GATC	2 cut(s)	431, 628
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	133, 290, 822
BstAUI	TGTACA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	4 cut(s)	148, 466, 625, 1116
BstDSI	CCRYGG	2 cut(s)	286, 663
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	434, 631
BstMAI	GTCTC	3 cut(s)	716, 845, 1048
BstMBI	GATC	2 cut(s)	431, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	811
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	3 cut(s)	196, 788, 985
BstV2I	GAAGAC	2 cut(s)	528, 696
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	286, 663
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	280, 771
BtsIMutI	CAGTG	4 cut(s)	129, 263, 280, 771
BveI	ACCTGC	1 cut(s)	999
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	2 cut(s)	209, 806
Cfr13I	GGNCC	1 cut(s)	920
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	6 cut(s)	15, 70, 230, 516, 823, 969
CviAII	CATG	5 cut(s)	33, 302, 496, 664, 859
CviQI	GTAC	6 cut(s)	15, 70, 230, 516, 823, 969
DdeI	CTNAG	4 cut(s)	148, 466, 625, 1116
DpnI	GATC	2 cut(s)	433, 630
DpnII	GATC	2 cut(s)	431, 628
Eco130I	CCWWGG	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	368, 993
Eco88I	CYCGRG	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	5 cut(s)	36, 305, 499, 667, 862
FaqI	GGGAC	1 cut(s)	933
FatI	CATG	5 cut(s)	32, 301, 495, 663, 858
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	210, 777, 999
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	210, 777, 999
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	3 cut(s)	210, 777, 999
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	1043
Hin1II	CATG	5 cut(s)	36, 305, 499, 667, 862
HindIII	AAGCTT	2 cut(s)	812, 904
HinfI	GANTC	5 cut(s)	308, 457, 563, 899, 1151
HphI	GGTGA	5 cut(s)	127, 302, 886, 956, 1004
Hpy166II	GTNNAC	2 cut(s)	307, 751
Hpy188I	TCNGA	8 cut(s)	151, 190, 387, 436, 469, 628, 718, 1156
Hpy188III	TCNNGA	5 cut(s)	52, 215, 422, 581, 743
Hpy8I	GTNNAC	2 cut(s)	307, 751
HpyAV	CCTTC	1 cut(s)	1024
HpyCH4III	ACNGT	3 cut(s)	133, 290, 822
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	9 cut(s)	173, 248, 575, 776, 797, 862, 954, 984, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	811
HpyF3I	CTNAG	4 cut(s)	148, 466, 625, 1116
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	36, 305, 499, 667, 862
Kzo9I	GATC	2 cut(s)	431, 628
LmnI	GCTCC	3 cut(s)	217, 602, 937
Lsp1109I	GCAGC	3 cut(s)	196, 788, 985
LweI	GCATC	2 cut(s)	160, 235
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	115, 261, 892
MalI	GATC	2 cut(s)	433, 630
MboI	GATC	2 cut(s)	431, 628
MboII	GAAGA	8 cut(s)	74, 247, 327, 382, 528, 696, 854, 1075
MlyI	GAGTC	3 cut(s)	302, 557, 893
Mph1103I	ATGCAT	1 cut(s)	864
MroXI	GAANNNNTTC	2 cut(s)	47, 1094
MseI	TTAA	4 cut(s)	135, 324, 614, 654
MslI	CAYNNNNRTG	1 cut(s)	1074
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	811
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	2 cut(s)	431, 628
NlaIII	CATG	5 cut(s)	36, 305, 499, 667, 862
NlaIV	GGNNCC	4 cut(s)	127, 445, 604, 921
NmuCI	GTSAC	3 cut(s)	115, 261, 892
NsiI	ATGCAT	1 cut(s)	864
PaeR7I	CTCGAG	1 cut(s)	565
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	2 cut(s)	47, 1094
PfeI	GAWTC	2 cut(s)	457, 1151
PkrI	GCNGC	3 cut(s)	211, 778, 1000
PleI	GAGTC	3 cut(s)	302, 557, 893
PpsI	GAGTC	3 cut(s)	302, 557, 893
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	4 cut(s)	127, 445, 604, 921
PspPI	GGNCC	1 cut(s)	920
PspXI	VCTCGAGB	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	2 cut(s)	209, 806
RsaI	GTAC	6 cut(s)	16, 71, 231, 517, 824, 970
RsaNI	GTAC	6 cut(s)	15, 70, 230, 516, 823, 969
RseI	CAYNNNNRTG	1 cut(s)	1074
SaqAI	TTAA	4 cut(s)	135, 324, 614, 654
SatI	GCNGC	3 cut(s)	210, 777, 999
Sau3AI	GATC	2 cut(s)	431, 628
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	3 cut(s)	302, 557, 893
ScrFI	CCNGG	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	160, 235
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	920
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	2 cut(s)	565, 901
SmoI	CTYRAG	2 cut(s)	565, 901
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	133, 290, 822
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	566
TatI	WGTACW	3 cut(s)	69, 515, 968
TfiI	GAWTC	2 cut(s)	457, 1151
Tru1I	TTAA	4 cut(s)	135, 324, 614, 654
Tru9I	TTAA	4 cut(s)	135, 324, 614, 654
TscAI	CASTG	4 cut(s)	136, 270, 280, 778
TseFI	GTSAC	3 cut(s)	115, 261, 892
TseI	GCWGC	3 cut(s)	209, 776, 998
Tsp45I	GTSAC	3 cut(s)	115, 261, 892
TspDTI	ATGAA	6 cut(s)	99, 107, 327, 484, 1092, 1155
TspRI	CASTG	4 cut(s)	136, 270, 280, 778
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	4 cut(s)	711, 912, 1126, 1142
XhoI	CTCGAG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	47, 1094
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.