Rroxscaffold_1G00065770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009665
Physical Location & Seq
Forward (+)
87372470 .. 87375954
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065770.1

Sequence Viewer

Length: 1164 bp
ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTACCATGATGTGGATGAACTAGTGAAGCAGGCTGAAAGCCAGTTGGTGACAGTGGGTGCCAATGTTAAAAACTTTCTCGCAGAGTTAGACTTAATAGGAGATGCAGTCCCTCAATCTTCGGTGGATAAAAAGCCAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCAGTATAAAGTCGCTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCACATAGGTTCTGTGGAATCTGTTAAGAGCGTTTCTTCTGGTTTATCATTGGAACAAGTTAGTGATAATCAGACACCTAACAAGAAAGATTCAATCAATGCTAATCAAGAAATTGGATTGGATATTGGAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGAGAGTGTAACTCTTTCACGGAGCCAGAGGACAGAAGTACAAACCTTGTCGATATGTCTTCAAAATTTTCAGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGAAATTGGATTGGATAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATAGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTTAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAAGCACTGCAGGTAATGCTGCAGCTAATTTGCCCATATTTGCGACAGAGCCTGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAGAGACAACCATGCATTTTCCCGGAACTGAAGAGCCAGACAATGATGTTACCAACTCGGGCTTGCAAGCTTTGGGATCATTGAACAAGGTGGAGCTTGGTGAAAGTTGCATTGTAGTAGACTGTACTGAACTTGAATGCAGTTCTGGTGAAGCTGTTAAGCGCAGGTCTTACAAGAAAAAATTGAGGGACGCATTTGTTTCAAGAATGAGACTGTTGAAGAAGCAGAATAATGATGAACTGAGGAACAGTTTTGCAACACTCACACTCCCTGAGAAATCAAATTCGCCTGATTATGAATTTTTTGAATCCGACTGGGAACTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

41.96

Weight (kDa)

4.34

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 743, 990
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 954
AclWI GGATC 1 cut(s) 919
AcsI RAATTY 4 cut(s) 527, 687, 1117, 1133
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 5 cut(s) 71, 220, 231, 502, 961
AfiI CCNNNNNNNGG 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 88
AjnI CCWGG 2 cut(s) 202, 214
AluBI AGCT 4 cut(s) 767, 905, 931, 989
AluI AGCT 4 cut(s) 767, 905, 931, 989
Alw26I GTCTC 2 cut(s) 833, 1039
AlwI GGATC 1 cut(s) 919
AlwNI CAGNNNCTG 2 cut(s) 209, 794
Ama87I CYCGRG 2 cut(s) 550, 892
ApeKI GCWGC 3 cut(s) 209, 761, 764
ApoI RAATTY 4 cut(s) 527, 687, 1117, 1133
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 999
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 4 cut(s) 127, 302, 947, 995
AvaI CYCGRG 2 cut(s) 550, 892
AxyI CCTNAGG 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 242, 513
BbvI GCAGC 3 cut(s) 196, 748, 776
BccI CCATC 2 cut(s) 272, 287
BciT130I CCWGG 2 cut(s) 204, 216
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 2 cut(s) 833, 1039
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 2 cut(s) 89, 822
BfmI CTRYAG 2 cut(s) 750, 762
BfuAI ACCTGC 2 cut(s) 743, 990
BglI GCCNNNNNGGC 1 cut(s) 799
BisI GCNGC 3 cut(s) 210, 762, 765
BlsI GCNGC 3 cut(s) 211, 763, 766
Bme1390I CCNGG 3 cut(s) 204, 216, 858
BmeT110I CYCGRG 2 cut(s) 550, 892
BmiI GGNNCC 4 cut(s) 127, 430, 486, 589
BmrFI CCNGG 3 cut(s) 204, 216, 858
BmrI ACTGGG 1 cut(s) 1159
BmsI GCATC 2 cut(s) 160, 235
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 2 cut(s) 242, 513
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 858
BsaJI CCNNGG 2 cut(s) 203, 609
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 1086, 1116
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 109, 1154
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 204, 216
BseDI CCNNGG 2 cut(s) 203, 609
BseGI GGATG 2 cut(s) 88, 619
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 465, 786, 1067, 1098
BseNI ACTGG 2 cut(s) 109, 1154
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 196, 748, 776
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 2 cut(s) 550, 892
BsiSI CCGG 1 cut(s) 858
BslFI GGGAC 2 cut(s) 161, 1037
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 833, 1039
BsmFI GGGAC 2 cut(s) 161, 1037
BsmI GAATGC 1 cut(s) 977
BsoBI CYCGRG 2 cut(s) 550, 892
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 911
BspCNI CTCAG 4 cut(s) 464, 787, 1068, 1099
BspLI GGNNCC 4 cut(s) 127, 430, 486, 589
BspMAI CTGCAG 2 cut(s) 754, 766
BspMI ACCTGC 2 cut(s) 743, 990
BspPI GGATC 1 cut(s) 919
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 2 cut(s) 109, 1154
BssECI CCNNGG 2 cut(s) 203, 609
BssMI GATC 1 cut(s) 911
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 204, 216
Bst4CI ACNGT 5 cut(s) 121, 810, 959, 1050, 1085
Bst6I CTCTTC 1 cut(s) 861
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 99, 899, 903
BstDEI CTNAG 4 cut(s) 451, 795, 1076, 1107
BstF5I GGATG 2 cut(s) 88, 619
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 1 cut(s) 914
BstMAI GTCTC 2 cut(s) 833, 1039
BstMBI GATC 1 cut(s) 911
BstMWI GCNNNNNNNGC 2 cut(s) 758, 799
BstNI CCWGG 2 cut(s) 204, 216
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 3 cut(s) 202, 214, 856
BstSFI CTRYAG 2 cut(s) 750, 762
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 196, 748, 776
BstV2I GAAGAC 2 cut(s) 242, 513
Bsu36I CCTNAGG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 88, 619
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 3 cut(s) 126, 273, 747
BveI ACCTGC 2 cut(s) 743, 990
Cac8I GCNNGC 3 cut(s) 99, 899, 903
CaiI CAGNNNCTG 2 cut(s) 209, 794
CfoI GCGC 1 cut(s) 999
CseI GACGC 1 cut(s) 1034
Csp6I GTAC 5 cut(s) 70, 219, 230, 501, 960
CviAII CATG 5 cut(s) 33, 74, 640, 700, 847
CviQI GTAC 5 cut(s) 70, 219, 230, 501, 960
DdeI CTNAG 4 cut(s) 451, 795, 1076, 1107
DpnI GATC 1 cut(s) 913
DpnII GATC 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 885
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 2 cut(s) 550, 892
EcoRII CCWGG 2 cut(s) 202, 214
EcoT14I CCWWGG 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 5 cut(s) 36, 77, 643, 703, 850
FaqI GGGAC 2 cut(s) 161, 1037
FatI CATG 5 cut(s) 32, 73, 639, 699, 846
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 3 cut(s) 210, 762, 765
FokI GGATG 2 cut(s) 95, 626
Fsp4HI GCNGC 3 cut(s) 210, 762, 765
FspBI CTAG 2 cut(s) 89, 822
GlaI GCGC 1 cut(s) 998
GluI GCNGC 3 cut(s) 210, 762, 765
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 1 cut(s) 858
HgaI GACGC 1 cut(s) 1034
HhaI GCGC 1 cut(s) 999
Hin1II CATG 5 cut(s) 36, 77, 643, 703, 850
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 7 cut(s) 297, 317, 389, 548, 705, 833, 1142
HpaII CCGG 1 cut(s) 858
HphI GGTGA 4 cut(s) 127, 302, 947, 995
Hpy166II GTNNAC 2 cut(s) 301, 955
Hpy188I TCNGA 5 cut(s) 372, 454, 535, 838, 1147
Hpy188III TCNNGA 4 cut(s) 52, 407, 719, 1038
Hpy8I GTNNAC 2 cut(s) 301, 955
HpyCH4III ACNGT 5 cut(s) 121, 810, 959, 1050, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 758, 799
HpyF3I CTNAG 4 cut(s) 451, 795, 1076, 1107
Hsp92II CATG 5 cut(s) 36, 77, 643, 703, 850
HspAI GCGC 1 cut(s) 997
Kzo9I GATC 1 cut(s) 911
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 5 cut(s) 217, 428, 484, 587, 928
Lsp1109I GCAGC 3 cut(s) 196, 748, 776
LweI GCATC 2 cut(s) 160, 235
MaeI CTAG 2 cut(s) 89, 822
MaeIII GTNAC 3 cut(s) 115, 470, 883
MalI GATC 1 cut(s) 913
MboI GATC 1 cut(s) 911
MboII GAAGA 9 cut(s) 74, 177, 247, 327, 513, 553, 578, 878, 1066
MhlI GDGCHC 1 cut(s) 275
MlyI GAGTC 3 cut(s) 306, 542, 699
Mph1103I ATGCAT 1 cut(s) 852
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 3 cut(s) 204, 216, 858
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 2 cut(s) 204, 216
MwoI GCNNNNNNNGC 2 cut(s) 758, 799
NciI CCSGG 1 cut(s) 858
NdeII GATC 1 cut(s) 911
NlaIII CATG 5 cut(s) 36, 77, 643, 703, 850
NlaIV GGNNCC 4 cut(s) 127, 430, 486, 589
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 852
NspI RCATGY 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 861
PctI GAATGC 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 4 cut(s) 317, 389, 833, 1142
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 3 cut(s) 211, 763, 766
PleI GAGTC 3 cut(s) 305, 542, 699
PpsI GAGTC 3 cut(s) 305, 542, 699
Psp6I CCWGG 2 cut(s) 202, 214
PspGI CCWGG 2 cut(s) 202, 214
PspN4I GGNNCC 4 cut(s) 127, 430, 486, 589
PspXI VCTCGAGB 1 cut(s) 550
PstI CTGCAG 2 cut(s) 754, 766
PstNI CAGNNNCTG 2 cut(s) 209, 794
RsaI GTAC 5 cut(s) 71, 220, 231, 502, 961
RsaNI GTAC 5 cut(s) 70, 219, 230, 501, 960
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
SatI GCNGC 3 cut(s) 210, 762, 765
Sau3AI GATC 1 cut(s) 911
SchI GAGTC 3 cut(s) 306, 542, 699
ScrFI CCNGG 3 cut(s) 204, 216, 858
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 160, 235
SfcI CTRYAG 2 cut(s) 750, 762
Sfr274I CTCGAG 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SpeI ACTAGT 1 cut(s) 88
SspMI CTAG 2 cut(s) 89, 822
StyD4I CCNGG 3 cut(s) 202, 214, 856
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 5 cut(s) 121, 810, 959, 1050, 1085
TaqI TCGA 2 cut(s) 513, 551
TatI WGTACW 2 cut(s) 500, 959
TfiI GAWTC 4 cut(s) 317, 389, 833, 1142
Tru1I TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
Tru9I TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
TscAI CASTG 3 cut(s) 126, 280, 754
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 209, 761, 764
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 6 cut(s) 99, 579, 628, 846, 1086, 1146
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 3 cut(s) 126, 280, 754
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 4 cut(s) 527, 687, 1117, 1133
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 954
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 89, 822
Zsp2I ATGCAT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.