Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009665

Physical Location & Seq

Genomic Coordinates Reverse (-)

7155492 .. 7159051

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTACCATGATGTGGATGAACTAGTGAAGCAGGCTGAAAGCCAGTTGGTGACAGTGGGTGCCAATGTTAAAAACTTTTTTGCAGAGTTAGACTTAATAGGAGATGCAGTCCCTCAATCTTCGGTGGATAAAAAGCCAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCAGTATAAAGTCACTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCACATAGGTTCTGTGGAATCTGTTAAGAGCGTTTCTTCTGGTTTATCATTGGAACAAGTTAGTGATAATCAGACACCTGACAAGAAAGATTCAATCAATGCTAATCAAGAAATTGGATTGGATATTGGAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGAGAGTGTAACTCTTTCACGGAGGCAGAGGACAGAAGTACAAACCTTGTCGATATGTCTTCAAAATTTTCAGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGAAATTGGATTGGACAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATTGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTCAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAAGCACTGCAGGTAATACTGCAGCTAATTTGCCCATATTTGCAACAGAGCCCGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAGAGACAACCATGCATTTTCCCGGAACTGGTAATTCATCATTTCATCAATCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

31.72

Weight (kDa)

4.22

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07930 FvH4_3g07930 FvH4_3g07930 FvH4_3g07930
malus_domestica	MD10G1281200.v1.1
pyrus_communis	pycom10g23480
rosa_chinensis	RchiOBHm_Chr5g0010561
rosa_laevigata	RLG00000031762
rosa_multiflora	Rmu_co8115700.1_g000001 Rmu_sc0001429.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065770
rosa_rugosa	Rorug04G0451000 Rorug04G0451100 Rorug04G0451200 Rorug04G0451200 Rorug04G0451200
rosa_samantha	Rh5AG082700 Rh5BG077900 Rh5CG090500 Rh5DG077900
rosa_wichuraiana	Rw0G000710 Rw0G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	527, 687
AfaI	GTAC	4 cut(s)	71, 220, 231, 502
AfiI	CCNNNNNNNGG	2 cut(s)	79, 863
AgsI	TTSAA	6 cut(s)	62, 393, 525, 684, 722, 806
AhlI	ACTAGT	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	202, 214
AluBI	AGCT	1 cut(s)	767
AluI	AGCT	1 cut(s)	767
Alw26I	GTCTC	1 cut(s)	833
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	2 cut(s)	550, 794
ApeKI	GCWGC	2 cut(s)	209, 764
ApoI	RAATTY	2 cut(s)	527, 687
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	858
AsuHPI	GGTGA	2 cut(s)	127, 302
AvaI	CYCGRG	2 cut(s)	550, 794
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	2 cut(s)	242, 513
BbvI	GCAGC	2 cut(s)	196, 776
BccI	CCATC	2 cut(s)	272, 287
BciT130I	CCWGG	2 cut(s)	204, 216
BcnI	CCSGG	1 cut(s)	858
BcoDI	GTCTC	1 cut(s)	833
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	2 cut(s)	89, 822
BfmI	CTRYAG	2 cut(s)	750, 762
BfuAI	ACCTGC	1 cut(s)	743
BglI	GCCNNNNNGGC	1 cut(s)	799
BisI	GCNGC	2 cut(s)	210, 765
BlsI	GCNGC	2 cut(s)	211, 766
Bme1390I	CCNGG	3 cut(s)	204, 216, 858
BmeT110I	CYCGRG	2 cut(s)	550, 794
BmiI	GGNNCC	3 cut(s)	127, 430, 589
BmrFI	CCNGG	3 cut(s)	204, 216, 858
BmsI	GCATC	2 cut(s)	160, 235
BpiI	GAAGAC	2 cut(s)	242, 513
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	858
BsaJI	CCNNGG	3 cut(s)	203, 609, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 863
Bse1I	ACTGG	3 cut(s)	109, 270, 868
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	204, 216
BseDI	CCNNGG	3 cut(s)	203, 609, 795
BseGI	GGATG	2 cut(s)	88, 619
BseLI	CCNNNNNNNGG	2 cut(s)	79, 863
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	109, 270, 868
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	196, 776
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	2 cut(s)	550, 794
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	79, 863
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	550, 794
Bsp1286I	GDGCHC	2 cut(s)	275, 795
BspCNI	CTCAG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	127, 430, 589
BspMAI	CTGCAG	2 cut(s)	754, 766
BspMI	ACCTGC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	3 cut(s)	109, 270, 868
BssECI	CCNNGG	3 cut(s)	203, 609, 795
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	204, 216
Bst4CI	ACNGT	3 cut(s)	121, 584, 810
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	88, 619
BstMAI	GTCTC	1 cut(s)	833
BstMWI	GCNNNNNNNGC	1 cut(s)	799
BstNI	CCWGG	2 cut(s)	204, 216
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	202, 214, 856
BstSFI	CTRYAG	2 cut(s)	750, 762
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	196, 776
BstV2I	GAAGAC	2 cut(s)	242, 513
BtsCI	GGATG	2 cut(s)	88, 619
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	5 cut(s)	126, 263, 273, 589, 747
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	70, 219, 230, 501
CviAII	CATG	5 cut(s)	33, 74, 640, 700, 847
CviQI	GTAC	4 cut(s)	70, 219, 230, 501
DdeI	CTNAG	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	795
Eco88I	CYCGRG	2 cut(s)	550, 794
EcoRII	CCWGG	2 cut(s)	202, 214
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	5 cut(s)	36, 77, 643, 703, 850
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	32, 73, 639, 699, 846
Fnu4HI	GCNGC	2 cut(s)	210, 765
FokI	GGATG	2 cut(s)	95, 626
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	210, 765
FspBI	CTAG	2 cut(s)	89, 822
GluI	GCNGC	2 cut(s)	210, 765
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	858
Hin1II	CATG	5 cut(s)	36, 77, 643, 703, 850
HinfI	GANTC	6 cut(s)	297, 317, 389, 548, 705, 833
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	2 cut(s)	127, 302
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	372, 454, 535, 694, 838
Hpy188III	TCNNGA	3 cut(s)	52, 407, 719
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	3 cut(s)	121, 584, 810
HpyCH4V	TGCA	8 cut(s)	149, 173, 248, 560, 752, 764, 785, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	799
HpyF3I	CTNAG	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	36, 77, 643, 703, 850
LmnI	GCTCC	3 cut(s)	217, 428, 587
Lsp1109I	GCAGC	2 cut(s)	196, 776
LweI	GCATC	2 cut(s)	160, 235
MaeI	CTAG	2 cut(s)	89, 822
MaeIII	GTNAC	3 cut(s)	115, 261, 470
MboII	GAAGA	7 cut(s)	74, 177, 247, 327, 513, 553, 578
MhlI	GDGCHC	2 cut(s)	275, 795
MluCI	AATT	9 cut(s)	411, 434, 441, 527, 570, 600, 687, 769, 868
MlyI	GAGTC	3 cut(s)	306, 542, 699
MnlI	CCTC	9 cut(s)	189, 262, 275, 460, 478, 484, 617, 643, 790
Mph1103I	ATGCAT	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	6 cut(s)	135, 161, 324, 440, 599, 630
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	3 cut(s)	204, 216, 858
MvaI	CCWGG	2 cut(s)	204, 216
MwoI	GCNNNNNNNGC	1 cut(s)	799
NciI	CCSGG	1 cut(s)	858
NlaIII	CATG	5 cut(s)	36, 77, 643, 703, 850
NlaIV	GGNNCC	3 cut(s)	127, 430, 589
NmuCI	GTSAC	2 cut(s)	115, 261
NsiI	ATGCAT	1 cut(s)	852
NspI	RCATGY	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	317, 389, 833
PflMI	CCANNNNNTGG	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	211, 766
PleI	GAGTC	3 cut(s)	305, 542, 699
PpsI	GAGTC	3 cut(s)	305, 542, 699
Psp6I	CCWGG	2 cut(s)	202, 214
PspGI	CCWGG	2 cut(s)	202, 214
PspN4I	GGNNCC	3 cut(s)	127, 430, 589
PspXI	VCTCGAGB	1 cut(s)	550
PstI	CTGCAG	2 cut(s)	754, 766
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	4 cut(s)	71, 220, 231, 502
RsaNI	GTAC	4 cut(s)	70, 219, 230, 501
SaqAI	TTAA	6 cut(s)	135, 161, 324, 440, 599, 630
SatI	GCNGC	2 cut(s)	210, 765
SchI	GAGTC	3 cut(s)	306, 542, 699
ScrFI	CCNGG	3 cut(s)	204, 216, 858
SduI	GDGCHC	2 cut(s)	275, 795
SetI	ASST	6 cut(s)	310, 379, 510, 669, 757, 769
SfaNI	GCATC	2 cut(s)	160, 235
SfcI	CTRYAG	2 cut(s)	750, 762
Sfr274I	CTCGAG	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SpeI	ACTAGT	1 cut(s)	88
Sse9I	AATT	9 cut(s)	411, 434, 441, 527, 570, 600, 687, 769, 868
SspMI	CTAG	2 cut(s)	89, 822
StyD4I	CCNGG	3 cut(s)	202, 214, 856
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	121, 584, 810
TaqI	TCGA	2 cut(s)	513, 551
TasI	AATT	9 cut(s)	411, 434, 441, 527, 570, 600, 687, 769, 868
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	317, 389, 833
Tru1I	TTAA	6 cut(s)	135, 161, 324, 440, 599, 630
Tru9I	TTAA	6 cut(s)	135, 161, 324, 440, 599, 630
TscAI	CASTG	5 cut(s)	126, 270, 280, 589, 754
TseFI	GTSAC	2 cut(s)	115, 261
TseI	GCWGC	2 cut(s)	209, 764
Tsp45I	GTSAC	2 cut(s)	115, 261
TspDTI	ATGAA	6 cut(s)	99, 579, 628, 846, 861, 869
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	5 cut(s)	126, 270, 280, 589, 754
Van91I	CCANNNNNTGG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	527, 687
XceI	RCATGY	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	89, 822
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.