Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009665

Physical Location & Seq

Genomic Coordinates Forward (+)

37193488 .. 37196519

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1281200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATACGAGTTGTAAAGGCATATCATGGTTTGGGAACTTATACCAGAAGTTTGAAGATTTGTGCCGGGAGGCGGAGGAAATAATGCAACAGGAAGTAATTGAACCTGCTATAAGCCAGTTGGAGACATTTAATGAGAATTTTGAAAACCTTCTCTCCCTGTCAGAACCTATAGGAGATGCACTCGGTCAATCTTCAGTGGATATAGAGGAAGGGGCAGCTCCCGATTCATCTCTTCCACAAAACGCTAGTGATGCAGCCTGTGTAAAATCACCGGCAGGCACTGATGAAGACTGTGATAAAAGGTCATTAGATGACGCGTACAGAGTCCACTTAAGCTCTGTGGAATTCGTAAAGAACGTTTCCTGTGGTTTATCGTTGGAAGAAACTGATGCCCTAGAAATATCAAGCCAAGAAATTGAATTGGATGGTGGAGGGAATATATTAATCCCAGCCTCGGATGATGCAGGAGGGTGTAACTCTCTTGTGGAAACAGGGGACAGAAGTGGTAACCATGCTGACATGCCTTCTAAAATTTCAGATGACATACAATTTTGCAATGCTGTTAACTCTGTAGAACCTGGTAAAAGAAGCCCTGCGGGCATTGGATCTTGTCCTGCCACCGATGCCCTAGAAATATCCAGTTCCTGCTTGACCACGGATGCGACAGTTTCTCCTCCTGGTGGGATTGAACTGCACAAAAGTTTTGATGAATCAAAATCTGCCGTGCCTTTGCCAGTGTGTGACAGTTCTGATGAATCAGGGTCTACCATGCCTTTTCCAGAAAGTGAAGAGCAGGATAATGACGTTACCAAGTCAGTCTTACAGACTTCACAATCATTGAATACGCTAAAGCTTGATAAAAGTTGCATTTTAGTAGATGGTAGCGGAATTCAATCCATTTCTTGTCAAGACGCAAAATGCAGGTCTTACAAGAAACTGAAGGACGCATTTGCTTCGAGAATGAGATTATTGAAGAAGCGCAACCATAAGCAGCCTGCAGATTGGTCCGGAGATCTTGACGCAGGATTTGATCAACAGAAAGGGAAAAGCTTCACAACAACCGCAGTCGTTGAGAAATCTAGTTCACCGGATTACGAATTTTCTGAGTCCGAGTGGGAGATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

40.36

Weight (kDa)

4.27

Isoelectric Point (pI)

70.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07930 FvH4_3g07930 FvH4_3g07930 FvH4_3g07930
malus_domestica	MD10G1281200.v1.1
pyrus_communis	pycom10g23480
rosa_chinensis	RchiOBHm_Chr5g0010561
rosa_laevigata	RLG00000031762
rosa_multiflora	Rmu_co8115700.1_g000001 Rmu_sc0001429.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065770
rosa_rugosa	Rorug04G0451000 Rorug04G0451100 Rorug04G0451200 Rorug04G0451200 Rorug04G0451200
rosa_samantha	Rh5AG082700 Rh5BG077900 Rh5CG090500 Rh5DG077900
rosa_wichuraiana	Rw0G000710 Rw0G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	115, 915
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	1010
AciI	CCGC	4 cut(s)	74, 599, 888, 1065
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	5 cut(s)	139, 347, 534, 891, 1100
AcuI	CTGAAG	2 cut(s)	180, 962
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	73, 457, 683
AflII	CTTAAG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	8 cut(s)	56, 104, 146, 422, 692, 844, 896, 976
AjnI	CCWGG	2 cut(s)	580, 679
AluBI	AGCT	4 cut(s)	221, 339, 856, 1053
AluI	AGCT	4 cut(s)	221, 339, 856, 1053
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	616
AlwNI	CAGNNNCTG	2 cut(s)	284, 648
Aor13HI	TCCGGA	1 cut(s)	1010
ApeKI	GCWGC	3 cut(s)	218, 257, 994
ApoI	RAATTY	5 cut(s)	139, 347, 534, 891, 1100
ArsI	GACNNNNNNTTYG	4 cut(s)	911, 943, 1013, 1045
AseI	ATTAAT	1 cut(s)	446
Asp700I	GAANNNNTTC	2 cut(s)	150, 1052
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	1 cut(s)	1008
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	264, 1080
AvaII	GGWCC	1 cut(s)	1008
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	230, 269, 1006
BccI	CCATC	2 cut(s)	422, 875
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	939, 973
BciT130I	CCWGG	2 cut(s)	582, 681
BclI	TGATCA	1 cut(s)	1033
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	4 cut(s)	249, 398, 632, 1083
BfmI	CTRYAG	3 cut(s)	171, 573, 999
BfrI	CTTAAG	1 cut(s)	334
BfuAI	ACCTGC	2 cut(s)	115, 915
BglI	GCCNNNNNGGC	1 cut(s)	600
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	219, 258, 995
BlsI	GCNGC	3 cut(s)	220, 259, 996
Bme1390I	CCNGG	3 cut(s)	68, 582, 681
Bme18I	GGWCC	1 cut(s)	1008
BmgT120I	GGNCC	1 cut(s)	1008
BmrFI	CCNGG	3 cut(s)	68, 582, 681
BmsI	GCATC	6 cut(s)	169, 244, 382, 454, 616, 652
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpuMI	CCSGG	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	456, 657
BsaWI	WCCGGW	2 cut(s)	1010, 1090
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 457, 683
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	118, 642, 737
Bse3DI	GCAATG	1 cut(s)	565
BseAI	TCCGGA	1 cut(s)	1010
BseBI	CCWGG	2 cut(s)	582, 681
BseDI	CCNNGG	2 cut(s)	456, 657
BseGI	GGATG	3 cut(s)	433, 466, 667
BseLI	CCNNNNNNNGG	3 cut(s)	73, 457, 683
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	1 cut(s)	1098
BseNI	ACTGG	3 cut(s)	118, 642, 737
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	230, 269, 1006
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	67, 275, 1011, 1091
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	3 cut(s)	73, 457, 683
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	1010
Bsp143I	GATC	3 cut(s)	608, 1015, 1033
BspACI	CCGC	4 cut(s)	74, 599, 888, 1065
BspCNI	CTCAG	1 cut(s)	1099
BspEI	TCCGGA	1 cut(s)	1010
BspFNI	CGCG	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	1003
BspMI	ACCTGC	2 cut(s)	115, 915
BspPI	GGATC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	786
BspTI	CTTAAG	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	118, 642, 737
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	456, 657
BssMI	GATC	3 cut(s)	608, 1015, 1033
Bst2UI	CCWGG	2 cut(s)	582, 681
Bst4CI	ACNGT	3 cut(s)	296, 670, 749
Bst6I	CTCTTC	2 cut(s)	240, 786
BstAFI	CTTAAG	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	280, 601, 999
BstDEI	CTNAG	1 cut(s)	1107
BstDSI	CCRYGG	1 cut(s)	657
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	433, 466, 667
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	3 cut(s)	611, 1018, 1036
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	608, 1015, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
BstNI	CCWGG	2 cut(s)	582, 681
BstNSI	RCATGY	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	66, 580, 679
BstSFI	CTRYAG	3 cut(s)	171, 573, 999
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	230, 269, 1006
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	608, 1015
BstYI	RGATCY	2 cut(s)	608, 1015
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	433, 466, 667
BtsIMutI	CAGTG	3 cut(s)	204, 282, 744
BveI	ACCTGC	2 cut(s)	115, 915
Cac8I	GCNNGC	3 cut(s)	280, 601, 999
CaiI	CAGNNNCTG	2 cut(s)	284, 648
CfoI	GCGC	1 cut(s)	984
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	1008
CseI	GACGC	4 cut(s)	326, 923, 956, 1031
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	27, 515, 523, 772
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	1107
DpnI	GATC	3 cut(s)	610, 1017, 1035
DpnII	GATC	3 cut(s)	608, 1015, 1033
Eam1104I	CTCTTC	2 cut(s)	240, 786
EarI	CTCTTC	2 cut(s)	240, 786
EciI	GGCGGA	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	1008
Eco57I	CTGAAG	2 cut(s)	180, 962
Eco91I	GGTNACC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	2 cut(s)	347, 891
EcoRII	CCWGG	2 cut(s)	580, 679
FaeI	CATG	4 cut(s)	30, 518, 526, 775
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	26, 514, 522, 771
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	1033
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	3 cut(s)	219, 258, 995
FokI	GGATG	3 cut(s)	440, 473, 674
Fsp4HI	GCNGC	3 cut(s)	219, 258, 995
FspBI	CTAG	4 cut(s)	249, 398, 632, 1083
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	3 cut(s)	219, 258, 995
GsaI	CCCAGC	1 cut(s)	455
HapII	CCGG	4 cut(s)	67, 275, 1011, 1091
HgaI	GACGC	4 cut(s)	326, 923, 956, 1031
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	4 cut(s)	30, 518, 526, 775
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	2 cut(s)	854, 1051
HinfI	GANTC	5 cut(s)	227, 327, 713, 758, 1109
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	4 cut(s)	67, 275, 1011, 1091
HphI	GGTGA	2 cut(s)	264, 1080
Hpy166II	GTNNAC	4 cut(s)	331, 568, 768, 1088
Hpy188I	TCNGA	6 cut(s)	166, 460, 541, 754, 1108, 1114
Hpy188III	TCNNGA	6 cut(s)	224, 782, 911, 960, 1011, 1019
Hpy8I	GTNNAC	4 cut(s)	331, 568, 768, 1088
HpyAV	CCTTC	4 cut(s)	161, 206, 537, 937
HpyCH4III	ACNGT	3 cut(s)	296, 670, 749
HpyCH4IV	ACGT	2 cut(s)	360, 807
HpyCH4V	TGCA	9 cut(s)	88, 182, 257, 467, 558, 697, 870, 924, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
HpyF3I	CTNAG	1 cut(s)	1107
HpySE526I	ACGT	2 cut(s)	360, 807
Hsp92II	CATG	4 cut(s)	30, 518, 526, 775
HspAI	GCGC	1 cut(s)	982
Kpn2I	TCCGGA	1 cut(s)	1010
Ksp22I	TGATCA	1 cut(s)	1033
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	608, 1015, 1033
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	3 cut(s)	230, 269, 1006
LweI	GCATC	6 cut(s)	169, 244, 382, 454, 616, 652
MabI	ACCWGGT	1 cut(s)	580
MaeI	CTAG	4 cut(s)	249, 398, 632, 1083
MaeII	ACGT	2 cut(s)	360, 807
MaeIII	GTNAC	4 cut(s)	476, 509, 743, 808
MalI	GATC	3 cut(s)	610, 1017, 1035
MboI	GATC	3 cut(s)	608, 1015, 1033
MboII	GAAGA	7 cut(s)	68, 186, 227, 302, 395, 803, 988
MflI	RGATCY	2 cut(s)	608, 1015
MluCI	AATT	9 cut(s)	99, 139, 347, 417, 422, 534, 551, 891, 1100
MluI	ACGCGT	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	336, 1118
MmeI	TCCRAC	2 cut(s)	102, 360
MnlI	CCTC	7 cut(s)	64, 70, 202, 428, 464, 466, 687
MroI	TCCGGA	1 cut(s)	1010
MroXI	GAANNNNTTC	2 cut(s)	150, 1052
MseI	TTAA	4 cut(s)	132, 335, 446, 567
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	4 cut(s)	67, 275, 1011, 1091
MspR9I	CCNGG	3 cut(s)	68, 582, 681
MvaI	CCWGG	2 cut(s)	582, 681
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	608, 1015, 1033
NlaIII	CATG	4 cut(s)	30, 518, 526, 775
NmuCI	GTSAC	1 cut(s)	743
NspI	RCATGY	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdmI	GAANNNNTTC	2 cut(s)	150, 1052
PfeI	GAWTC	3 cut(s)	227, 713, 758
PkrI	GCNGC	3 cut(s)	220, 259, 996
PleI	GAGTC	2 cut(s)	335, 1117
PpsI	GAGTC	2 cut(s)	335, 1117
PshBI	ATTAAT	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	580, 679
PspEI	GGTNACC	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	2 cut(s)	580, 679
PspPI	GGNCC	1 cut(s)	1008
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	2 cut(s)	284, 648
PsuI	RGATCY	2 cut(s)	608, 1015
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	4 cut(s)	132, 335, 446, 567
SatI	GCNGC	3 cut(s)	219, 258, 995
Sau3AI	GATC	3 cut(s)	608, 1015, 1033
Sau96I	GGNCC	1 cut(s)	1008
SchI	GAGTC	2 cut(s)	336, 1118
ScrFI	CCNGG	3 cut(s)	68, 582, 681
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	6 cut(s)	169, 244, 382, 454, 616, 652
SfcI	CTRYAG	3 cut(s)	171, 573, 999
SinI	GGWCC	1 cut(s)	1008
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	9 cut(s)	99, 139, 347, 417, 422, 534, 551, 891, 1100
SsiI	CCGC	4 cut(s)	74, 599, 888, 1065
SspMI	CTAG	4 cut(s)	249, 398, 632, 1083
StyD4I	CCNGG	3 cut(s)	66, 580, 679
TaaI	ACNGT	3 cut(s)	296, 670, 749
TaiI	ACGT	2 cut(s)	363, 810
TaqI	TCGA	1 cut(s)	959
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	9 cut(s)	99, 139, 347, 417, 422, 534, 551, 891, 1100
TfiI	GAWTC	3 cut(s)	227, 713, 758
Tru1I	TTAA	4 cut(s)	132, 335, 446, 567
Tru9I	TTAA	4 cut(s)	132, 335, 446, 567
TscAI	CASTG	3 cut(s)	204, 289, 744
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	3 cut(s)	218, 257, 994
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	4 cut(s)	219, 303, 726, 771
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	3 cut(s)	204, 289, 744
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	1008
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	5 cut(s)	139, 347, 534, 891, 1100
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	767
XmnI	GAANNNNTTC	2 cut(s)	150, 1052
XspI	CTAG	4 cut(s)	249, 398, 632, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.