RLG00000031762

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009665
Physical Location & Seq
Reverse (-)
8088111 .. 8090223
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031762

Sequence Viewer

Length: 1167 bp
ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTACCATGATGTGGATGAAATAGTGAAGCAGGCTGAAAGCCAGTTGGTGACAGTGGGTGCCAATGTTAAAAACTTTTTCGCAGAGTTAGACTTAATAGGAGATGCAGTCCCTCAATCTTTGGTGGATAAAAAGCCAGCAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCGGTATAAAGTCGCTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCACATAGGTTCTGTGGAATCTGTTAAGAGCGTTTCTTCTGGTTTATCATTGGAACAAGTTGATTATAATCAGACACCTGACAAGAAAGATTCAATGAATGCTAATCAAGAAATTGGATTGGATATTGGAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGAGAGTGTAACTCTTTCACGGAGCCAGAGGACAGAAGTACAAACCTTGTCGATATGTCTTCAAAATTTTCTGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGAAATTGGATTGGACAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATAGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTCAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAAGCACTGCAGGTAATACTGCAGCTAATTTGCCCATATTTGCAACAGAGCCCGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAGAGACAACCATGCATTTTCCCGGAACTGAAGAGCCAGACAATGATGTTACCAGCTCGTGCTTGCAAACTTTGGGATCATTGAACAAGGTGGAGCTTGGTGAAAGTTGCATTGTAGTAGACTGTACTGAACTTGAATGCAGTTCTGGTGAAGCTGTTAAGCGCAGGTCTTACAAGAAAAAATTGAGGGACGCATTTGTTTCAAGAATGAGATTGTTGAAGAAGCAGAATAATGATGAACTGAGGAACAGTTTTGCAATGCTCACACTCCCTGAGAAATCAAATTCGCCTGATTATGAATTTTATGAATCCGACTGGGAAATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.26

Weight (kDa)

4.33

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc36I ACCTGC 2 cut(s) 746, 993
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 957
AclWI GGATC 1 cut(s) 922
AcsI RAATTY 4 cut(s) 530, 690, 1120, 1136
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 5 cut(s) 71, 223, 234, 505, 964
AfiI CCNNNNNNNGG 1 cut(s) 79
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 4 cut(s) 770, 894, 934, 992
AluI AGCT 4 cut(s) 770, 894, 934, 992
Alw26I GTCTC 1 cut(s) 836
AlwI GGATC 1 cut(s) 922
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 553, 797
ApeKI GCWGC 2 cut(s) 212, 767
ApoI RAATTY 4 cut(s) 530, 690, 1120, 1136
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 1002
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 4 cut(s) 127, 305, 950, 998
AvaI CYCGRG 2 cut(s) 553, 797
BaeGI GKGCMC 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 895
BbsI GAAGAC 2 cut(s) 245, 516
BbvI GCAGC 2 cut(s) 199, 779
BccI CCATC 2 cut(s) 275, 290
BciT130I CCWGG 1 cut(s) 219
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 1 cut(s) 825
BfmI CTRYAG 2 cut(s) 753, 765
BfuAI ACCTGC 2 cut(s) 746, 993
BglI GCCNNNNNGGC 1 cut(s) 802
BisI GCNGC 2 cut(s) 213, 768
BlsI GCNGC 2 cut(s) 214, 769
Bme1390I CCNGG 2 cut(s) 219, 861
BmeT110I CYCGRG 2 cut(s) 553, 797
BmiI GGNNCC 4 cut(s) 127, 433, 489, 592
BmrFI CCNGG 2 cut(s) 219, 861
BmrI ACTGGG 1 cut(s) 1162
BmsI GCATC 2 cut(s) 160, 238
BmuI ACTGGG 1 cut(s) 1162
BpiI GAAGAC 2 cut(s) 245, 516
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 861
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 612, 798
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 109, 1157
Bse3DI GCAATG 2 cut(s) 565, 1101
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 612, 798
BseGI GGATG 2 cut(s) 88, 622
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 565, 1101
BseMII CTCAG 3 cut(s) 468, 1070, 1101
BseNI ACTGG 2 cut(s) 109, 1157
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 2 cut(s) 199, 779
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 2 cut(s) 553, 797
BsiSI CCGG 1 cut(s) 861
BslFI GGGAC 2 cut(s) 161, 1040
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 836
BsmFI GGGAC 2 cut(s) 161, 1040
BsmI GAATGC 2 cut(s) 406, 980
BsoBI CYCGRG 2 cut(s) 553, 797
Bsp1286I GDGCHC 2 cut(s) 278, 798
Bsp143I GATC 1 cut(s) 914
BspCNI CTCAG 3 cut(s) 467, 1071, 1102
BspLI GGNNCC 4 cut(s) 127, 433, 489, 592
BspMAI CTGCAG 2 cut(s) 757, 769
BspMI ACCTGC 2 cut(s) 746, 993
BspPI GGATC 1 cut(s) 922
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 565, 1101
BsrI ACTGG 2 cut(s) 109, 1157
BssECI CCNNGG 2 cut(s) 612, 798
BssMI GATC 1 cut(s) 914
BssSI CACGAG 1 cut(s) 895
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 5 cut(s) 121, 587, 813, 962, 1088
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 99, 204, 902
BstDEI CTNAG 3 cut(s) 454, 1079, 1110
BstF5I GGATG 2 cut(s) 88, 622
BstHHI GCGC 1 cut(s) 1002
BstKTI GATC 1 cut(s) 917
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 1 cut(s) 914
BstMWI GCNNNNNNNGC 2 cut(s) 212, 802
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 217, 859
BstSFI CTRYAG 2 cut(s) 753, 765
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 199, 779
BstV2I GAAGAC 2 cut(s) 245, 516
BtsCI GGATG 2 cut(s) 88, 622
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 4 cut(s) 126, 276, 592, 750
BveI ACCTGC 2 cut(s) 746, 993
Cac8I GCNNGC 3 cut(s) 99, 204, 902
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 1 cut(s) 1002
CseI GACGC 1 cut(s) 1037
Csp6I GTAC 5 cut(s) 70, 222, 233, 504, 963
CviAII CATG 5 cut(s) 33, 74, 643, 703, 850
CviQI GTAC 5 cut(s) 70, 222, 233, 504, 963
DdeI CTNAG 3 cut(s) 454, 1079, 1110
DpnI GATC 1 cut(s) 916
DpnII GATC 1 cut(s) 914
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 888
Eco88I CYCGRG 2 cut(s) 553, 797
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 612
EcoT22I ATGCAT 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 5 cut(s) 36, 77, 646, 706, 853
FaqI GGGAC 2 cut(s) 161, 1040
FatI CATG 5 cut(s) 32, 73, 642, 702, 849
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 2 cut(s) 213, 768
FokI GGATG 2 cut(s) 95, 629
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 213, 768
FspBI CTAG 1 cut(s) 825
GlaI GCGC 1 cut(s) 1001
GluI GCNGC 2 cut(s) 213, 768
GsuI CTGGAG 1 cut(s) 290
HapII CCGG 1 cut(s) 861
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 1 cut(s) 1002
Hin1II CATG 5 cut(s) 36, 77, 646, 706, 853
Hin6I GCGC 1 cut(s) 1000
HinP1I GCGC 1 cut(s) 1000
HinfI GANTC 7 cut(s) 300, 320, 392, 551, 708, 836, 1145
HpaII CCGG 1 cut(s) 861
HphI GGTGA 4 cut(s) 127, 305, 950, 998
Hpy166II GTNNAC 2 cut(s) 304, 958
Hpy188I TCNGA 6 cut(s) 375, 457, 538, 697, 841, 1150
Hpy188III TCNNGA 4 cut(s) 52, 410, 722, 1041
Hpy8I GTNNAC 2 cut(s) 304, 958
HpyCH4III ACNGT 5 cut(s) 121, 587, 813, 962, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 802
HpyF3I CTNAG 3 cut(s) 454, 1079, 1110
Hsp92II CATG 5 cut(s) 36, 77, 646, 706, 853
HspAI GCGC 1 cut(s) 1000
Kzo9I GATC 1 cut(s) 914
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 5 cut(s) 220, 431, 487, 590, 931
Lsp1109I GCAGC 2 cut(s) 199, 779
LweI GCATC 2 cut(s) 160, 238
MaeI CTAG 1 cut(s) 825
MaeIII GTNAC 3 cut(s) 115, 473, 886
MalI GATC 1 cut(s) 916
MboI GATC 1 cut(s) 914
MboII GAAGA 8 cut(s) 74, 250, 330, 516, 556, 581, 881, 1069
MhlI GDGCHC 2 cut(s) 278, 798
MlyI GAGTC 3 cut(s) 309, 545, 702
Mph1103I ATGCAT 1 cut(s) 855
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 7 cut(s) 135, 161, 327, 443, 602, 633, 996
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 2 cut(s) 219, 861
Mva1269I GAATGC 2 cut(s) 406, 980
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 212, 802
NciI CCSGG 1 cut(s) 861
NdeII GATC 1 cut(s) 914
NlaIII CATG 5 cut(s) 36, 77, 646, 706, 853
NlaIV GGNNCC 4 cut(s) 127, 433, 489, 592
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 855
NspI RCATGY 1 cut(s) 706
PaeR7I CTCGAG 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 864
PctI GAATGC 2 cut(s) 406, 980
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 4 cut(s) 320, 392, 836, 1145
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 859
PkrI GCNGC 2 cut(s) 214, 769
PleI GAGTC 3 cut(s) 308, 545, 702
PpsI GAGTC 3 cut(s) 308, 545, 702
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 4 cut(s) 127, 433, 489, 592
PspXI VCTCGAGB 1 cut(s) 553
PstI CTGCAG 2 cut(s) 757, 769
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 5 cut(s) 71, 223, 234, 505, 964
RsaNI GTAC 5 cut(s) 70, 222, 233, 504, 963
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 7 cut(s) 135, 161, 327, 443, 602, 633, 996
SatI GCNGC 2 cut(s) 213, 768
Sau3AI GATC 1 cut(s) 914
SchI GAGTC 3 cut(s) 309, 545, 702
ScrFI CCNGG 2 cut(s) 219, 861
SduI GDGCHC 2 cut(s) 278, 798
SfaNI GCATC 2 cut(s) 160, 238
SfcI CTRYAG 2 cut(s) 753, 765
Sfr274I CTCGAG 1 cut(s) 553
SlaI CTCGAG 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SspMI CTAG 1 cut(s) 825
StyD4I CCNGG 2 cut(s) 217, 859
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 5 cut(s) 121, 587, 813, 962, 1088
TaqI TCGA 2 cut(s) 516, 554
TatI WGTACW 2 cut(s) 503, 962
TfiI GAWTC 4 cut(s) 320, 392, 836, 1145
Tru1I TTAA 7 cut(s) 135, 161, 327, 443, 602, 633, 996
Tru9I TTAA 7 cut(s) 135, 161, 327, 443, 602, 633, 996
TscAI CASTG 4 cut(s) 126, 283, 592, 757
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 212, 767
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 8 cut(s) 99, 413, 582, 631, 849, 1089, 1149, 1158
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 4 cut(s) 126, 283, 592, 757
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 4 cut(s) 530, 690, 1120, 1136
XceI RCATGY 1 cut(s) 706
XhoI CTCGAG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.