Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009665

Physical Location & Seq

Genomic Coordinates Reverse (-)

6985777 .. 6989248

Gene Structure 3472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTACCATGATGTGGATGAACTAGTGAAGCAGGCTGAAAGCCAGTTGGTGACAGTGGGTGCCAATGTTAAAAACTTTTTTGCAGAGTTAGACTTAATAGGAGATGCAGTCCCTCAATCTTCGGTGGATAAAAAGCCAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCAGTATAAAGTCACTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCACATAGGTTCTGTGGAATCTGTTAAGAGCGTTTCTTCTGGTTTATCATTGGAACAAGTTAGTGATAATCAGACACCTGACAAGAAAGATTCAATCAATGCTAATCAAGAAATTGGATTGGATATTGGAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGAGAGTGTAACTCTTTCACGGAGGCAGAGGACAGAAGTACAAACCTTGTCGATATGTCTTCAAAATTTTCAGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGAAATTGGATTGGACAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATTGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTCAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAAGCACTGCAGGTAATACTGCAGCTAATTTGCCCATATTTGCAACAGAGCCCGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAGAGACAACCATGCATTTTCCCGGAACTGAGCCAGACAATGATGTTACCGGCTCGGGCTTGCAAACTTTGGGATCATTGAACAAGGTGGAGCTTGGTGAAAGTTGCATTGTAGTAGACTGTACTGAACTTGAATGCAGTTCTGGTGAAGCTGTTAAGCGCAGGTCTTACAAGAAAAAATTGAGGGACGCATTTGTTTCAAGAATGAGACTGTTGAAGAAGCAGAATAATGATGAACTGAGGAACAGTTTTGCAACACTCACACTCCCTGAGAAATCAAATTCGCCTGATTATGAATTTTTTGAATCCGACTGGGAAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

41.82

Weight (kDa)

4.34

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07930 FvH4_3g07930 FvH4_3g07930 FvH4_3g07930
malus_domestica	MD10G1281200.v1.1
pyrus_communis	pycom10g23480
rosa_chinensis	RchiOBHm_Chr5g0010561
rosa_laevigata	RLG00000031762
rosa_multiflora	Rmu_co8115700.1_g000001 Rmu_sc0001429.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065770
rosa_rugosa	Rorug04G0451000 Rorug04G0451100 Rorug04G0451200 Rorug04G0451200 Rorug04G0451200
rosa_samantha	Rh5AG082700 Rh5BG077900 Rh5CG090500 Rh5DG077900
rosa_wichuraiana	Rw0G000710 Rw0G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	743, 987
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	951
AclWI	GGATC	1 cut(s)	916
AcsI	RAATTY	4 cut(s)	527, 687, 1114, 1130
AfaI	GTAC	5 cut(s)	71, 220, 231, 502, 958
AfiI	CCNNNNNNNGG	1 cut(s)	79
AhlI	ACTAGT	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	202, 214
AluBI	AGCT	3 cut(s)	767, 928, 986
AluI	AGCT	3 cut(s)	767, 928, 986
Alw26I	GTCTC	2 cut(s)	833, 1036
AlwI	GGATC	1 cut(s)	916
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	3 cut(s)	550, 794, 889
ApeKI	GCWGC	2 cut(s)	209, 764
ApoI	RAATTY	4 cut(s)	527, 687, 1114, 1130
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	996
AsuC2I	CCSGG	1 cut(s)	858
AsuHPI	GGTGA	4 cut(s)	127, 302, 944, 992
AvaI	CYCGRG	3 cut(s)	550, 794, 889
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	2 cut(s)	242, 513
BbvI	GCAGC	2 cut(s)	196, 776
BccI	CCATC	2 cut(s)	272, 287
BciT130I	CCWGG	2 cut(s)	204, 216
BcnI	CCSGG	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	833, 1036
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	2 cut(s)	89, 822
BfmI	CTRYAG	2 cut(s)	750, 762
BfuAI	ACCTGC	2 cut(s)	743, 987
BglI	GCCNNNNNGGC	1 cut(s)	799
BisI	GCNGC	2 cut(s)	210, 765
BlsI	GCNGC	2 cut(s)	211, 766
Bme1390I	CCNGG	3 cut(s)	204, 216, 858
BmeT110I	CYCGRG	3 cut(s)	550, 794, 889
BmiI	GGNNCC	3 cut(s)	127, 430, 589
BmrFI	CCNGG	3 cut(s)	204, 216, 858
BmrI	ACTGGG	1 cut(s)	1156
BmsI	GCATC	2 cut(s)	160, 235
BmuI	ACTGGG	1 cut(s)	1156
BpiI	GAAGAC	2 cut(s)	242, 513
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	858
BsaJI	CCNNGG	3 cut(s)	203, 609, 795
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	3 cut(s)	109, 270, 1151
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	204, 216
BseDI	CCNNGG	3 cut(s)	203, 609, 795
BseGI	GGATG	2 cut(s)	88, 619
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	4 cut(s)	465, 855, 1064, 1095
BseNI	ACTGG	3 cut(s)	109, 270, 1151
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	196, 776
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	3 cut(s)	550, 794, 889
BsiSI	CCGG	2 cut(s)	858, 885
BslFI	GGGAC	2 cut(s)	161, 1034
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	833, 1036
BsmFI	GGGAC	2 cut(s)	161, 1034
BsmI	GAATGC	1 cut(s)	974
BsoBI	CYCGRG	3 cut(s)	550, 794, 889
Bsp1286I	GDGCHC	2 cut(s)	275, 795
Bsp143I	GATC	1 cut(s)	908
BspCNI	CTCAG	4 cut(s)	464, 856, 1065, 1096
BspLI	GGNNCC	3 cut(s)	127, 430, 589
BspMAI	CTGCAG	2 cut(s)	754, 766
BspMI	ACCTGC	2 cut(s)	743, 987
BspPI	GGATC	1 cut(s)	916
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	3 cut(s)	109, 270, 1151
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	3 cut(s)	203, 609, 795
BssMI	GATC	1 cut(s)	908
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	204, 216
Bst4CI	ACNGT	6 cut(s)	121, 584, 810, 956, 1047, 1082
BstC8I	GCNNGC	2 cut(s)	99, 896
BstDEI	CTNAG	4 cut(s)	451, 864, 1073, 1104
BstF5I	GGATG	2 cut(s)	88, 619
BstHHI	GCGC	1 cut(s)	996
BstKTI	GATC	1 cut(s)	911
BstMAI	GTCTC	2 cut(s)	833, 1036
BstMBI	GATC	1 cut(s)	908
BstMWI	GCNNNNNNNGC	1 cut(s)	799
BstNI	CCWGG	2 cut(s)	204, 216
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	202, 214, 856
BstSFI	CTRYAG	2 cut(s)	750, 762
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	196, 776
BstV2I	GAAGAC	2 cut(s)	242, 513
BtsCI	GGATG	2 cut(s)	88, 619
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	5 cut(s)	126, 263, 273, 589, 747
BveI	ACCTGC	2 cut(s)	743, 987
Cac8I	GCNNGC	2 cut(s)	99, 896
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	996
Cfr10I	RCCGGY	1 cut(s)	884
CseI	GACGC	1 cut(s)	1031
Csp6I	GTAC	5 cut(s)	70, 219, 230, 501, 957
CviAII	CATG	5 cut(s)	33, 74, 640, 700, 847
CviQI	GTAC	5 cut(s)	70, 219, 230, 501, 957
DdeI	CTNAG	4 cut(s)	451, 864, 1073, 1104
DpnI	GATC	1 cut(s)	910
DpnII	GATC	1 cut(s)	908
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	795
Eco88I	CYCGRG	3 cut(s)	550, 794, 889
EcoRII	CCWGG	2 cut(s)	202, 214
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	5 cut(s)	36, 77, 643, 703, 850
FaqI	GGGAC	2 cut(s)	161, 1034
FatI	CATG	5 cut(s)	32, 73, 639, 699, 846
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	2 cut(s)	210, 765
FokI	GGATG	2 cut(s)	95, 626
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	210, 765
FspBI	CTAG	2 cut(s)	89, 822
GlaI	GCGC	1 cut(s)	995
GluI	GCNGC	2 cut(s)	210, 765
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	2 cut(s)	858, 885
HgaI	GACGC	1 cut(s)	1031
HhaI	GCGC	1 cut(s)	996
Hin1II	CATG	5 cut(s)	36, 77, 643, 703, 850
Hin6I	GCGC	1 cut(s)	994
HinP1I	GCGC	1 cut(s)	994
HinfI	GANTC	7 cut(s)	297, 317, 389, 548, 705, 833, 1139
HpaII	CCGG	2 cut(s)	858, 885
HphI	GGTGA	4 cut(s)	127, 302, 944, 992
Hpy166II	GTNNAC	2 cut(s)	301, 952
Hpy188I	TCNGA	6 cut(s)	372, 454, 535, 694, 838, 1144
Hpy188III	TCNNGA	4 cut(s)	52, 407, 719, 1035
Hpy8I	GTNNAC	2 cut(s)	301, 952
HpyCH4III	ACNGT	6 cut(s)	121, 584, 810, 956, 1047, 1082
HpyF10VI	GCNNNNNNNGC	1 cut(s)	799
HpyF3I	CTNAG	4 cut(s)	451, 864, 1073, 1104
Hsp92II	CATG	5 cut(s)	36, 77, 643, 703, 850
HspAI	GCGC	1 cut(s)	994
Kzo9I	GATC	1 cut(s)	908
LmnI	GCTCC	4 cut(s)	217, 428, 587, 925
Lsp1109I	GCAGC	2 cut(s)	196, 776
LweI	GCATC	2 cut(s)	160, 235
MaeI	CTAG	2 cut(s)	89, 822
MaeIII	GTNAC	4 cut(s)	115, 261, 470, 880
MalI	GATC	1 cut(s)	910
MboI	GATC	1 cut(s)	908
MboII	GAAGA	8 cut(s)	74, 177, 247, 327, 513, 553, 578, 1063
MhlI	GDGCHC	2 cut(s)	275, 795
MlyI	GAGTC	3 cut(s)	306, 542, 699
Mph1103I	ATGCAT	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	7 cut(s)	135, 161, 324, 440, 599, 630, 990
MspI	CCGG	2 cut(s)	858, 885
MspR9I	CCNGG	3 cut(s)	204, 216, 858
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	204, 216
MwoI	GCNNNNNNNGC	1 cut(s)	799
NciI	CCSGG	1 cut(s)	858
NdeII	GATC	1 cut(s)	908
NlaIII	CATG	5 cut(s)	36, 77, 643, 703, 850
NlaIV	GGNNCC	3 cut(s)	127, 430, 589
NmuCI	GTSAC	2 cut(s)	115, 261
NsiI	ATGCAT	1 cut(s)	852
NspI	RCATGY	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	550
PctI	GAATGC	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	4 cut(s)	317, 389, 833, 1139
PflMI	CCANNNNNTGG	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	211, 766
PleI	GAGTC	3 cut(s)	305, 542, 699
PpsI	GAGTC	3 cut(s)	305, 542, 699
Psp6I	CCWGG	2 cut(s)	202, 214
PspGI	CCWGG	2 cut(s)	202, 214
PspN4I	GGNNCC	3 cut(s)	127, 430, 589
PspXI	VCTCGAGB	1 cut(s)	550
PstI	CTGCAG	2 cut(s)	754, 766
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	5 cut(s)	71, 220, 231, 502, 958
RsaNI	GTAC	5 cut(s)	70, 219, 230, 501, 957
SaqAI	TTAA	7 cut(s)	135, 161, 324, 440, 599, 630, 990
SatI	GCNGC	2 cut(s)	210, 765
Sau3AI	GATC	1 cut(s)	908
SchI	GAGTC	3 cut(s)	306, 542, 699
ScrFI	CCNGG	3 cut(s)	204, 216, 858
SduI	GDGCHC	2 cut(s)	275, 795
SfaNI	GCATC	2 cut(s)	160, 235
SfcI	CTRYAG	2 cut(s)	750, 762
Sfr274I	CTCGAG	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SpeI	ACTAGT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	89, 822
StyD4I	CCNGG	3 cut(s)	202, 214, 856
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	6 cut(s)	121, 584, 810, 956, 1047, 1082
TaqI	TCGA	2 cut(s)	513, 551
TatI	WGTACW	2 cut(s)	500, 956
TfiI	GAWTC	4 cut(s)	317, 389, 833, 1139
Tru1I	TTAA	7 cut(s)	135, 161, 324, 440, 599, 630, 990
Tru9I	TTAA	7 cut(s)	135, 161, 324, 440, 599, 630, 990
TscAI	CASTG	5 cut(s)	126, 270, 280, 589, 754
TseFI	GTSAC	2 cut(s)	115, 261
TseI	GCWGC	2 cut(s)	209, 764
Tsp45I	GTSAC	2 cut(s)	115, 261
TspDTI	ATGAA	6 cut(s)	99, 579, 628, 846, 1083, 1143
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	5 cut(s)	126, 270, 280, 589, 754
Van91I	CCANNNNNTGG	1 cut(s)	79
XapI	RAATTY	4 cut(s)	527, 687, 1114, 1130
XceI	RCATGY	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	89, 822
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.