Rh5AG082700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009665
Physical Location & Seq
Reverse (-)
7115106 .. 7118795
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG082700.1

Sequence Viewer

Length: 1041 bp
ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTACCATGATGTGGATGAACTAGTGAAGCAGGCTGAAAGCCAGTTGGTGACAGTGGGTGCCAATGTTAAAAACTTTTTCGCAGAGTTAGACTTAATAGGAGATGCAGTCTCTCAATCTTCGGTGGATAAAAAGAAAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCGGTATAAAGTCGCTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCGCATAGGTTCTGTGGAATCTGTTAAGAGCGTTTATTCTGGTTTATCATTGGAACAAGTTGGTGATAATCGGACACCTGACAAGAAAGATTCAATCAATGCTAATCAAGAAATTGGATTGGATATTGAAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGTGAGTGTAACTCTTTCACGGAGCCAGAGGACAGAAGTACAAAACTTGTCAATATGTCTTCAAAATTTTCAGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGTAATTGGATTGGACAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATAGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTCAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAGGCACTGCAGGTAATACTGCAGCTAATTTGCCCATATTTGCAACAGAGCTCGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAGAGACAGCCATGCATTTTCCGGGAACTGAAGAGGCAGACAATGATGTTACCGACTCGGGCTTGCAAACTTTGGGATCATTGAACAAGGTGGAGCTTGGTGAAAGTTGCATTGTAGTAGACTGTACTGAACTTGAATGCAGTTCTGGTGAAGCTATTAAGCGCAGGTCTTACAAGGTTAGTGTGAGAAAACTAAATAGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

37.11

Weight (kDa)

4.35

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 743, 990
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 79
AccI GTMKAC 1 cut(s) 954
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 919
AcsI RAATTY 2 cut(s) 527, 687
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 5 cut(s) 71, 220, 231, 502, 961
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 9 cut(s) 62, 393, 428, 525, 684, 722, 806, 919, 971
AhlI ACTAGT 1 cut(s) 88
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 5 cut(s) 767, 793, 931, 989, 1035
AluI AGCT 5 cut(s) 767, 793, 931, 989, 1035
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 2 cut(s) 181, 833
AlwI GGATC 1 cut(s) 919
Ama87I CYCGRG 3 cut(s) 550, 794, 892
ApeKI GCWGC 3 cut(s) 209, 764, 1035
ApoI RAATTY 2 cut(s) 527, 687
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 999
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 6 cut(s) 127, 302, 374, 476, 947, 995
AvaI CYCGRG 3 cut(s) 550, 794, 892
BaeGI GKGCMC 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 2 cut(s) 242, 513
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 196, 776, 1022
BccI CCATC 2 cut(s) 272, 287
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 2 cut(s) 181, 833
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 3 cut(s) 89, 822, 1039
BfmI CTRYAG 2 cut(s) 750, 762
BfuAI ACCTGC 2 cut(s) 743, 990
BisI GCNGC 3 cut(s) 210, 765, 1036
BlsI GCNGC 3 cut(s) 211, 766, 1037
Bme1390I CCNGG 2 cut(s) 216, 858
BmeT110I CYCGRG 3 cut(s) 550, 794, 892
BmiI GGNNCC 3 cut(s) 127, 486, 589
BmrFI CCNGG 2 cut(s) 216, 858
BmsI GCATC 2 cut(s) 160, 235
BpiI GAAGAC 2 cut(s) 242, 513
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 2 cut(s) 88, 619
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 196, 776, 1022
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 795
BsiHKCI CYCGRG 3 cut(s) 550, 794, 892
BsiSI CCGG 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 181, 833
BsmI GAATGC 1 cut(s) 977
BsoBI CYCGRG 3 cut(s) 550, 794, 892
Bsp1286I GDGCHC 2 cut(s) 275, 795
Bsp143I GATC 1 cut(s) 911
BspACI CCGC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 127, 486, 589
BspMAI CTGCAG 2 cut(s) 754, 766
BspMI ACCTGC 2 cut(s) 743, 990
BspPI GGATC 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 1 cut(s) 911
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 4 cut(s) 121, 584, 810, 959
Bst6I CTCTTC 1 cut(s) 861
BstC8I GCNNGC 2 cut(s) 99, 899
BstDEI CTNAG 1 cut(s) 451
BstF5I GGATG 2 cut(s) 88, 619
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 1 cut(s) 914
BstMAI GTCTC 2 cut(s) 181, 833
BstMBI GATC 1 cut(s) 911
BstMWI GCNNNNNNNGC 1 cut(s) 799
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 214, 856
BstSFI CTRYAG 2 cut(s) 750, 762
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 196, 776, 1022
BstV2I GAAGAC 2 cut(s) 242, 513
BtsCI GGATG 2 cut(s) 88, 619
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 4 cut(s) 126, 273, 589, 747
BveI ACCTGC 2 cut(s) 743, 990
Cac8I GCNNGC 2 cut(s) 99, 899
CfoI GCGC 1 cut(s) 999
Csp6I GTAC 5 cut(s) 70, 219, 230, 501, 960
CviAII CATG 5 cut(s) 33, 74, 640, 700, 847
CviQI GTAC 5 cut(s) 70, 219, 230, 501, 960
DdeI CTNAG 1 cut(s) 451
DpnI GATC 1 cut(s) 913
DpnII GATC 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 885
Eco88I CYCGRG 3 cut(s) 550, 794, 892
EcoICRI GAGCTC 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 5 cut(s) 36, 77, 643, 703, 850
FatI CATG 5 cut(s) 32, 73, 639, 699, 846
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 3 cut(s) 210, 765, 1036
FokI GGATG 2 cut(s) 95, 626
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 210, 765, 1036
FspBI CTAG 3 cut(s) 89, 822, 1039
GlaI GCGC 1 cut(s) 998
GluI GCNGC 3 cut(s) 210, 765, 1036
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 1 cut(s) 857
HhaI GCGC 1 cut(s) 999
Hin1II CATG 5 cut(s) 36, 77, 643, 703, 850
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HinfI GANTC 7 cut(s) 297, 317, 389, 548, 705, 833, 890
HpaII CCGG 1 cut(s) 857
HphI GGTGA 6 cut(s) 127, 302, 374, 476, 947, 995
Hpy166II GTNNAC 1 cut(s) 955
Hpy188I TCNGA 5 cut(s) 372, 454, 535, 694, 838
Hpy188III TCNNGA 3 cut(s) 52, 407, 719
Hpy8I GTNNAC 1 cut(s) 955
HpyCH4III ACNGT 4 cut(s) 121, 584, 810, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 799
HpyF3I CTNAG 1 cut(s) 451
Hsp92II CATG 5 cut(s) 36, 77, 643, 703, 850
HspAI GCGC 1 cut(s) 997
Kzo9I GATC 1 cut(s) 911
LmnI GCTCC 4 cut(s) 217, 484, 587, 928
Lsp1109I GCAGC 3 cut(s) 196, 776, 1022
LweI GCATC 2 cut(s) 160, 235
MaeI CTAG 3 cut(s) 89, 822, 1039
MaeIII GTNAC 3 cut(s) 115, 470, 883
MalI GATC 1 cut(s) 913
MboI GATC 1 cut(s) 911
MboII GAAGA 6 cut(s) 74, 177, 247, 513, 553, 878
MhlI GDGCHC 2 cut(s) 275, 795
MluCI AATT 8 cut(s) 411, 434, 441, 527, 570, 600, 687, 769
MlyI GAGTC 4 cut(s) 306, 542, 699, 884
MnlI CCTC 8 cut(s) 262, 275, 460, 484, 617, 643, 790, 862
Mph1103I ATGCAT 1 cut(s) 852
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 2 cut(s) 216, 858
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 799
NciI CCSGG 1 cut(s) 858
NdeII GATC 1 cut(s) 911
NlaIII CATG 5 cut(s) 36, 77, 643, 703, 850
NlaIV GGNNCC 3 cut(s) 127, 486, 589
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 852
NspI RCATGY 1 cut(s) 703
PaeR7I CTCGAG 2 cut(s) 550, 794
PctI GAATGC 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 317, 389, 833
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 3 cut(s) 211, 766, 1037
PleI GAGTC 4 cut(s) 305, 542, 699, 884
PpsI GAGTC 4 cut(s) 305, 542, 699, 884
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 127, 486, 589
PspXI VCTCGAGB 2 cut(s) 550, 794
PstI CTGCAG 2 cut(s) 754, 766
RsaI GTAC 5 cut(s) 71, 220, 231, 502, 961
RsaNI GTAC 5 cut(s) 70, 219, 230, 501, 960
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
SatI GCNGC 3 cut(s) 210, 765, 1036
Sau3AI GATC 1 cut(s) 911
SchI GAGTC 4 cut(s) 306, 542, 699, 884
ScrFI CCNGG 2 cut(s) 216, 858
SduI GDGCHC 2 cut(s) 275, 795
SfaNI GCATC 2 cut(s) 160, 235
SfcI CTRYAG 2 cut(s) 750, 762
Sfr274I CTCGAG 2 cut(s) 550, 794
SlaI CTCGAG 2 cut(s) 550, 794
SmlI CTYRAG 2 cut(s) 550, 794
SmoI CTYRAG 2 cut(s) 550, 794
SpeI ACTAGT 1 cut(s) 88
Sse9I AATT 8 cut(s) 411, 434, 441, 527, 570, 600, 687, 769
SsiI CCGC 1 cut(s) 301
SspMI CTAG 3 cut(s) 89, 822, 1039
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 2 cut(s) 214, 856
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 121, 584, 810, 959
TaqI TCGA 2 cut(s) 551, 795
TasI AATT 8 cut(s) 411, 434, 441, 527, 570, 600, 687, 769
TatI WGTACW 2 cut(s) 500, 959
TfiI GAWTC 3 cut(s) 317, 389, 833
Tru1I TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
Tru9I TTAA 7 cut(s) 135, 161, 324, 440, 599, 630, 993
TscAI CASTG 4 cut(s) 126, 280, 589, 754
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 209, 764, 1035
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 4 cut(s) 99, 579, 628, 846
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 4 cut(s) 126, 280, 589, 754
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 2 cut(s) 527, 687
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 2 cut(s) 550, 794
XmiI GTMKAC 1 cut(s) 954
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 3 cut(s) 89, 822, 1039
Zsp2I ATGCAT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.