Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009665

Physical Location & Seq

Genomic Coordinates Forward (+)

25618482 .. 25620192

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATACGAGTTGTAAAGGCATATCATGGTTTGGGAACTTATACCAGAAGTTTGAAGATTTGTGCCGGGAGGCGGAGGAAATAATGCAGCAGGAAGTAATTGAACCTGCTATAAGCCAGTTGGAGACATTTAATGAGAATTTTGAAAACCTTCTCTCCCTGTCAGAACCTATAGGAGATGCACTCGGTCAATCTTCAGTGGATATAGAGGAAGGGGCAGCTTCCGATTCATCTCTTTCGCAAAACGCTAATGATGCAGCCTGTGTAAAATCACCGGCAGGCACTGATGAAGACTGCGATAAAAGGTCATTAGATGACGCGTACAGAGTCCACTTAAGCTCTGTGGAATTTGTAAAGAACGTTTCCTGTGGTTTATCGTTGGAAGAAACTGATGCCCTAGAAATATCAAGCCAAGAAATTGAATTGGATGGTGGAGGCAATATATTAATCCCAGCCTCGGATGATGCAGGAGGGAGTAACTCTCTTGTGGAAACAGAGGATAGAACTCGTAACCATGCTGACATGCCTTCTAATATTTCAGATGACATACAATTTTCCAATGCTGTTAACTCTGTAGAAGCTGGTAAAAGAAGCCCTGCGGGCATTGGATCTTGTCCTGCCACCGATGCCCTAGAAATATCCAGTTCCTGCTTGACCACGGATGTGACAGTTTCTCCTCCTGGTGGGATTGAACTGCACAAAAGTTTTGATGAATCAAAATCTGCCGCGCCTTGGCCAGTATGTGACAGTTTTGATGAATCAGGGTCTACCATGCCTTTTCCAGAAAGTGAAGAGCTGGATAATGACGTTACCAAGTCAGTCTTACAGACTTCACAATCATTGAATACGCTAAAGCTTGATAAAAGTTGCATTTTAGTAGATGGTAGCGGAATTCAATCCATTTCTTGTCAAGACGCAAAATGCAGGTCTTACAAGAAGAAACTGAAGGACGCATTTGCTTCGAGAATGAGATTATTGAAGACGCGCAACCATAAGCAGCCTGCAGATTGGTCCGGAGATCGACGCAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

37.16

Weight (kDa)

4.38

Isoelectric Point (pI)

73.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009665)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07930 FvH4_3g07930 FvH4_3g07930 FvH4_3g07930
malus_domestica	MD10G1281200.v1.1
pyrus_communis	pycom10g23480
rosa_chinensis	RchiOBHm_Chr5g0010561
rosa_laevigata	RLG00000031762
rosa_multiflora	Rmu_co8115700.1_g000001 Rmu_sc0001429.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065770
rosa_rugosa	Rorug04G0451000 Rorug04G0451100 Rorug04G0451200 Rorug04G0451200 Rorug04G0451200
rosa_samantha	Rh5AG082700 Rh5BG077900 Rh5CG090500 Rh5DG077900
rosa_wichuraiana	Rw0G000710 Rw0G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	115, 915
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	3 cut(s)	320, 728, 985
AccIII	TCCGGA	1 cut(s)	1013
AciI	CCGC	4 cut(s)	74, 599, 726, 888
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	1 cut(s)	734
AcsI	RAATTY	3 cut(s)	139, 347, 891
AcuI	CTGAAG	2 cut(s)	180, 965
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	73, 457, 683, 732
AflII	CTTAAG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	8 cut(s)	56, 104, 146, 422, 692, 844, 896, 979
AjnI	CCWGG	1 cut(s)	679
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	5 cut(s)	221, 339, 581, 796, 856
AluI	AGCT	5 cut(s)	221, 339, 581, 796, 856
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	616
AlwNI	CAGNNNCTG	2 cut(s)	284, 648
Aor13HI	TCCGGA	1 cut(s)	1013
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	4 cut(s)	88, 218, 257, 997
ApoI	RAATTY	3 cut(s)	139, 347, 891
ArsI	GACNNNNNNTTYG	3 cut(s)	911, 943, 1014
AseI	ATTAAT	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	730, 987
AspS9I	GGNCC	1 cut(s)	1011
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	1011
BalI	TGGCCA	1 cut(s)	736
BbsI	GAAGAC	2 cut(s)	297, 986
BbvI	GCAGC	4 cut(s)	100, 230, 269, 1009
BccI	CCATC	2 cut(s)	422, 875
BcgI	CGANNNNNNTGC	2 cut(s)	942, 976
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	398, 632
BfmI	CTRYAG	3 cut(s)	171, 573, 1002
BfrI	CTTAAG	1 cut(s)	334
BfuAI	ACCTGC	2 cut(s)	115, 915
BglI	GCCNNNNNGGC	1 cut(s)	600
BisI	GCNGC	5 cut(s)	89, 219, 258, 726, 998
BlsI	GCNGC	5 cut(s)	90, 220, 259, 727, 999
Bme1390I	CCNGG	2 cut(s)	68, 681
Bme18I	GGWCC	1 cut(s)	1011
BmgT120I	GGNCC	1 cut(s)	1011
BmrFI	CCNGG	2 cut(s)	68, 681
BmsI	GCATC	5 cut(s)	169, 244, 382, 454, 616
BpiI	GAAGAC	2 cut(s)	297, 986
BplI	GAGNNNNNCTC	4 cut(s)	168, 200, 466, 498
BpuMI	CCSGG	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	456, 657, 731
BsaWI	WCCGGW	1 cut(s)	1013
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 658, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 457, 683, 732
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	118, 642, 737
BseAI	TCCGGA	1 cut(s)	1013
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	456, 657, 731
BseGI	GGATG	3 cut(s)	433, 466, 667
BseLI	CCNNNNNNNGG	4 cut(s)	73, 457, 683, 732
BseNI	ACTGG	3 cut(s)	118, 642, 737
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	4 cut(s)	100, 230, 269, 1009
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	3 cut(s)	320, 728, 985
BshFI	GGCC	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	67, 275, 1014
BslI	CCNNNNNNNGG	4 cut(s)	73, 457, 683, 732
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	1013
Bsp143I	GATC	2 cut(s)	608, 1018
BspACI	CCGC	4 cut(s)	74, 599, 726, 888
BspANI	GGCC	1 cut(s)	736
BspEI	TCCGGA	1 cut(s)	1013
BspFNI	CGCG	3 cut(s)	320, 728, 985
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	2 cut(s)	115, 915
BspPI	GGATC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	786
BspTI	CTTAAG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	118, 642, 737
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	456, 657, 731
BssMI	GATC	2 cut(s)	608, 1018
BssT1I	CCWWGG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	670, 749
Bst6I	CTCTTC	1 cut(s)	786
BstAFI	CTTAAG	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	280, 601, 1002
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	433, 466, 667
BstFNI	CGCG	3 cut(s)	320, 728, 985
BstHHI	GCGC	2 cut(s)	730, 987
BstKTI	GATC	2 cut(s)	611, 1021
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	608, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	66, 679
BstSFI	CTRYAG	3 cut(s)	171, 573, 1002
BstUI	CGCG	3 cut(s)	320, 728, 985
BstV1I	GCAGC	4 cut(s)	100, 230, 269, 1009
BstV2I	GAAGAC	2 cut(s)	297, 986
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	433, 466, 667
BtsIMutI	CAGTG	2 cut(s)	204, 282
BveI	ACCTGC	2 cut(s)	115, 915
Cac8I	GCNNGC	3 cut(s)	280, 601, 1002
CaiI	CAGNNNCTG	2 cut(s)	284, 648
CfoI	GCGC	2 cut(s)	730, 987
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	1011
CseI	GACGC	4 cut(s)	326, 923, 959, 991
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	27, 515, 523, 772
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	2 cut(s)	610, 1020
DpnII	GATC	2 cut(s)	608, 1018
EaeI	YGGCCR	1 cut(s)	734
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	1011
Eco57I	CTGAAG	2 cut(s)	180, 965
EcoRI	GAATTC	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	4 cut(s)	30, 518, 526, 775
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FatI	CATG	4 cut(s)	26, 514, 522, 771
FauI	CCCGC	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	5 cut(s)	89, 219, 258, 726, 998
FokI	GGATG	3 cut(s)	440, 473, 674
Fsp4HI	GCNGC	5 cut(s)	89, 219, 258, 726, 998
FspBI	CTAG	2 cut(s)	398, 632
GlaI	GCGC	2 cut(s)	729, 986
GluI	GCNGC	5 cut(s)	89, 219, 258, 726, 998
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	3 cut(s)	67, 275, 1014
HgaI	GACGC	4 cut(s)	326, 923, 959, 991
HhaI	GCGC	2 cut(s)	730, 987
Hin1II	CATG	4 cut(s)	30, 518, 526, 775
Hin6I	GCGC	2 cut(s)	728, 985
HinP1I	GCGC	2 cut(s)	728, 985
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	227, 327, 713, 758
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	3 cut(s)	67, 275, 1014
HphI	GGTGA	1 cut(s)	264
Hpy166II	GTNNAC	3 cut(s)	331, 568, 768
Hpy188I	TCNGA	4 cut(s)	166, 226, 460, 541
Hpy188III	TCNNGA	4 cut(s)	782, 911, 963, 1014
Hpy8I	GTNNAC	3 cut(s)	331, 568, 768
Hpy99I	CGWCG	1 cut(s)	1026
HpyAV	CCTTC	4 cut(s)	161, 206, 537, 940
HpyCH4III	ACNGT	2 cut(s)	670, 749
HpyCH4IV	ACGT	2 cut(s)	360, 807
HpyCH4V	TGCA	8 cut(s)	88, 182, 257, 467, 697, 870, 924, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
HpySE526I	ACGT	2 cut(s)	360, 807
Hsp92II	CATG	4 cut(s)	30, 518, 526, 775
HspAI	GCGC	2 cut(s)	728, 985
Kpn2I	TCCGGA	1 cut(s)	1013
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	608, 1018
LguI	GCTCTTC	1 cut(s)	786
Lsp1109I	GCAGC	4 cut(s)	100, 230, 269, 1009
LweI	GCATC	5 cut(s)	169, 244, 382, 454, 616
MaeI	CTAG	2 cut(s)	398, 632
MaeII	ACGT	2 cut(s)	360, 807
MaeIII	GTNAC	5 cut(s)	476, 509, 664, 743, 808
MalI	GATC	2 cut(s)	610, 1020
MboI	GATC	2 cut(s)	608, 1018
MboII	GAAGA	7 cut(s)	68, 186, 302, 395, 803, 949, 991
MflI	RGATCY	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	736
MluCI	AATT	7 cut(s)	99, 139, 347, 417, 422, 551, 891
MluI	ACGCGT	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	736
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	102, 360
MnlI	CCTC	8 cut(s)	64, 70, 202, 428, 464, 466, 490, 687
Mox20I	TGGCCA	1 cut(s)	736
MroI	TCCGGA	1 cut(s)	1013
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	736
MseI	TTAA	4 cut(s)	132, 335, 446, 567
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	736
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	3 cut(s)	67, 275, 1014
MspR9I	CCNGG	2 cut(s)	68, 681
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	3 cut(s)	320, 728, 985
MwoI	GCNNNNNNNGC	3 cut(s)	254, 600, 626
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	608, 1018
NlaIII	CATG	4 cut(s)	30, 518, 526, 775
NmuCI	GTSAC	2 cut(s)	664, 743
NspI	RCATGY	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	662
PciSI	GCTCTTC	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	227, 713, 758
PkrI	GCNGC	5 cut(s)	90, 220, 259, 727, 999
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	1011
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	2 cut(s)	284, 648
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	4 cut(s)	132, 335, 446, 567
SatI	GCNGC	5 cut(s)	89, 219, 258, 726, 998
Sau3AI	GATC	2 cut(s)	608, 1018
Sau96I	GGNCC	1 cut(s)	1011
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	68, 681
SfaNI	GCATC	5 cut(s)	169, 244, 382, 454, 616
SfcI	CTRYAG	3 cut(s)	171, 573, 1002
SinI	GGWCC	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	7 cut(s)	99, 139, 347, 417, 422, 551, 891
SsiI	CCGC	4 cut(s)	74, 599, 726, 888
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	398, 632
StyD4I	CCNGG	2 cut(s)	66, 679
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	2 cut(s)	670, 749
TaiI	ACGT	2 cut(s)	363, 810
TaqI	TCGA	2 cut(s)	962, 1021
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	7 cut(s)	99, 139, 347, 417, 422, 551, 891
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	227, 713, 758
Tru1I	TTAA	4 cut(s)	132, 335, 446, 567
Tru9I	TTAA	4 cut(s)	132, 335, 446, 567
TscAI	CASTG	2 cut(s)	204, 289
TseFI	GTSAC	2 cut(s)	664, 743
TseI	GCWGC	4 cut(s)	88, 218, 257, 997
Tsp45I	GTSAC	2 cut(s)	664, 743
TspDTI	ATGAA	4 cut(s)	219, 303, 726, 771
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	204, 289
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	1011
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	3 cut(s)	139, 347, 891
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	398, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.