FvH4_3g08980

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012593
Physical Location & Seq
Reverse (-)
5248563 .. 5254206
5644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08980.t2

Sequence Viewer

Length: 1968 bp
ATGGCAAATTCTTCTTCAGGCCGTCTGGACTTCTGGGATGCTGAGAAGATGCTTGATCTTTATGTGCACGATTATATGGTGAAGAAGAACATGCACAAGACTGCTGCAATTTTCAGGAAGGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACAAAGGAGGGGTTCTTGAATGAATGGTGGACTGTGTTTTATGATATGTATTCGTTGAGGACGTCGGAATTGAAGCCTCAAGAGGCCAAGGCTGAGGCAGCACCGGTTCAGGAAAGGAGAGAGAATGAACAACAACAACAACAACAACAGCAACCTAAACATGCAAGAGTGCCGGAAGATTTACCAAGAGTGCCTGCTGCACCTTTACCAATTACCAAGCAGAAGAGGTCTCGAAGAACGCCTAGGACAAGGACTACTGACTACTTCAGTAAGTGGTTGGGGATACCAGGTGGAGATTTGAGTCGAAGATTACATCCGCTAAGTGTCAACAATCTGAATATCTCAAAGTCACTGGCAAGCACTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGATGCAGGACAACAGAAAATGGATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAGGTTGTTGGAATGCATAACTCCTTGCTCCCACCAACTGGAGCTCAGGATGCAGGTTCAAGTGGAGTTAAACCTGGACCGCAAACTGCAAGGCCTTCAAAAGTAGTAAGCTCAGCTTTGCAGGCTCCAAACCAGCAGAAACTGATTGAGACATCAAGAGAAGAACAACAGCCACCTTTGGGTGAGCAGAAGATGGCTTCCCCCTTGAGACAAACTACAGAAGCCCAGCAACAGCCTGATCAGCAGCAGCAGAGGCAGTCACTAGAGGATGGCAAAGAGAGGAGGACAGCATCAGGAGCTGGGGACAATCAATTGGAAAATGTGAATGCTAATGAAGATGTCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGGTGGTGGTACAAGCACCCCATTCAAGGCTTCAAAACTTCGTGGTGCAAATAAAAAGCGCGAAAAGGGCTTCAAATTTGAAGAGATTTGTTCTCTCCACTCCAGCATGGCTAAGGTTGTATGCTGCCATTTTTCATCAAACGGGACGCTGTTAGCTAGTGCAGGGCATGAAAAGAAGGTTCTGATTTGGAACATGGAATCTTTTGATGTTGTTAAAACTTCCGAAGAGCATGCTAATCTCATTACTGATGTACGGTTTAGACCAAATTCAACAATGTTTGCAACATCCTCATTTGATAAAAATGTGAAGATATGGGATGCTACCAGTCCAAGTGAATCAATATCCAAGCTTGAAGGGCACAGTGAGCAAGTAATGTCTGTGGATTTCCACCCAAGGAAACTCAATCTCCTTTCATCATGTGATAGTAACGATGAAATCCGACTGTGGAATGTTAACCAATCTACTTGCACTCACATGCTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGGTTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGCGTCAATATTTTTGATGTTGAGACTGCCACTCTCGACTTGTACTCAAAGGGATCCGGACATGCTGAAGATGTCCTCTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCTTCCGTTAGTGAAGACAGTGCACGGATTTGGTCTGCATCAAGTGGAAAATGCATACATGAACTCCACTCAAATGGCAACAAATTCCAGTCATGCACATTTCATCCTGGATATTCACTTCTCCTGATCATTGGTTGTAACCAGTCCCTTGAGTTGTGGAGTCCAAGTCAGAGCAAGAAAACTATGACTGTTCCAGCACACAAAGGGCTTGTTGCTGCACTGGCGGCATCCCCAAAGACTGATATGGTTGCCTCAGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

656

Amino Acids

72.84

Weight (kDa)

8.62

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 16 - 42 1.2e-07 LisH
Beta-prop_CAF1B_HIR1 PF24105 358 - 500 1.6e-07 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 362 - 448 7.8e-09 EIF3I
Beta-prop_TEP1_2nd PF25047 364 - 467 5.5e-08 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 365 - 568 4.1e-10 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 366 - 498 1.1e-08 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 366 - 502 2.1e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 366 - 507 6.3e-21 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 369 - 491 2.3e-14 WDR3 second beta-propeller domain
Beta-prop_EIPR1 PF23609 370 - 489 9.2e-07 EIPR1 beta-propeller
WD40_Prp19 PF24814 372 - 571 4.5e-23 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 373 - 507 1.6e-26 WDR5 beta-propeller domain
Beta-prop_EML PF23409 374 - 504 4.5e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 375 - 494 5.2e-15 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 376 - 584 4.1e-09 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 376 - 447 9.6e-11 THOC3 beta-propeller domain
WD40 PF00400 411 - 446 1e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 417 - 507 9e-16 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 421 - 601 1.7e-21 WDHD1 first WD40 domain
Beta-prop_Aladin PF25460 457 - 572 9.6e-07 Aladin seven-bladed propeller
WD40_CDC20-Fz PF24807 463 - 605 9.2e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 483 - 656 1.4e-20 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 486 - 655 9.6e-17 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 502 - 580 4e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 504 - 655 2.2e-24 WDR5 beta-propeller domain
Beta-prop_WDR19_1st PF23389 508 - 654 9.1e-06 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 514 - 596 3.2e-10 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 515 - 652 2.5e-08 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 516 - 656 1e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 547 - 656 1.6e-12 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 566 - 655 2.4e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 588 - 655 4e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 662
AccII CGCG 1 cut(s) 1077
AccIII TCCGGA 1 cut(s) 1622
AciI CCGC 3 cut(s) 476, 704, 1901
AclWI GGATC 2 cut(s) 1614, 1627
AcsI RAATTY 4 cut(s) 7, 1091, 1282, 1760
AcuI CTGAAG 3 cut(s) 409, 1542, 1653
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 3 cut(s) 1027, 1269, 1610
AfiI CCNNNNNNNGG 5 cut(s) 662, 803, 1042, 1535, 1945
AflII CTTAAG 1 cut(s) 1496
AgeI ACCGGT 1 cut(s) 262
AjnI CCWGG 3 cut(s) 445, 697, 1783
AluBI AGCT 8 cut(s) 125, 597, 668, 735, 740, 923, 1172, 1366
AluI AGCT 8 cut(s) 125, 597, 668, 735, 740, 923, 1172, 1366
Alw21I GWGCWC 3 cut(s) 69, 670, 1702
Alw26I GTCTC 4 cut(s) 393, 767, 826, 1583
Alw44I GTGCAC 2 cut(s) 65, 1698
AlwI GGATC 2 cut(s) 1614, 1627
AlwNI CAGNNNCTG 2 cut(s) 766, 923
Aor13HI TCCGGA 1 cut(s) 1622
AoxI GGCC 3 cut(s) 19, 243, 716
ApaLI GTGCAC 2 cut(s) 65, 1698
ApeKI GCWGC 9 cut(s) 104, 257, 356, 868, 871, 1140, 1550, 1553, 1892
ApoI RAATTY 4 cut(s) 7, 1091, 1282, 1760
AsiGI ACCGGT 1 cut(s) 262
AspA2I CCTAGG 1 cut(s) 401
AspLEI GCGC 1 cut(s) 1077
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 91, 818
AvaII GGWCC 1 cut(s) 701
AvrII CCTAGG 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 1930
BaeGI GKGCMC 3 cut(s) 69, 1377, 1702
BamHI GGATCC 1 cut(s) 1619
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 1698
Bbv12I GWGCWC 3 cut(s) 69, 670, 1702
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 9 cut(s) 91, 269, 343, 880, 883, 1127, 1537, 1540, 1879
BccI CCATC 2 cut(s) 811, 887
BceAI ACGGC 1 cut(s) 6
BcgI CGANNNNNNTGC 2 cut(s) 1229, 1263
BciT130I CCWGG 3 cut(s) 447, 699, 1785
BciVI GTATCC 2 cut(s) 435, 1651
BclI TGATCA 3 cut(s) 862, 1803, 1942
BcoDI GTCTC 4 cut(s) 393, 767, 826, 1583
BfaI CTAG 3 cut(s) 402, 887, 1173
BfmI CTRYAG 1 cut(s) 840
BfrI CTTAAG 1 cut(s) 1496
BfuAI ACCTGC 1 cut(s) 668
BfuI GTATCC 2 cut(s) 435, 1651
BlnI CCTAGG 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 736
Bme1390I CCNGG 3 cut(s) 447, 699, 1785
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 3 cut(s) 750, 1621, 1937
BmrFI CCNGG 3 cut(s) 447, 699, 1785
BmsI GCATC 9 cut(s) 28, 39, 544, 561, 664, 923, 1324, 1724, 1913
BpiI GAAGAC 1 cut(s) 1698
BpmI CTGGAG 2 cut(s) 684, 1102
Bpu10I CCTNAGC 3 cut(s) 252, 669, 1128
Bpu1102I GCTNAGC 1 cut(s) 736
BpuEI CTTGAG 4 cut(s) 222, 533, 850, 1847
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 246, 401, 1409, 1529
BsaWI WCCGGW 2 cut(s) 262, 1622
BsaXI ACNNNNNCTCC 6 cut(s) 1407, 1437, 1725, 1755, 1828, 1858
Bsc4I CCNNNNNNNGG 5 cut(s) 662, 803, 1042, 1535, 1945
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 6 cut(s) 516, 667, 1341, 1765, 1819, 1902
Bse21I CCTNAGG 1 cut(s) 1930
BseAI TCCGGA 1 cut(s) 1622
BseBI CCWGG 3 cut(s) 447, 699, 1785
BseDI CCNNGG 4 cut(s) 246, 401, 1409, 1529
BseGI GGATG 9 cut(s) 43, 472, 679, 898, 1012, 1301, 1339, 1780, 1904
BseLI CCNNNNNNNGG 5 cut(s) 662, 803, 1042, 1535, 1945
BseMII CTCAG 5 cut(s) 33, 243, 683, 750, 1944
BseNI ACTGG 6 cut(s) 516, 667, 1341, 1765, 1819, 1902
BseRI GAGGAG 2 cut(s) 536, 919
BseSI GKGCMC 3 cut(s) 69, 1377, 1702
BseXI GCAGC 9 cut(s) 91, 269, 343, 880, 883, 1127, 1537, 1540, 1879
BseYI CCCAGC 3 cut(s) 849, 923, 1653
BsgI GTGCAG 3 cut(s) 342, 1197, 1878
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 3 cut(s) 21, 245, 718
BshTI ACCGGT 1 cut(s) 262
BsiHKAI GWGCWC 3 cut(s) 69, 670, 1702
BsiSI CCGG 3 cut(s) 263, 332, 1623
BslFI GGGAC 4 cut(s) 941, 950, 1174, 1807
BslI CCNNNNNNNGG 5 cut(s) 662, 803, 1042, 1535, 1945
BsmAI GTCTC 4 cut(s) 393, 767, 826, 1583
BsmFI GGGAC 4 cut(s) 941, 950, 1174, 1807
BsmI GAATGC 2 cut(s) 642, 955
BsnI GGCC 3 cut(s) 21, 245, 718
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 4 cut(s) 69, 670, 1377, 1702
Bsp13I TCCGGA 1 cut(s) 1622
Bsp143I GATC 5 cut(s) 55, 862, 1619, 1803, 1942
Bsp1720I GCTNAGC 1 cut(s) 736
BspACI CCGC 3 cut(s) 476, 704, 1901
BspANI GGCC 3 cut(s) 21, 245, 718
BspCNI CTCAG 5 cut(s) 34, 244, 682, 749, 1943
BspEI TCCGGA 1 cut(s) 1622
BspFNI CGCG 1 cut(s) 1077
BspLI GGNNCC 3 cut(s) 750, 1621, 1937
BspMI ACCTGC 1 cut(s) 668
BspPI GGATC 2 cut(s) 1614, 1627
BspQI GCTCTTC 1 cut(s) 1236
BspTI CTTAAG 1 cut(s) 1496
BspTNI GGTCTC 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 6 cut(s) 516, 667, 1341, 1765, 1819, 1902
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 246, 401, 1409, 1529
BssMI GATC 5 cut(s) 55, 862, 1619, 1803, 1942
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 3 cut(s) 246, 401, 1409
Bst2UI CCWGG 3 cut(s) 447, 699, 1785
Bst4CI ACNGT 7 cut(s) 193, 1013, 1272, 1379, 1461, 1697, 1867
Bst6I CTCTTC 3 cut(s) 377, 1092, 1236
BstACI GRCGYC 1 cut(s) 221
BstAFI CTTAAG 1 cut(s) 1496
BstC8I GCNNGC 4 cut(s) 354, 517, 747, 1248
BstDEI CTNAG 8 cut(s) 42, 252, 479, 624, 669, 736, 1128, 1930
BstF5I GGATG 9 cut(s) 43, 472, 679, 898, 1012, 1301, 1339, 1780, 1904
BstFNI CGCG 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1077
BstKTI GATC 5 cut(s) 58, 865, 1622, 1806, 1945
BstMAI GTCTC 4 cut(s) 393, 767, 826, 1583
BstMBI GATC 5 cut(s) 55, 862, 1619, 1803, 1942
BstNI CCWGG 3 cut(s) 447, 699, 1785
BstNSI RCATGY 5 cut(s) 94, 323, 1250, 1495, 1631
BstSCI CCNGG 3 cut(s) 445, 697, 1783
BstSFI CTRYAG 1 cut(s) 840
BstSLI GKGCMC 3 cut(s) 69, 1377, 1702
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 9 cut(s) 91, 269, 343, 880, 883, 1127, 1537, 1540, 1879
BstV2I GAAGAC 1 cut(s) 1698
BstX2I RGATCY 1 cut(s) 1619
BstXI CCANNNNNNTGG 1 cut(s) 1751
BstYI RGATCY 1 cut(s) 1619
Bsu36I CCTNAGG 1 cut(s) 1930
BsuI GTATCC 2 cut(s) 435, 1651
BsuRI GGCC 3 cut(s) 21, 245, 718
BtsCI GGATG 9 cut(s) 43, 472, 679, 898, 1012, 1301, 1339, 1780, 1904
BtsIMutI CAGTG 5 cut(s) 509, 1018, 1384, 1702, 1895
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 4 cut(s) 354, 517, 747, 1248
CaiI CAGNNNCTG 2 cut(s) 766, 923
CfoI GCGC 1 cut(s) 1077
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 2 cut(s) 1171, 1558
CsiI ACCWGGT 1 cut(s) 445
Csp6I GTAC 3 cut(s) 1026, 1268, 1609
CspAI ACCGGT 1 cut(s) 262
CviQI GTAC 3 cut(s) 1026, 1268, 1609
DdeI CTNAG 8 cut(s) 42, 252, 479, 624, 669, 736, 1128, 1930
DpnI GATC 5 cut(s) 57, 864, 1621, 1805, 1944
DpnII GATC 5 cut(s) 55, 862, 1619, 1803, 1942
Eam1104I CTCTTC 3 cut(s) 377, 1092, 1236
EarI CTCTTC 3 cut(s) 377, 1092, 1236
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 3 cut(s) 246, 401, 1409
Eco147I AGGCCT 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 3 cut(s) 409, 1542, 1653
Eco81I CCTNAGG 1 cut(s) 1930
EcoICRI GAGCTC 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 445, 697, 1783
EcoT14I CCWWGG 3 cut(s) 246, 401, 1409
EcoT22I ATGCAT 2 cut(s) 642, 1733
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 3 cut(s) 246, 401, 1409
FalI AAGNNNNNCTT 2 cut(s) 724, 756
FaqI GGGAC 4 cut(s) 941, 950, 1174, 1807
FbaI TGATCA 3 cut(s) 862, 1803, 1942
FokI GGATG 9 cut(s) 50, 459, 686, 905, 1019, 1288, 1346, 1767, 1891
FriOI GRGCYC 1 cut(s) 670
FspBI CTAG 3 cut(s) 402, 887, 1173
GlaI GCGC 1 cut(s) 1076
GsaI CCCAGC 3 cut(s) 853, 927, 1657
GsuI CTGGAG 2 cut(s) 684, 1102
HaeIII GGCC 3 cut(s) 21, 245, 718
HapII CCGG 3 cut(s) 263, 332, 1623
HgaI GACGC 2 cut(s) 1171, 1558
HhaI GCGC 1 cut(s) 1077
Hin1I GRCGYC 1 cut(s) 221
Hin6I GCGC 1 cut(s) 1075
HinP1I GCGC 1 cut(s) 1075
HincII GTYRAC 2 cut(s) 487, 1471
HindII GTYRAC 2 cut(s) 487, 1471
HindIII AAGCTT 1 cut(s) 1364
HinfI GANTC 6 cut(s) 460, 986, 1214, 1352, 1521, 1837
HpaI GTTAAC 1 cut(s) 1471
HpaII CCGG 3 cut(s) 263, 332, 1623
HphI GGTGA 2 cut(s) 91, 818
Hpy166II GTNNAC 5 cut(s) 67, 189, 487, 1471, 1700
Hpy188I TCNGA 8 cut(s) 139, 226, 495, 1200, 1240, 1457, 1520, 1848
Hpy8I GTNNAC 5 cut(s) 67, 189, 487, 1471, 1700
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 4 cut(s) 112, 729, 1186, 1364
HpyCH4III ACNGT 7 cut(s) 193, 1013, 1272, 1379, 1461, 1697, 1867
HpyCH4IV ACGT 1 cut(s) 221
HpyF3I CTNAG 8 cut(s) 42, 252, 479, 624, 669, 736, 1128, 1930
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 221
HspAI GCGC 1 cut(s) 1075
Kpn2I TCCGGA 1 cut(s) 1622
Ksp22I TGATCA 3 cut(s) 862, 1803, 1942
KspAI GTTAAC 1 cut(s) 1471
Kzo9I GATC 5 cut(s) 55, 862, 1619, 1803, 1942
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 6 cut(s) 657, 665, 754, 920, 1502, 1935
Lsp1109I GCAGC 9 cut(s) 91, 269, 343, 880, 883, 1127, 1537, 1540, 1879
LweI GCATC 9 cut(s) 28, 39, 544, 561, 664, 923, 1324, 1724, 1913
MabI ACCWGGT 1 cut(s) 445
MaeI CTAG 3 cut(s) 402, 887, 1173
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 4 cut(s) 507, 882, 1442, 1814
MalI GATC 5 cut(s) 57, 864, 1621, 1805, 1944
MboI GATC 5 cut(s) 55, 862, 1619, 1803, 1942
MfeI CAATTG 1 cut(s) 935
MflI RGATCY 1 cut(s) 1619
MhlI GDGCHC 4 cut(s) 69, 670, 1377, 1702
MluCI AATT 9 cut(s) 7, 108, 227, 369, 935, 1091, 1282, 1647, 1760
MlyI GAGTC 3 cut(s) 469, 995, 1846
MmeI TCCRAC 3 cut(s) 204, 613, 1480
Mph1103I ATGCAT 2 cut(s) 642, 1733
MroI TCCGGA 1 cut(s) 1622
MseI TTAA 4 cut(s) 693, 1230, 1470, 1497
MslI CAYNNNNRTG 2 cut(s) 1490, 1749
MspCI CTTAAG 1 cut(s) 1496
MspI CCGG 3 cut(s) 263, 332, 1623
MspR9I CCNGG 3 cut(s) 447, 699, 1785
MunI CAATTG 1 cut(s) 935
Mva1269I GAATGC 2 cut(s) 642, 955
MvaI CCWGG 3 cut(s) 447, 699, 1785
MvnI CGCG 1 cut(s) 1077
NdeII GATC 5 cut(s) 55, 862, 1619, 1803, 1942
NlaIV GGNNCC 3 cut(s) 750, 1621, 1937
NmuCI GTSAC 2 cut(s) 507, 882
NsiI ATGCAT 2 cut(s) 642, 1733
NspI RCATGY 5 cut(s) 94, 323, 1250, 1495, 1631
PaeI GCATGC 1 cut(s) 1250
PceI AGGCCT 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 1236
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 2 cut(s) 642, 955
PfeI GAWTC 3 cut(s) 1214, 1352, 1521
PflMI CCANNNNNTGG 1 cut(s) 662
PfoI TCCNGGA 1 cut(s) 1783
PinAI ACCGGT 1 cut(s) 262
PleI GAGTC 3 cut(s) 468, 994, 1845
PpsI GAGTC 3 cut(s) 468, 994, 1845
Psp124BI GAGCTC 1 cut(s) 670
Psp6I CCWGG 3 cut(s) 445, 697, 1783
PspFI CCCAGC 3 cut(s) 849, 923, 1653
PspGI CCWGG 3 cut(s) 445, 697, 1783
PspN4I GGNNCC 3 cut(s) 750, 1621, 1937
PspPI GGNCC 1 cut(s) 701
PstNI CAGNNNCTG 2 cut(s) 766, 923
PsuI RGATCY 1 cut(s) 1619
RsaI GTAC 3 cut(s) 1027, 1269, 1610
RsaNI GTAC 3 cut(s) 1026, 1268, 1609
RseI CAYNNNNRTG 2 cut(s) 1490, 1749
SacI GAGCTC 1 cut(s) 670
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 4 cut(s) 693, 1230, 1470, 1497
Sau3AI GATC 5 cut(s) 55, 862, 1619, 1803, 1942
Sau96I GGNCC 1 cut(s) 701
SchI GAGTC 3 cut(s) 469, 995, 1846
ScrFI CCNGG 3 cut(s) 447, 699, 1785
SduI GDGCHC 4 cut(s) 69, 670, 1377, 1702
SexAI ACCWGGT 1 cut(s) 445
SfaNI GCATC 9 cut(s) 28, 39, 544, 561, 664, 923, 1324, 1724, 1913
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 2 cut(s) 1490, 1749
SmlI CTYRAG 5 cut(s) 237, 548, 829, 1496, 1826
SmoI CTYRAG 5 cut(s) 237, 548, 829, 1496, 1826
SphI GCATGC 1 cut(s) 1250
Sse9I AATT 9 cut(s) 7, 108, 227, 369, 935, 1091, 1282, 1647, 1760
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 3 cut(s) 476, 704, 1901
SspI AATATT 3 cut(s) 556, 1544, 1576
SspMI CTAG 3 cut(s) 402, 887, 1173
SstI GAGCTC 1 cut(s) 670
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 3 cut(s) 445, 697, 1783
StyI CCWWGG 3 cut(s) 246, 401, 1409
TaaI ACNGT 7 cut(s) 193, 1013, 1272, 1379, 1461, 1697, 1867
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 391, 463, 1602
TasI AATT 9 cut(s) 7, 108, 227, 369, 935, 1091, 1282, 1647, 1760
TatI WGTACW 1 cut(s) 1608
TauI GCSGC 1 cut(s) 1904
TfiI GAWTC 3 cut(s) 1214, 1352, 1521
Tru1I TTAA 4 cut(s) 693, 1230, 1470, 1497
Tru9I TTAA 4 cut(s) 693, 1230, 1470, 1497
TscAI CASTG 5 cut(s) 516, 1018, 1384, 1702, 1902
TseFI GTSAC 2 cut(s) 507, 882
TseI GCWGC 9 cut(s) 104, 257, 356, 868, 871, 1140, 1550, 1553, 1892
Tsp45I GTSAC 2 cut(s) 507, 882
TspDTI ATGAA 9 cut(s) 195, 300, 972, 1140, 1200, 1419, 1464, 1752, 1769
TspGWI ACGGA 2 cut(s) 1672, 1717
TspRI CASTG 5 cut(s) 516, 1018, 1384, 1702, 1902
Van91I CCANNNNNTGG 1 cut(s) 662
Vha464I CTTAAG 1 cut(s) 1496
VneI GTGCAC 2 cut(s) 65, 1698
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 4 cut(s) 7, 1091, 1282, 1760
XceI RCATGY 5 cut(s) 94, 323, 1250, 1495, 1631
XcmI CCANNNNNNNNNTGG 1 cut(s) 1532
XmaJI CCTAGG 1 cut(s) 401
XspI CTAG 3 cut(s) 402, 887, 1173
ZraI GACGTC 1 cut(s) 222
Zsp2I ATGCAT 2 cut(s) 642, 1733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.