Rh5BG064000

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012593
Physical Location & Seq
Forward (+)
5304983 .. 5310156
5174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG064000.1

Sequence Viewer

Length: 1710 bp
ATGGCCAATTCTTCGGGCCGTGTTGACTTCTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTATATGGTGAAGAAGAATATGCACTCCACTGCTGAAATTTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTATTCGTCTAGGACACAATTGAAGCATCAAGATCAGGCCGAGGTTGAAGCACCGGTTCAGGAGAGGAGAGAGAATGAGCTACAACGTAAACATCCAAGAGTGCCTGAAGATTTACCAAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAACGCCTAGGACCAGTAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGTCCCAATTTGCATCCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGCAAGTGCAGGACAACAGAAATGTCATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAGGTTTTTGGACTGCATAACTCCTTACTCCCACTAACTGGAGCTCAGGATGCAGGTATAAGCGGAGTTCAACCTGGACCACAAATTGGAAGGCCTTTAAAAGTAGTAAGCGCAGCTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACATCAACAGCAGAACATCAGCATCCACGTTTGAGTGATCAGATGGTGGGTCGCCTCTTGAGACAAATTGCAGAGCCCCAGCAACAACCTGATCAGCAGCAGTTACTAGAGGATGACAGAGAGAGGAGGACAGCATCAGGAGCAGGAGACAGTCATTTGGAAAATACGAGTGCTAATGAAGATGTCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGCTGGTGGTACAAGTACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGTAATTCTTTGCTTCAAGCACCATATCCGCCAAGTGAATCAATATCTAAGCTTGAAGGGCACAATGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACACGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCCTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGTTGTTACGAGTCCCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCACACAAGGGGCTAGTTGCTGCACTGGCGTCATCCCCAAAGACTGATATGGTTGCCTCAGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

569

Amino Acids

63.49

Weight (kDa)

7.33

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 364 - 419 1.2e-07 WDR5 beta-propeller domain
WD40_Prp19 PF24814 364 - 441 5.7e-06 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 364 - 512 3e-15 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 366 - 516 6.4e-13 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 367 - 444 4.9e-09 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 369 - 486 6.8e-06 Aladin seven-bladed propeller
Beta-prop_WDR3_1st PF25173 395 - 569 1.1e-18 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 413 - 492 2.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 416 - 568 1.7e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 417 - 568 6.4e-17 THOC3 beta-propeller domain
WD40_Prp19 PF24814 418 - 568 2.8e-14 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 427 - 565 6.7e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 459 - 569 2.4e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 644
AccB7I CCANNNNNTGG 2 cut(s) 638, 686
AciI CCGC 4 cut(s) 449, 663, 1082, 1464
AclWI GGATC 1 cut(s) 1366
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 105, 1502
AcuI CTGAAG 2 cut(s) 330, 1281
AcyI GRCGYC 1 cut(s) 1643
AfaI GTAC 2 cut(s) 997, 1003
AfiI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1274, 1687
AgeI ACCGGT 1 cut(s) 256
AjnI CCWGG 3 cut(s) 418, 673, 1525
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 122, 283, 573, 644, 716, 1105
AluI AGCT 6 cut(s) 122, 283, 573, 644, 716, 1105
Alw21I GWGCWC 3 cut(s) 646, 1226, 1441
Alw26I GTCTC 5 cut(s) 366, 743, 805, 891, 1322
Alw44I GTGCAC 2 cut(s) 1222, 1437
AlwI GGATC 1 cut(s) 1366
AoxI GGCC 4 cut(s) 3, 16, 240, 692
ApaLI GTGCAC 2 cut(s) 1222, 1437
ApeKI GCWGC 7 cut(s) 541, 713, 847, 986, 1289, 1292, 1634
ApoI RAATTY 2 cut(s) 105, 1502
AsiGI ACCGGT 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 4 cut(s) 16, 378, 434, 677
AsuHPI GGTGA 2 cut(s) 88, 1136
AsuII TTCGAA 1 cut(s) 1352
AvaII GGWCC 3 cut(s) 378, 434, 677
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 1672
BaeGI GKGCMC 3 cut(s) 1116, 1226, 1441
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 646, 828
BbsI GAAGAC 1 cut(s) 1437
Bbv12I GWGCWC 3 cut(s) 646, 1226, 1441
BbvI GCAGC 7 cut(s) 553, 725, 859, 973, 1276, 1279, 1621
BccI CCATC 1 cut(s) 787
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 3 cut(s) 420, 675, 1527
BciVI GTATCC 2 cut(s) 408, 1390
BclI TGATCA 4 cut(s) 787, 841, 1545, 1684
BcoDI GTCTC 5 cut(s) 366, 743, 805, 891, 1322
BfaI CTAG 4 cut(s) 213, 375, 857, 1628
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 2 cut(s) 408, 1390
BisI GCNGC 7 cut(s) 542, 714, 848, 987, 1290, 1293, 1635
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 7 cut(s) 543, 715, 849, 988, 1291, 1294, 1636
BmcAI AGTACT 1 cut(s) 1003
Bme1390I CCNGG 3 cut(s) 420, 675, 1527
Bme18I GGWCC 3 cut(s) 378, 434, 677
BmgT120I GGNCC 4 cut(s) 16, 378, 434, 677
BmiI GGNNCC 3 cut(s) 436, 726, 1679
BmrFI CCNGG 3 cut(s) 420, 675, 1527
BmsI GCATC 9 cut(s) 25, 36, 238, 454, 517, 640, 781, 893, 1466
BpiI GAAGAC 1 cut(s) 1437
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 1352
BpuEI CTTGAG 3 cut(s) 506, 829, 1589
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 1643
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1148
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 988, 1018, 1570, 1600
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1274, 1687
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 5 cut(s) 381, 492, 643, 1335, 1644
Bse21I CCTNAGG 1 cut(s) 1672
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 3 cut(s) 420, 675, 1527
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1148
BseGI GGATG 9 cut(s) 40, 295, 445, 655, 772, 868, 982, 1522, 1646
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1274, 1687
BseMII CTCAG 2 cut(s) 659, 1686
BseNI ACTGG 5 cut(s) 381, 492, 643, 1335, 1644
BseRI GAGGAG 3 cut(s) 283, 509, 889
BseSI GKGCMC 3 cut(s) 1116, 1226, 1441
BseXI GCAGC 7 cut(s) 553, 725, 859, 973, 1276, 1279, 1621
BseYI CCCAGC 2 cut(s) 828, 1392
BsgI GTGCAG 4 cut(s) 47, 318, 569, 1620
BshFI GGCC 4 cut(s) 5, 18, 242, 694
BshTI ACCGGT 1 cut(s) 256
BsiHKAI GWGCWC 3 cut(s) 646, 1226, 1441
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 3 cut(s) 420, 920, 1549
BslI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1274, 1687
BsmAI GTCTC 5 cut(s) 366, 743, 805, 891, 1322
BsmFI GGGAC 3 cut(s) 420, 920, 1549
BsnI GGCC 4 cut(s) 5, 18, 242, 694
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 1352
Bsp1286I GDGCHC 5 cut(s) 646, 828, 1116, 1226, 1441
Bsp143I GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
BspACI CCGC 4 cut(s) 449, 663, 1082, 1464
BspANI GGCC 4 cut(s) 5, 18, 242, 694
BspCNI CTCAG 2 cut(s) 658, 1685
BspLI GGNNCC 3 cut(s) 436, 726, 1679
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 1366
BspT104I TTCGAA 1 cut(s) 1352
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 5 cut(s) 381, 492, 643, 1335, 1644
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1148
BssMI GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
BssNI GRCGYC 1 cut(s) 1643
BssT1I CCWWGG 3 cut(s) 159, 374, 1148
Bst2UI CCWGG 3 cut(s) 420, 675, 1527
Bst4CI ACNGT 5 cut(s) 902, 983, 1200, 1436, 1609
BstACI GRCGYC 1 cut(s) 1643
BstAPI GCANNNNNTGC 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 1352
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 5 cut(s) 600, 645, 1101, 1218, 1672
BstF5I GGATG 9 cut(s) 40, 295, 445, 655, 772, 868, 982, 1522, 1646
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 8 cut(s) 55, 238, 466, 790, 844, 1361, 1548, 1687
BstMAI GTCTC 5 cut(s) 366, 743, 805, 891, 1322
BstMBI GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
BstMWI GCNNNNNNNGC 9 cut(s) 341, 547, 650, 722, 890, 1111, 1120, 1470, 1640
BstNI CCWGG 3 cut(s) 420, 675, 1527
BstNSI RCATGY 3 cut(s) 1127, 1234, 1370
BstSCI CCNGG 3 cut(s) 418, 673, 1525
BstSLI GKGCMC 3 cut(s) 1116, 1226, 1441
BstV1I GCAGC 7 cut(s) 553, 725, 859, 973, 1276, 1279, 1621
BstV2I GAAGAC 1 cut(s) 1437
BstX2I RGATCY 1 cut(s) 1358
BstXI CCANNNNNNTGG 1 cut(s) 1493
BstYI RGATCY 1 cut(s) 1358
Bsu36I CCTNAGG 1 cut(s) 1672
BsuI GTATCC 2 cut(s) 408, 1390
BsuRI GGCC 4 cut(s) 5, 18, 242, 694
BtsCI GGATG 9 cut(s) 40, 295, 445, 655, 772, 868, 982, 1522, 1646
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 5 cut(s) 96, 988, 1140, 1441, 1637
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 1 cut(s) 713
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 4 cut(s) 16, 378, 434, 677
CseI GACGC 2 cut(s) 1013, 1632
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 2 cut(s) 996, 1002
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 6 cut(s) 1124, 1173, 1231, 1367, 1512, 1682
CviQI GTAC 2 cut(s) 996, 1002
DdeI CTNAG 5 cut(s) 600, 645, 1101, 1218, 1672
DpnI GATC 8 cut(s) 54, 237, 465, 789, 843, 1360, 1547, 1686
DpnII GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
DraI TTTAAA 1 cut(s) 699
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 3 cut(s) 159, 374, 1148
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 646, 828
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 378, 434, 677
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 330, 1281
Eco81I CCTNAGG 1 cut(s) 1672
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 418, 673, 1525
EcoT14I CCWWGG 3 cut(s) 159, 374, 1148
EcoT22I ATGCAT 1 cut(s) 1475
EcoT38I GRGCYC 2 cut(s) 646, 828
ErhI CCWWGG 3 cut(s) 159, 374, 1148
FaeI CATG 6 cut(s) 1127, 1176, 1234, 1370, 1515, 1685
FalI AAGNNNNNCTT 4 cut(s) 700, 732, 1365, 1397
FaqI GGGAC 3 cut(s) 420, 920, 1549
FatI CATG 6 cut(s) 1123, 1172, 1230, 1366, 1511, 1681
FbaI TGATCA 4 cut(s) 787, 841, 1545, 1684
Fnu4HI GCNGC 7 cut(s) 542, 714, 848, 987, 1290, 1293, 1635
FokI GGATG 9 cut(s) 47, 282, 432, 662, 759, 875, 989, 1509, 1633
FriOI GRGCYC 2 cut(s) 646, 828
Fsp4HI GCNGC 7 cut(s) 542, 714, 848, 987, 1290, 1293, 1635
FspBI CTAG 4 cut(s) 213, 375, 857, 1628
GlaI GCGC 1 cut(s) 712
GluI GCNGC 7 cut(s) 542, 714, 848, 987, 1290, 1293, 1635
GsaI CCCAGC 2 cut(s) 832, 1396
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 4 cut(s) 5, 18, 242, 694
HapII CCGG 1 cut(s) 257
HgaI GACGC 2 cut(s) 1013, 1632
HhaI GCGC 1 cut(s) 713
Hin1I GRCGYC 1 cut(s) 1643
Hin1II CATG 6 cut(s) 1127, 1176, 1234, 1370, 1515, 1685
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HincII GTYRAC 3 cut(s) 25, 1210, 1452
HindII GTYRAC 3 cut(s) 25, 1210, 1452
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 5 cut(s) 956, 1091, 1260, 1562, 1579
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 88, 1136
Hpy166II GTNNAC 7 cut(s) 25, 186, 293, 1210, 1224, 1439, 1452
Hpy188I TCNGA 5 cut(s) 136, 468, 792, 1196, 1259
Hpy8I GTNNAC 7 cut(s) 25, 186, 293, 1210, 1224, 1439, 1452
Hpy99I CGWCG 2 cut(s) 369, 1029
HpyAV CCTTC 3 cut(s) 684, 1103, 1348
HpyCH4III ACNGT 5 cut(s) 902, 983, 1200, 1436, 1609
HpyCH4IV ACGT 2 cut(s) 289, 778
HpyF10VI GCNNNNNNNGC 9 cut(s) 341, 547, 650, 722, 890, 1111, 1120, 1470, 1640
HpyF3I CTNAG 5 cut(s) 600, 645, 1101, 1218, 1672
HpySE526I ACGT 2 cut(s) 289, 778
Hsp92I GRCGYC 1 cut(s) 1643
Hsp92II CATG 6 cut(s) 1127, 1176, 1234, 1370, 1515, 1685
HspAI GCGC 1 cut(s) 711
Ksp22I TGATCA 4 cut(s) 787, 841, 1545, 1684
Kzo9I GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
LmnI GCTCC 5 cut(s) 641, 730, 890, 1241, 1677
Lsp1109I GCAGC 7 cut(s) 553, 725, 859, 973, 1276, 1279, 1621
LweI GCATC 9 cut(s) 25, 36, 238, 454, 517, 640, 781, 893, 1466
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 4 cut(s) 213, 375, 857, 1628
MaeII ACGT 2 cut(s) 289, 778
MaeIII GTNAC 4 cut(s) 480, 852, 1181, 1556
MalI GATC 8 cut(s) 54, 237, 465, 789, 843, 1360, 1547, 1686
MboI GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
MboII GAAGA 7 cut(s) 3, 91, 94, 323, 941, 956, 1442
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1358
MhlI GDGCHC 5 cut(s) 646, 828, 1116, 1226, 1441
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 7, 105, 221, 439, 684, 816, 1057, 1386, 1502
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 965, 1571, 1588
MmeI TCCRAC 1 cut(s) 1219
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1475
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 173, 698, 1236
MslI CAYNNNNRTG 2 cut(s) 1229, 1491
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 420, 675, 1527
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 3 cut(s) 420, 675, 1527
MwoI GCNNNNNNNGC 9 cut(s) 341, 547, 650, 722, 890, 1111, 1120, 1470, 1640
NdeII GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
NlaIII CATG 6 cut(s) 1127, 1176, 1234, 1370, 1515, 1685
NlaIV GGNNCC 3 cut(s) 436, 726, 1679
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 1475
NspI RCATGY 3 cut(s) 1127, 1234, 1370
NspV TTCGAA 1 cut(s) 1352
PceI AGGCCT 1 cut(s) 694
PfeI GAWTC 2 cut(s) 1091, 1260
PflMI CCANNNNNTGG 2 cut(s) 638, 686
PfoI TCCNGGA 1 cut(s) 1525
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 7 cut(s) 543, 715, 849, 988, 1291, 1294, 1636
PleI GAGTC 3 cut(s) 964, 1570, 1587
PpsI GAGTC 3 cut(s) 964, 1570, 1587
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 418, 673, 1525
PspFI CCCAGC 2 cut(s) 828, 1392
PspGI CCWGG 3 cut(s) 418, 673, 1525
PspN4I GGNNCC 3 cut(s) 436, 726, 1679
PspPI GGNCC 4 cut(s) 16, 378, 434, 677
PsuI RGATCY 1 cut(s) 1358
RsaI GTAC 2 cut(s) 997, 1003
RsaNI GTAC 2 cut(s) 996, 1002
RseI CAYNNNNRTG 2 cut(s) 1229, 1491
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 3 cut(s) 173, 698, 1236
SatI GCNGC 7 cut(s) 542, 714, 848, 987, 1290, 1293, 1635
Sau3AI GATC 8 cut(s) 52, 235, 463, 787, 841, 1358, 1545, 1684
Sau96I GGNCC 4 cut(s) 16, 378, 434, 677
ScaI AGTACT 1 cut(s) 1003
SchI GAGTC 3 cut(s) 965, 1571, 1588
ScrFI CCNGG 3 cut(s) 420, 675, 1527
SduI GDGCHC 5 cut(s) 646, 828, 1116, 1226, 1441
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 9 cut(s) 25, 36, 238, 454, 517, 640, 781, 893, 1466
SfuI TTCGAA 1 cut(s) 1352
SinI GGWCC 3 cut(s) 378, 434, 677
SmiMI CAYNNNNRTG 2 cut(s) 1229, 1491
SmlI CTYRAG 3 cut(s) 521, 808, 1568
SmoI CTYRAG 3 cut(s) 521, 808, 1568
Sse9I AATT 9 cut(s) 7, 105, 221, 439, 684, 816, 1057, 1386, 1502
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 4 cut(s) 449, 663, 1082, 1464
SspI AATATT 2 cut(s) 529, 1283
SspMI CTAG 4 cut(s) 213, 375, 857, 1628
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 3 cut(s) 418, 673, 1525
StyI CCWWGG 3 cut(s) 159, 374, 1148
TaaI ACNGT 5 cut(s) 902, 983, 1200, 1436, 1609
TaiI ACGT 2 cut(s) 292, 781
TaqI TCGA 4 cut(s) 364, 1270, 1341, 1352
TasI AATT 9 cut(s) 7, 105, 221, 439, 684, 816, 1057, 1386, 1502
TatI WGTACW 1 cut(s) 1001
TfiI GAWTC 2 cut(s) 1091, 1260
Tru1I TTAA 3 cut(s) 173, 698, 1236
Tru9I TTAA 3 cut(s) 173, 698, 1236
TscAI CASTG 5 cut(s) 103, 988, 1140, 1441, 1644
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 7 cut(s) 541, 713, 847, 986, 1289, 1292, 1634
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 6 cut(s) 192, 942, 1158, 1203, 1494, 1511
TspGWI ACGGA 1 cut(s) 1456
TspRI CASTG 5 cut(s) 103, 988, 1140, 1441, 1644
Van91I CCANNNNNTGG 2 cut(s) 638, 686
VneI GTGCAC 2 cut(s) 1222, 1437
VpaK11BI GGWCC 3 cut(s) 378, 434, 677
XapI RAATTY 2 cut(s) 105, 1502
XceI RCATGY 3 cut(s) 1127, 1234, 1370
XcmI CCANNNNNNNNNTGG 1 cut(s) 1271
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 4 cut(s) 213, 375, 857, 1628
ZrmI AGTACT 1 cut(s) 1003
Zsp2I ATGCAT 1 cut(s) 1475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.