Rh5CG074400

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012593
Physical Location & Seq
Forward (+)
5572625 .. 5582442
9818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG074400.1

Sequence Viewer

Length: 1962 bp
ATGGCCAATTCTTCGGGCCGTGTTGACTTTTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTATATGGTGAAGAAGAATATGCACTCCACTGCTGAAATCTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTACTCGTCTAGGACACAATTGAAGCATCAAGATCAGGCCAAGGTTGAAGCACCAGTTCAGGAAAGGAGAGAGAATGAGCAGCAACGTAAACATCCAAGAGTGCCTGAAGATTTACCTAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAACGCCTAGGACCAGGAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGTCCCAATTTGCAACCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGCAGGTGCAGGACAACAGAAATGTCATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAGGTTTTTGGACTGCATAACTCCTTACTCCCACTAACTGGAGCTCAGGATGCAGGTATAAGCGGAGTTAAACCTGGACCACAAATTGGAAGGCCTTTAAAAGTAGTAAGCGCAGCTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACATCAACAACAGAACATCAGCGTCCACCTTTGAGTGATCAGATGGTGGGTCGCCTCTTGAGACAAATTGCAGAGCCCCAGCAACAACCTGATCAGCAGCAGTTACTAGAGGGTGACAGAGAGAGGAGGACAGAATCAGGAGCTGGGAGGACAGCATCAGGAGCTGGAGACAGTCATTTGGAAAATAGGAGTGCTAATGAAGATGCCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGGTGGTGGTACAAGCACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGCTTCAAGTTCGAAGAAATTTGTTCTCTCCATTCAAGCATGGCTAAGGTTATATGCTGCCATTTTTCATCAAATGGGACGTTGTTAGCAAGTGCAGGGCATGAAAAAAAGGTTCTGATTTGGAACATGGAAACTTTTGATGTTGTTAAAACTTTCGAAGAGCATTCTCATCTCATTACAGATGTACGGTTTAGACCAAATTCAACAACGTTTGCAACATCTTCGTTTGATAGAAATGTGAAGATATGGGATGCAGCCAGACCAAGTGAATCAATATCCAAGCTTGAAGGGCACACTGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACAAGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCCTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGCTGTTACGAGTCCCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCGCACAAGGGGCTAGTTGCTGCACTGGCGTCATCCCCAAAGACTGACATGGTTGCCTCTGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

653

Amino Acids

72.94

Weight (kDa)

8.53

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 356 - 497 2.7e-10 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 361 - 564 2.2e-13 MABP1/WDR62 second WD40 domain
EIF3I PF24805 361 - 443 4.7e-07 EIF3I
Beta-prop_THOC3 PF25174 362 - 442 2.6e-12 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 363 - 503 5.4e-22 WDR3 first beta-propeller domain
WDR55 PF24796 363 - 493 7.1e-09 WDR55
WD40_CDC20-Fz PF24807 365 - 495 1.2e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 366 - 487 8e-16 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 368 - 652 8.5e-14 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 369 - 501 1.1e-18 Prp19 WD40 domain
Beta-prop_Aladin PF25460 370 - 569 3e-09 Aladin seven-bladed propeller
Beta-prop_WDR36-Utp21_2nd PF25168 370 - 465 1.1e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 370 - 445 4.8e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 371 - 503 5.6e-29 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 372 - 493 2.1e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT122_1st PF23381 383 - 555 4e-06 IFT122 first beta-propeller
Beta-prop_TEP1_2nd PF25047 403 - 501 3.2e-06 TEP-1 second beta-propeller
WD40 PF00400 406 - 442 8.9e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 413 - 528 1.9e-17 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 417 - 594 3.7e-19 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 460 - 601 5.5e-11 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 477 - 652 5.2e-17 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 478 - 653 1.3e-18 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 499 - 576 4.1e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 500 - 652 4.2e-17 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 500 - 652 2.2e-21 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 511 - 649 8.6e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 543 - 653 2.9e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 2 cut(s) 535, 644
AccB7I CCANNNNNTGG 2 cut(s) 638, 686
AciI CCGC 3 cut(s) 449, 663, 1716
AclI AACGTT 1 cut(s) 1283
AclWI GGATC 1 cut(s) 1618
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 1092, 1273, 1754
AcuI CTGAAG 3 cut(s) 94, 330, 1533
AcyI GRCGYC 1 cut(s) 1895
AfaI GTAC 3 cut(s) 206, 1018, 1260
AfiI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1526, 1939
AjnI CCWGG 4 cut(s) 380, 418, 673, 1777
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 7 cut(s) 122, 573, 644, 716, 893, 914, 1357
AluI AGCT 7 cut(s) 122, 573, 644, 716, 893, 914, 1357
Alw21I GWGCWC 3 cut(s) 646, 1478, 1693
Alw26I GTCTC 5 cut(s) 366, 743, 805, 912, 1574
Alw44I GTGCAC 2 cut(s) 1474, 1689
AlwI GGATC 1 cut(s) 1618
AlwNI CAGNNNCTG 2 cut(s) 893, 914
AoxI GGCC 4 cut(s) 3, 16, 240, 692
ApaLI GTGCAC 2 cut(s) 1474, 1689
ApeKI GCWGC 9 cut(s) 283, 541, 713, 847, 1131, 1328, 1541, 1544, 1886
ApoI RAATTY 3 cut(s) 1092, 1273, 1754
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 2 cut(s) 713, 1870
AspS9I GGNCC 4 cut(s) 16, 378, 434, 677
AsuHPI GGTGA 3 cut(s) 88, 875, 1388
AsuII TTCGAA 3 cut(s) 1086, 1230, 1604
AvaII GGWCC 3 cut(s) 378, 434, 677
AvrII CCTAGG 1 cut(s) 374
BaeGI GKGCMC 3 cut(s) 1368, 1478, 1693
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 646, 828
BbsI GAAGAC 1 cut(s) 1689
Bbv12I GWGCWC 3 cut(s) 646, 1478, 1693
BbvI GCAGC 9 cut(s) 295, 553, 725, 859, 1118, 1340, 1528, 1531, 1873
BccI CCATC 1 cut(s) 787
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 1278, 1312
BciT130I CCWGG 4 cut(s) 382, 420, 675, 1779
BciVI GTATCC 2 cut(s) 408, 1642
BclI TGATCA 4 cut(s) 787, 841, 1797, 1936
BcoDI GTCTC 5 cut(s) 366, 743, 805, 912, 1574
BfaI CTAG 5 cut(s) 213, 321, 375, 857, 1880
BfuAI ACCTGC 2 cut(s) 535, 644
BfuI GTATCC 2 cut(s) 408, 1642
BisI GCNGC 9 cut(s) 284, 542, 714, 848, 1132, 1329, 1542, 1545, 1887
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 9 cut(s) 285, 543, 715, 849, 1133, 1330, 1543, 1546, 1888
Bme1390I CCNGG 4 cut(s) 382, 420, 675, 1779
Bme18I GGWCC 3 cut(s) 378, 434, 677
BmgT120I GGNCC 4 cut(s) 16, 378, 434, 677
BmiI GGNNCC 3 cut(s) 436, 726, 1931
BmrFI CCNGG 4 cut(s) 382, 420, 675, 1779
BmsI GCATC 9 cut(s) 25, 36, 238, 517, 640, 914, 943, 1315, 1718
BpiI GAAGAC 1 cut(s) 1689
BpmI CTGGAG 2 cut(s) 660, 936
Bpu10I CCTNAGC 2 cut(s) 645, 1119
Bpu14I TTCGAA 3 cut(s) 1086, 1230, 1604
BpuEI CTTGAG 3 cut(s) 506, 829, 1841
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 1895
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1400
BsaXI ACNNNNNCTCC 4 cut(s) 1009, 1039, 1822, 1852
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1526, 1939
Bse1I ACTGG 5 cut(s) 257, 492, 643, 1587, 1896
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 4 cut(s) 382, 420, 675, 1779
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1400
BseGI GGATG 7 cut(s) 40, 295, 655, 1003, 1330, 1774, 1898
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1526, 1939
BseMII CTCAG 2 cut(s) 659, 1362
BseNI ACTGG 5 cut(s) 257, 492, 643, 1587, 1896
BseRI GAGGAG 2 cut(s) 509, 889
BseSI GKGCMC 3 cut(s) 1368, 1478, 1693
BseXI GCAGC 9 cut(s) 295, 553, 725, 859, 1118, 1340, 1528, 1531, 1873
BseYI CCCAGC 3 cut(s) 828, 893, 1644
BsgI GTGCAG 5 cut(s) 47, 318, 569, 1188, 1872
BshFI GGCC 4 cut(s) 5, 18, 242, 694
BsiHKAI GWGCWC 3 cut(s) 646, 1478, 1693
BslFI GGGAC 3 cut(s) 420, 1165, 1801
BslI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1526, 1939
BsmAI GTCTC 5 cut(s) 366, 743, 805, 912, 1574
BsmFI GGGAC 3 cut(s) 420, 1165, 1801
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 4 cut(s) 5, 18, 242, 694
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 3 cut(s) 1086, 1230, 1604
Bsp1286I GDGCHC 5 cut(s) 646, 828, 1368, 1478, 1693
Bsp143I GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
BspACI CCGC 3 cut(s) 449, 663, 1716
BspANI GGCC 4 cut(s) 5, 18, 242, 694
BspCNI CTCAG 2 cut(s) 658, 1363
BspLI GGNNCC 3 cut(s) 436, 726, 1931
BspMI ACCTGC 2 cut(s) 535, 644
BspPI GGATC 1 cut(s) 1618
BspQI GCTCTTC 1 cut(s) 1227
BspT104I TTCGAA 3 cut(s) 1086, 1230, 1604
BspTNI GGTCTC 1 cut(s) 366
BsrI ACTGG 5 cut(s) 257, 492, 643, 1587, 1896
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1400
BssMI GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
BssNI GRCGYC 1 cut(s) 1895
BssT1I CCWWGG 4 cut(s) 159, 243, 374, 1400
Bst2UI CCWGG 4 cut(s) 382, 420, 675, 1779
Bst4CI ACNGT 6 cut(s) 923, 1004, 1263, 1452, 1688, 1861
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 1 cut(s) 1895
BstAPI GCANNNNNTGC 1 cut(s) 547
BstBI TTCGAA 3 cut(s) 1086, 1230, 1604
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 5 cut(s) 600, 645, 1119, 1371, 1470
BstF5I GGATG 7 cut(s) 40, 295, 655, 1003, 1330, 1774, 1898
BstHHI GCGC 2 cut(s) 713, 1870
BstKTI GATC 8 cut(s) 55, 238, 466, 790, 844, 1613, 1800, 1939
BstMAI GTCTC 5 cut(s) 366, 743, 805, 912, 1574
BstMBI GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
BstNI CCWGG 4 cut(s) 382, 420, 675, 1779
BstNSI RCATGY 3 cut(s) 1379, 1486, 1622
BstSCI CCNGG 4 cut(s) 380, 418, 673, 1777
BstSLI GKGCMC 3 cut(s) 1368, 1478, 1693
BstV1I GCAGC 9 cut(s) 295, 553, 725, 859, 1118, 1340, 1528, 1531, 1873
BstV2I GAAGAC 1 cut(s) 1689
BstX2I RGATCY 1 cut(s) 1610
BstXI CCANNNNNNTGG 1 cut(s) 1745
BstYI RGATCY 1 cut(s) 1610
BsuI GTATCC 2 cut(s) 408, 1642
BsuRI GGCC 4 cut(s) 5, 18, 242, 694
BtsCI GGATG 7 cut(s) 40, 295, 655, 1003, 1330, 1774, 1898
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 6 cut(s) 96, 1009, 1368, 1392, 1693, 1889
BveI ACCTGC 2 cut(s) 535, 644
Cac8I GCNNGC 1 cut(s) 723
CaiI CAGNNNCTG 2 cut(s) 893, 914
CfoI GCGC 2 cut(s) 713, 1870
Cfr13I GGNCC 4 cut(s) 16, 378, 434, 677
CseI GACGC 3 cut(s) 761, 1034, 1884
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 3 cut(s) 205, 1017, 1259
CviQI GTAC 3 cut(s) 205, 1017, 1259
DdeI CTNAG 5 cut(s) 600, 645, 1119, 1371, 1470
DpnI GATC 8 cut(s) 54, 237, 465, 789, 843, 1612, 1799, 1938
DpnII GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
DraI TTTAAA 1 cut(s) 699
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1227
EarI CTCTTC 1 cut(s) 1227
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 4 cut(s) 159, 243, 374, 1400
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 646, 828
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 378, 434, 677
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 3 cut(s) 94, 330, 1533
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 380, 418, 673, 1777
EcoT14I CCWWGG 4 cut(s) 159, 243, 374, 1400
EcoT22I ATGCAT 1 cut(s) 1727
EcoT38I GRGCYC 2 cut(s) 646, 828
ErhI CCWWGG 4 cut(s) 159, 243, 374, 1400
FalI AAGNNNNNCTT 4 cut(s) 700, 732, 1617, 1649
FaqI GGGAC 3 cut(s) 420, 1165, 1801
FbaI TGATCA 4 cut(s) 787, 841, 1797, 1936
Fnu4HI GCNGC 9 cut(s) 284, 542, 714, 848, 1132, 1329, 1542, 1545, 1887
FokI GGATG 7 cut(s) 47, 282, 662, 1010, 1337, 1761, 1885
FriOI GRGCYC 2 cut(s) 646, 828
Fsp4HI GCNGC 9 cut(s) 284, 542, 714, 848, 1132, 1329, 1542, 1545, 1887
FspBI CTAG 5 cut(s) 213, 321, 375, 857, 1880
GlaI GCGC 2 cut(s) 712, 1869
GluI GCNGC 9 cut(s) 284, 542, 714, 848, 1132, 1329, 1542, 1545, 1887
GsaI CCCAGC 3 cut(s) 832, 897, 1648
GsuI CTGGAG 2 cut(s) 660, 936
HaeIII GGCC 4 cut(s) 5, 18, 242, 694
HgaI GACGC 3 cut(s) 761, 1034, 1884
HhaI GCGC 2 cut(s) 713, 1870
Hin1I GRCGYC 1 cut(s) 1895
Hin6I GCGC 2 cut(s) 711, 1868
HinP1I GCGC 2 cut(s) 711, 1868
HincII GTYRAC 3 cut(s) 25, 1462, 1704
HindII GTYRAC 3 cut(s) 25, 1462, 1704
HindIII AAGCTT 1 cut(s) 1355
HinfI GANTC 6 cut(s) 884, 977, 1343, 1512, 1814, 1831
HphI GGTGA 3 cut(s) 88, 875, 1388
Hpy166II GTNNAC 9 cut(s) 25, 186, 205, 293, 776, 1462, 1476, 1691, 1704
Hpy188I TCNGA 6 cut(s) 136, 468, 792, 1191, 1448, 1511
Hpy8I GTNNAC 9 cut(s) 25, 186, 205, 293, 776, 1462, 1476, 1691, 1704
Hpy99I CGWCG 2 cut(s) 369, 1050
HpyAV CCTTC 3 cut(s) 684, 1355, 1600
HpyCH4III ACNGT 6 cut(s) 923, 1004, 1263, 1452, 1688, 1861
HpyCH4IV ACGT 3 cut(s) 289, 1154, 1283
HpyF3I CTNAG 5 cut(s) 600, 645, 1119, 1371, 1470
HpySE526I ACGT 3 cut(s) 289, 1154, 1283
Hsp92I GRCGYC 1 cut(s) 1895
HspAI GCGC 2 cut(s) 711, 1868
Ksp22I TGATCA 4 cut(s) 787, 841, 1797, 1936
Kzo9I GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 6 cut(s) 641, 730, 890, 911, 1493, 1929
Lsp1109I GCAGC 9 cut(s) 295, 553, 725, 859, 1118, 1340, 1528, 1531, 1873
LweI GCATC 9 cut(s) 25, 36, 238, 517, 640, 914, 943, 1315, 1718
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 5 cut(s) 213, 321, 375, 857, 1880
MaeII ACGT 3 cut(s) 289, 1154, 1283
MaeIII GTNAC 5 cut(s) 480, 852, 863, 1433, 1808
MalI GATC 8 cut(s) 54, 237, 465, 789, 843, 1612, 1799, 1938
MboI GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1610
MhlI GDGCHC 5 cut(s) 646, 828, 1368, 1478, 1693
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 7, 221, 439, 684, 816, 1092, 1273, 1638, 1754
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 986, 1823, 1840
MmeI TCCRAC 1 cut(s) 1471
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1727
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 173, 669, 698, 1221, 1488
MslI CAYNNNNRTG 2 cut(s) 1481, 1743
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 4 cut(s) 382, 420, 675, 1779
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 4 cut(s) 382, 420, 675, 1779
NdeII GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
NlaIV GGNNCC 3 cut(s) 436, 726, 1931
NmuCI GTSAC 2 cut(s) 480, 863
NsiI ATGCAT 1 cut(s) 1727
NspI RCATGY 3 cut(s) 1379, 1486, 1622
NspV TTCGAA 3 cut(s) 1086, 1230, 1604
PaqCI CACCTGC 1 cut(s) 535
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 1227
PctI GAATGC 1 cut(s) 1237
PfeI GAWTC 3 cut(s) 884, 1343, 1512
PflMI CCANNNNNTGG 2 cut(s) 638, 686
PfoI TCCNGGA 1 cut(s) 1777
PkrI GCNGC 9 cut(s) 285, 543, 715, 849, 1133, 1330, 1543, 1546, 1888
PleI GAGTC 3 cut(s) 985, 1822, 1839
PpsI GAGTC 3 cut(s) 985, 1822, 1839
Psp124BI GAGCTC 1 cut(s) 646
Psp1406I AACGTT 1 cut(s) 1283
Psp6I CCWGG 4 cut(s) 380, 418, 673, 1777
PspFI CCCAGC 3 cut(s) 828, 893, 1644
PspGI CCWGG 4 cut(s) 380, 418, 673, 1777
PspN4I GGNNCC 3 cut(s) 436, 726, 1931
PspPI GGNCC 4 cut(s) 16, 378, 434, 677
PstNI CAGNNNCTG 2 cut(s) 893, 914
PsuI RGATCY 1 cut(s) 1610
RsaI GTAC 3 cut(s) 206, 1018, 1260
RsaNI GTAC 3 cut(s) 205, 1017, 1259
RseI CAYNNNNRTG 2 cut(s) 1481, 1743
SacI GAGCTC 1 cut(s) 646
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 5 cut(s) 173, 669, 698, 1221, 1488
SatI GCNGC 9 cut(s) 284, 542, 714, 848, 1132, 1329, 1542, 1545, 1887
Sau3AI GATC 8 cut(s) 52, 235, 463, 787, 841, 1610, 1797, 1936
Sau96I GGNCC 4 cut(s) 16, 378, 434, 677
SchI GAGTC 3 cut(s) 986, 1823, 1840
ScrFI CCNGG 4 cut(s) 382, 420, 675, 1779
SduI GDGCHC 5 cut(s) 646, 828, 1368, 1478, 1693
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 9 cut(s) 25, 36, 238, 517, 640, 914, 943, 1315, 1718
SfuI TTCGAA 3 cut(s) 1086, 1230, 1604
SinI GGWCC 3 cut(s) 378, 434, 677
SmiMI CAYNNNNRTG 2 cut(s) 1481, 1743
SmlI CTYRAG 3 cut(s) 521, 808, 1820
SmoI CTYRAG 3 cut(s) 521, 808, 1820
Sse9I AATT 9 cut(s) 7, 221, 439, 684, 816, 1092, 1273, 1638, 1754
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 3 cut(s) 449, 663, 1716
SspI AATATT 2 cut(s) 529, 1535
SspMI CTAG 5 cut(s) 213, 321, 375, 857, 1880
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 4 cut(s) 380, 418, 673, 1777
StyI CCWWGG 4 cut(s) 159, 243, 374, 1400
TaaI ACNGT 6 cut(s) 923, 1004, 1263, 1452, 1688, 1861
TaiI ACGT 3 cut(s) 292, 1157, 1286
TaqI TCGA 6 cut(s) 364, 1086, 1230, 1522, 1593, 1604
TasI AATT 9 cut(s) 7, 221, 439, 684, 816, 1092, 1273, 1638, 1754
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 3 cut(s) 884, 1343, 1512
Tru1I TTAA 5 cut(s) 173, 669, 698, 1221, 1488
Tru9I TTAA 5 cut(s) 173, 669, 698, 1221, 1488
TscAI CASTG 6 cut(s) 103, 1009, 1375, 1392, 1693, 1896
TseFI GTSAC 2 cut(s) 480, 863
TseI GCWGC 9 cut(s) 283, 541, 713, 847, 1131, 1328, 1541, 1544, 1886
Tsp45I GTSAC 2 cut(s) 480, 863
TspDTI ATGAA 8 cut(s) 192, 963, 1131, 1191, 1410, 1455, 1746, 1763
TspGWI ACGGA 1 cut(s) 1708
TspRI CASTG 6 cut(s) 103, 1009, 1375, 1392, 1693, 1896
Van91I CCANNNNNTGG 2 cut(s) 638, 686
VneI GTGCAC 2 cut(s) 1474, 1689
VpaK11BI GGWCC 3 cut(s) 378, 434, 677
XapI RAATTY 3 cut(s) 1092, 1273, 1754
XceI RCATGY 3 cut(s) 1379, 1486, 1622
XcmI CCANNNNNNNNNTGG 1 cut(s) 1523
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 5 cut(s) 213, 321, 375, 857, 1880
Zsp2I ATGCAT 1 cut(s) 1727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.