Rroxscaffold_1G00067860

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012593
Physical Location & Seq
Reverse (-)
89143547 .. 89149347
5801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067860.1

Sequence Viewer

Length: 1938 bp
ATGGCCAATTCTTCGGGCCGTGTTGACTTCTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTACATGGTGAAGAAGAATATGCACTCCACTGCTGAAATTTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTATTCGTCTAGGACACAATTGAAGCATCAAGATCAGGCCAAGGTTGAAGCACCAGTTCAGGAAAGGAGAGAGAATGAGCAACAACGTAAACATCCAAGAGTGCCTGAAGATTTACCAAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAACGCCTAGGACCAGGAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGACCCAATTTGCATCCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGGTGCAGGACAACAGAAATGTCATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAAGTTTTTGGACCGCATAACTCCTTACTCCCACTAACCGGAGCTCAGGATGCAGGTATAAGCGGAGTTAAACCTGGACCAGAAATTGGAAGGCCTTTAAAAGTAGCAAGAGCAGTTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACATCAACAGCAGAACATCAGCATCCACCTTTGAGTAATCAGATGGTGGGTCGCCTCTTGAGACAAATTCCAGAGCCCCAGCAACAACCTGATCAGCAGCAGTTACTAGAGGATGACAGAGAGAGGAGGACAGCATCAGGAGCTGGAGACAGTCGTTTGGAAAATACGAGTGCTAATGAAGATGTCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGCAGGTGGTACAAGCACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGCTTCAAGTTCGAAGAAATTTGTTCTCTTCATTCAAGCATGGCTAAGGTTGTATGCTGCCATTTTTCATCAAATGGGACGTTGTTAGCTAGTGCAGGGCATGAAAAAAAGGTTCTGATTTGGAACATGGAAACTTTTGATGTTGTTAAAACTTTCGAAGAGCATTCTCATCTCATTACAGATGTACGGTTTAGACCGAATTCAACAACGTTTGCAACATCTTCGTTTGATAGAAATGTGAAAATATGGGATGCAGCCAGACCAAGTGAATCAATATCCAAGCTTGAAGGGCACACTGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACACGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCTTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGTTGTTACGAGTCCCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCGCACAAGGGGCTAGTTGCTGCACTGGCGTCATCCCCAAAGACTGATATGGTTGCCTCAGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

645

Amino Acids

72.31

Weight (kDa)

8.53

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 348 - 488 1.9e-10 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 353 - 436 3.3e-07 EIF3I
WD40_MABP1-WDR62_2nd PF24782 353 - 556 5e-14 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 355 - 434 1.4e-12 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 355 - 495 3.6e-22 WDR3 first beta-propeller domain
WDR55 PF24796 355 - 485 6.3e-09 WDR55
WD40_CDC20-Fz PF24807 357 - 485 2.1e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 358 - 479 9.3e-16 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 360 - 482 9.9e-10 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 361 - 494 4.1e-19 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 362 - 437 3.8e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 362 - 495 8.7e-30 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 364 - 483 2.9e-15 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 367 - 495 3.6e-08 G protein beta WD-40 repeat protein
Beta-prop_EML PF23409 367 - 491 3.8e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin PF25460 367 - 563 4e-09 Aladin seven-bladed propeller
Beta-prop_IFT122_1st PF23381 373 - 547 8.8e-06 IFT122 first beta-propeller
Beta-prop_TEP1_2nd PF25047 395 - 493 3.3e-06 TEP-1 second beta-propeller
WD40 PF00400 398 - 434 8.8e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 405 - 495 4.1e-16 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 409 - 586 3.4e-19 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 444 - 593 1.8e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 472 - 645 2.5e-18 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 473 - 644 1.8e-16 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 490 - 568 3.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 491 - 644 2e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 492 - 644 4.2e-17 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 503 - 641 8e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 535 - 645 2.9e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 532, 977
Acc36I ACCTGC 3 cut(s) 532, 641, 977
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 4 cut(s) 449, 611, 660, 1692
AclI AACGTT 1 cut(s) 1259
AclWI GGATC 1 cut(s) 1594
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 105, 813, 1068, 1249, 1730
AcuI CTGAAG 2 cut(s) 330, 1509
AcyI GRCGYC 1 cut(s) 1871
AfaI GTAC 2 cut(s) 994, 1236
AfiI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1502, 1915
AjnI CCWGG 4 cut(s) 380, 418, 670, 1753
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 122, 570, 641, 890, 1139, 1333
AluI AGCT 6 cut(s) 122, 570, 641, 890, 1139, 1333
Alw21I GWGCWC 3 cut(s) 643, 1454, 1669
Alw26I GTCTC 5 cut(s) 366, 740, 802, 888, 1550
Alw44I GTGCAC 2 cut(s) 1450, 1665
AlwI GGATC 1 cut(s) 1594
AlwNI CAGNNNCTG 1 cut(s) 890
AoxI GGCC 4 cut(s) 3, 16, 240, 689
ApaLI GTGCAC 2 cut(s) 1450, 1665
ApeKI GCWGC 7 cut(s) 844, 983, 1107, 1304, 1517, 1520, 1862
ApoI RAATTY 5 cut(s) 105, 813, 1068, 1249, 1730
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 1 cut(s) 1846
AspS9I GGNCC 5 cut(s) 16, 378, 434, 608, 674
AsuHPI GGTGA 2 cut(s) 88, 1364
AsuII TTCGAA 3 cut(s) 1062, 1206, 1580
AvaII GGWCC 4 cut(s) 378, 434, 608, 674
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 1900
BaeGI GKGCMC 3 cut(s) 1344, 1454, 1669
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 643, 825
BbsI GAAGAC 1 cut(s) 1665
Bbv12I GWGCWC 3 cut(s) 643, 1454, 1669
BbvI GCAGC 7 cut(s) 856, 970, 1094, 1316, 1504, 1507, 1849
BccI CCATC 1 cut(s) 784
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 1254, 1288
BciT130I CCWGG 4 cut(s) 382, 420, 672, 1755
BciVI GTATCC 2 cut(s) 408, 1618
BclI TGATCA 3 cut(s) 838, 1773, 1912
BcoDI GTCTC 5 cut(s) 366, 740, 802, 888, 1550
BfaI CTAG 5 cut(s) 213, 375, 854, 1140, 1856
BfmI CTRYAG 1 cut(s) 984
BfuAI ACCTGC 3 cut(s) 532, 641, 977
BfuI GTATCC 2 cut(s) 408, 1618
BisI GCNGC 7 cut(s) 845, 984, 1108, 1305, 1518, 1521, 1863
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 7 cut(s) 846, 985, 1109, 1306, 1519, 1522, 1864
Bme1390I CCNGG 4 cut(s) 382, 420, 672, 1755
Bme18I GGWCC 4 cut(s) 378, 434, 608, 674
BmgT120I GGNCC 5 cut(s) 16, 378, 434, 608, 674
BmiI GGNNCC 3 cut(s) 436, 723, 1907
BmrFI CCNGG 4 cut(s) 382, 420, 672, 1755
BpiI GAAGAC 1 cut(s) 1665
BpmI CTGGAG 1 cut(s) 912
Bpu10I CCTNAGC 2 cut(s) 642, 1095
Bpu14I TTCGAA 3 cut(s) 1062, 1206, 1580
BpuEI CTTGAG 3 cut(s) 506, 826, 1817
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 1871
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1376
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 4 cut(s) 985, 1015, 1798, 1828
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1502, 1915
Bse1I ACTGG 4 cut(s) 257, 492, 1563, 1872
Bse21I CCTNAGG 1 cut(s) 1900
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 4 cut(s) 382, 420, 672, 1755
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1376
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1502, 1915
BseMII CTCAG 3 cut(s) 656, 1338, 1914
BseNI ACTGG 4 cut(s) 257, 492, 1563, 1872
BseRI GAGGAG 2 cut(s) 509, 886
BseSI GKGCMC 3 cut(s) 1344, 1454, 1669
BseXI GCAGC 7 cut(s) 856, 970, 1094, 1316, 1504, 1507, 1849
BseYI CCCAGC 2 cut(s) 825, 1620
BsgI GTGCAG 5 cut(s) 47, 318, 566, 1164, 1848
BshFI GGCC 4 cut(s) 5, 18, 242, 691
BsiHKAI GWGCWC 3 cut(s) 643, 1454, 1669
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 3 cut(s) 917, 1141, 1777
BslI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1502, 1915
BsmAI GTCTC 5 cut(s) 366, 740, 802, 888, 1550
BsmFI GGGAC 3 cut(s) 917, 1141, 1777
BsmI GAATGC 1 cut(s) 1213
BsnI GGCC 4 cut(s) 5, 18, 242, 691
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 3 cut(s) 1062, 1206, 1580
Bsp1286I GDGCHC 5 cut(s) 643, 825, 1344, 1454, 1669
Bsp143I GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
BspACI CCGC 4 cut(s) 449, 611, 660, 1692
BspANI GGCC 4 cut(s) 5, 18, 242, 691
BspCNI CTCAG 3 cut(s) 655, 1339, 1913
BspLI GGNNCC 3 cut(s) 436, 723, 1907
BspMAI CTGCAG 1 cut(s) 988
BspMI ACCTGC 3 cut(s) 532, 641, 977
BspPI GGATC 1 cut(s) 1594
BspQI GCTCTTC 1 cut(s) 1203
BspT104I TTCGAA 3 cut(s) 1062, 1206, 1580
BspTNI GGTCTC 1 cut(s) 366
BsrI ACTGG 4 cut(s) 257, 492, 1563, 1872
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1376
BssMI GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
BssNI GRCGYC 1 cut(s) 1871
BssT1I CCWWGG 4 cut(s) 159, 243, 374, 1376
Bst2UI CCWGG 4 cut(s) 382, 420, 672, 1755
Bst4CI ACNGT 6 cut(s) 899, 980, 1239, 1428, 1664, 1837
Bst6I CTCTTC 2 cut(s) 1083, 1203
BstACI GRCGYC 1 cut(s) 1871
BstBI TTCGAA 3 cut(s) 1062, 1206, 1580
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 5 cut(s) 642, 1095, 1347, 1446, 1900
BstHHI GCGC 1 cut(s) 1846
BstKTI GATC 7 cut(s) 55, 238, 466, 841, 1589, 1776, 1915
BstMAI GTCTC 5 cut(s) 366, 740, 802, 888, 1550
BstMBI GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
BstMWI GCNNNNNNNGC 8 cut(s) 341, 647, 887, 1339, 1348, 1698, 1852, 1868
BstNI CCWGG 4 cut(s) 382, 420, 672, 1755
BstNSI RCATGY 3 cut(s) 1355, 1462, 1598
BstSCI CCNGG 4 cut(s) 380, 418, 670, 1753
BstSFI CTRYAG 1 cut(s) 984
BstSLI GKGCMC 3 cut(s) 1344, 1454, 1669
BstV1I GCAGC 7 cut(s) 856, 970, 1094, 1316, 1504, 1507, 1849
BstV2I GAAGAC 1 cut(s) 1665
BstX2I RGATCY 1 cut(s) 1586
BstXI CCANNNNNNTGG 1 cut(s) 1721
BstYI RGATCY 1 cut(s) 1586
Bsu36I CCTNAGG 1 cut(s) 1900
BsuI GTATCC 2 cut(s) 408, 1618
BsuRI GGCC 4 cut(s) 5, 18, 242, 691
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 6 cut(s) 96, 985, 1344, 1368, 1669, 1865
BveI ACCTGC 3 cut(s) 532, 641, 977
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 1 cut(s) 890
CfoI GCGC 1 cut(s) 1846
Cfr13I GGNCC 5 cut(s) 16, 378, 434, 608, 674
CseI GACGC 2 cut(s) 1010, 1860
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 2 cut(s) 993, 1235
CviQI GTAC 2 cut(s) 993, 1235
DdeI CTNAG 5 cut(s) 642, 1095, 1347, 1446, 1900
DpnI GATC 7 cut(s) 54, 237, 465, 840, 1588, 1775, 1914
DpnII GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
DraI TTTAAA 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1083, 1203
EarI CTCTTC 2 cut(s) 1083, 1203
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 4 cut(s) 159, 243, 374, 1376
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 643, 825
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 4 cut(s) 378, 434, 608, 674
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 330, 1509
Eco81I CCTNAGG 1 cut(s) 1900
EcoICRI GAGCTC 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 1249
EcoRII CCWGG 4 cut(s) 380, 418, 670, 1753
EcoT14I CCWWGG 4 cut(s) 159, 243, 374, 1376
EcoT22I ATGCAT 1 cut(s) 1703
EcoT38I GRGCYC 2 cut(s) 643, 825
ErhI CCWWGG 4 cut(s) 159, 243, 374, 1376
FalI AAGNNNNNCTT 2 cut(s) 1593, 1625
FaqI GGGAC 3 cut(s) 917, 1141, 1777
FbaI TGATCA 3 cut(s) 838, 1773, 1912
Fnu4HI GCNGC 7 cut(s) 845, 984, 1108, 1305, 1518, 1521, 1863
FriOI GRGCYC 2 cut(s) 643, 825
Fsp4HI GCNGC 7 cut(s) 845, 984, 1108, 1305, 1518, 1521, 1863
FspBI CTAG 5 cut(s) 213, 375, 854, 1140, 1856
GlaI GCGC 1 cut(s) 1845
GluI GCNGC 7 cut(s) 845, 984, 1108, 1305, 1518, 1521, 1863
GsaI CCCAGC 2 cut(s) 829, 1624
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 4 cut(s) 5, 18, 242, 691
HapII CCGG 1 cut(s) 636
HgaI GACGC 2 cut(s) 1010, 1860
HhaI GCGC 1 cut(s) 1846
Hin1I GRCGYC 1 cut(s) 1871
Hin6I GCGC 1 cut(s) 1844
HinP1I GCGC 1 cut(s) 1844
HincII GTYRAC 3 cut(s) 25, 1438, 1680
HindII GTYRAC 3 cut(s) 25, 1438, 1680
HindIII AAGCTT 1 cut(s) 1331
HinfI GANTC 5 cut(s) 953, 1319, 1488, 1790, 1807
HpaII CCGG 1 cut(s) 636
HphI GGTGA 2 cut(s) 88, 1364
Hpy166II GTNNAC 7 cut(s) 25, 186, 293, 1438, 1452, 1667, 1680
Hpy188I TCNGA 6 cut(s) 136, 468, 789, 1167, 1424, 1487
Hpy8I GTNNAC 7 cut(s) 25, 186, 293, 1438, 1452, 1667, 1680
Hpy99I CGWCG 2 cut(s) 369, 1026
HpyAV CCTTC 3 cut(s) 681, 1331, 1576
HpyCH4III ACNGT 6 cut(s) 899, 980, 1239, 1428, 1664, 1837
HpyCH4IV ACGT 3 cut(s) 289, 1130, 1259
HpyF10VI GCNNNNNNNGC 8 cut(s) 341, 647, 887, 1339, 1348, 1698, 1852, 1868
HpyF3I CTNAG 5 cut(s) 642, 1095, 1347, 1446, 1900
HpySE526I ACGT 3 cut(s) 289, 1130, 1259
Hsp92I GRCGYC 1 cut(s) 1871
HspAI GCGC 1 cut(s) 1844
Ksp22I TGATCA 3 cut(s) 838, 1773, 1912
Kzo9I GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 5 cut(s) 638, 727, 887, 1469, 1905
Lsp1109I GCAGC 7 cut(s) 856, 970, 1094, 1316, 1504, 1507, 1849
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 5 cut(s) 213, 375, 854, 1140, 1856
MaeII ACGT 3 cut(s) 289, 1130, 1259
MaeIII GTNAC 4 cut(s) 480, 849, 1409, 1784
MalI GATC 7 cut(s) 54, 237, 465, 840, 1588, 1775, 1914
MboI GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1586
MhlI GDGCHC 5 cut(s) 643, 825, 1344, 1454, 1669
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 962, 1799, 1816
MmeI TCCRAC 1 cut(s) 1447
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1703
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 173, 666, 695, 1197, 1464
MslI CAYNNNNRTG 2 cut(s) 1457, 1719
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 4 cut(s) 382, 420, 672, 1755
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 1213
MvaI CCWGG 4 cut(s) 382, 420, 672, 1755
MwoI GCNNNNNNNGC 8 cut(s) 341, 647, 887, 1339, 1348, 1698, 1852, 1868
NdeII GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
NlaIV GGNNCC 3 cut(s) 436, 723, 1907
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 1703
NspI RCATGY 3 cut(s) 1355, 1462, 1598
NspV TTCGAA 3 cut(s) 1062, 1206, 1580
PaqCI CACCTGC 2 cut(s) 532, 977
PceI AGGCCT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 1203
PctI GAATGC 1 cut(s) 1213
PfeI GAWTC 2 cut(s) 1319, 1488
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 1 cut(s) 1753
PkrI GCNGC 7 cut(s) 846, 985, 1109, 1306, 1519, 1522, 1864
PleI GAGTC 3 cut(s) 961, 1798, 1815
PpsI GAGTC 3 cut(s) 961, 1798, 1815
Psp124BI GAGCTC 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 1259
Psp6I CCWGG 4 cut(s) 380, 418, 670, 1753
PspFI CCCAGC 2 cut(s) 825, 1620
PspGI CCWGG 4 cut(s) 380, 418, 670, 1753
PspN4I GGNNCC 3 cut(s) 436, 723, 1907
PspPI GGNCC 5 cut(s) 16, 378, 434, 608, 674
PstI CTGCAG 1 cut(s) 988
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 1 cut(s) 1586
RsaI GTAC 2 cut(s) 994, 1236
RsaNI GTAC 2 cut(s) 993, 1235
RseI CAYNNNNRTG 2 cut(s) 1457, 1719
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 5 cut(s) 173, 666, 695, 1197, 1464
SatI GCNGC 7 cut(s) 845, 984, 1108, 1305, 1518, 1521, 1863
Sau3AI GATC 7 cut(s) 52, 235, 463, 838, 1586, 1773, 1912
Sau96I GGNCC 5 cut(s) 16, 378, 434, 608, 674
SchI GAGTC 3 cut(s) 962, 1799, 1816
ScrFI CCNGG 4 cut(s) 382, 420, 672, 1755
SduI GDGCHC 5 cut(s) 643, 825, 1344, 1454, 1669
SexAI ACCWGGT 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 984
SfuI TTCGAA 3 cut(s) 1062, 1206, 1580
SinI GGWCC 4 cut(s) 378, 434, 608, 674
SmiMI CAYNNNNRTG 2 cut(s) 1457, 1719
SmlI CTYRAG 3 cut(s) 521, 805, 1796
SmoI CTYRAG 3 cut(s) 521, 805, 1796
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 4 cut(s) 449, 611, 660, 1692
SspI AATATT 2 cut(s) 529, 1511
SspMI CTAG 5 cut(s) 213, 375, 854, 1140, 1856
SstI GAGCTC 1 cut(s) 643
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 4 cut(s) 380, 418, 670, 1753
StyI CCWWGG 4 cut(s) 159, 243, 374, 1376
TaaI ACNGT 6 cut(s) 899, 980, 1239, 1428, 1664, 1837
TaiI ACGT 3 cut(s) 292, 1133, 1262
TaqI TCGA 6 cut(s) 364, 1062, 1206, 1498, 1569, 1580
TaqII GACCGA 1 cut(s) 1261
TfiI GAWTC 2 cut(s) 1319, 1488
Tru1I TTAA 5 cut(s) 173, 666, 695, 1197, 1464
Tru9I TTAA 5 cut(s) 173, 666, 695, 1197, 1464
TscAI CASTG 6 cut(s) 103, 985, 1351, 1368, 1669, 1872
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 7 cut(s) 844, 983, 1107, 1304, 1517, 1520, 1862
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 9 cut(s) 192, 939, 1070, 1107, 1167, 1386, 1431, 1722, 1739
TspGWI ACGGA 1 cut(s) 1684
TspRI CASTG 6 cut(s) 103, 985, 1351, 1368, 1669, 1872
Van91I CCANNNNNTGG 1 cut(s) 683
VneI GTGCAC 2 cut(s) 1450, 1665
VpaK11BI GGWCC 4 cut(s) 378, 434, 608, 674
XapI RAATTY 5 cut(s) 105, 813, 1068, 1249, 1730
XceI RCATGY 3 cut(s) 1355, 1462, 1598
XcmI CCANNNNNNNNNTGG 1 cut(s) 1499
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 5 cut(s) 213, 375, 854, 1140, 1856
Zsp2I ATGCAT 1 cut(s) 1703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.